mRNA_S-dermatodea_contig9731.17725.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9731.17725.1
Unique NamemRNA_S-dermatodea_contig9731.17725.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9731.17725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9731contigS-dermatodea_contig9731:3642..4647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.2112532-CDS-S-dermatodea_contig9731:3641..36981622925428.2112532-CDS-S-dermatodea_contig9731:3641..3698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9731 3642..3698 +
1694079926.83863-CDS-S-dermatodea_contig9731:3641..36981694079926.83863-CDS-S-dermatodea_contig9731:3641..3698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9731 3642..3698 +
1622925428.2219136-CDS-S-dermatodea_contig9731:4500..46471622925428.2219136-CDS-S-dermatodea_contig9731:4500..4647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9731 4501..4647 +
1694079926.8494663-CDS-S-dermatodea_contig9731:4500..46471694079926.8494663-CDS-S-dermatodea_contig9731:4500..4647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9731 4501..4647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9731.17725.1prot_S-dermatodea_contig9731.17725.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9731 3642..4647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9731.17725.1

>prot_S-dermatodea_contig9731.17725.1 ID=prot_S-dermatodea_contig9731.17725.1|Name=mRNA_S-dermatodea_contig9731.17725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
RRAPGVFVEGAKRFVHLAQDRAEQDTNRVASLVVNARRKTSTDAQAGLLA
AAHEKNVAYGTKIARMEK
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mRNA from alignment at S-dermatodea_contig9731:3642..4647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9731.17725.1 ID=mRNA_S-dermatodea_contig9731.17725.1|Name=mRNA_S-dermatodea_contig9731.17725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1006bp|location=Sequence derived from alignment at S-dermatodea_contig9731:3642..4647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCGGGCCCCGGGTGTGTTCGTGGAAGGGGCCAAGCGCTTTGTCCACCT
AGCTCAGGTGAGGAGTGACTGCGAAGTAACTCTGCGAAGCAGCTGTAATA
GCTTATTTTTCTTGTAATTGGACACCGCACTTGGTTTCGGGTGGCTGGTG
GTTGTGGCAATTCGTGGACGAAGATATATTACTAAATAGCACTCAGTTTG
TTGACAAGACGGGTCAACGTTGATCTTGATGGGCTTTTTTCCTCTTTTAT
ATACCATATATTTTGACCATCACTTCCTTCCGACGACCGGCCGAATTCTC
CTGATCCCGCCCAAGGTAACAAGCGATCCATAATACACTCGATGAATTCT
CCCCGGTACAAAGCGCGTTATACGTACCAAGGTCTTCCGGTGTATGACAT
GGTGGGCGGGGCGGGGTGCGCCGTACGTTGCGTGGGCTATAGCCGTAGAT
CTGCGAAGGCGTGAAGGCCGATTTTGGTTTTGCGATTTTTCCCGCAGTCC
GCCGATAGTTTTTGGGGGGTTTTCGATAGTCACTCGCACCCTGGCGCATT
CTGCGGCGGAAAGGAAGGAGTTATTATTTTGGCACCACCTAACCGGTGCG
GTGGTGATAATGCCAGTTGAAGCCTTGGGTGGGCGAGCGGTCTGCATTTG
ATCATTTTAAGAGGTAATCTTCACGATGCTGCACCTCTGCCATGCACTGG
GAAGACACGCCAGCGACAAAAAATAATATAAACTTGAGTGCCAACGTGAA
GGCCTCGTCCCCTCCCTCCCCTCCTACCCCCTCGTGTTCCTCCTCCTATC
GAACACCTCCATCACGTCGAACCCCGTCTCCATCTTTGTTGTTGCACGCC
ACCCCCAAGGACCGTGCTGAACAAGACACCAACAGGGTGGCAAGCCTTGT
CGTGAACGCCCGCCGCAAGACCAGCACCGACGCGCAAGCGGGCCTTTTGG
CCGCTGCCCACGAAAAGAACGTGGCCTACGGAACGAAGATCGCCAGGATG
GAGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9731:3642..4647+

>mRNA_S-dermatodea_contig9731.17725.1 ID=mRNA_S-dermatodea_contig9731.17725.1|Name=mRNA_S-dermatodea_contig9731.17725.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig9731:3642..4647+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCGGGCCCCGGGTGTGTTCGTGGAAGGGGCCAAGCGCTTTGTCCACCT
AGCTCAGAGGCGGGCCCCGGGTGTGTTCGTGGAAGGGGCCAAGCGCTTTG
TCCACCTAGCTCAGGACCGTGCTGAACAAGACACCAACAGGGTGGCAAGC
CTTGTCGTGAACGCCCGCCGCAAGACCAGCACCGACGCGCAAGCGGGCCT
TTTGGCCGCTGCCCACGAAAAGAACGTGGCCTACGGAACGAAGATCGCCA
GGATGGAGAAGGACCGTGCTGAACAAGACACCAACAGGGTGGCAAGCCTT
GTCGTGAACGCCCGCCGCAAGACCAGCACCGACGCGCAAGCGGGCCTTTT
GGCCGCTGCCCACGAAAAGAACGTGGCCTACGGAACGAAGATCGCCAGGA
TGGAGAAG
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