mRNA_S-dermatodea_contig97304.17724.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97304.17724.1
Unique NamemRNA_S-dermatodea_contig97304.17724.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig97304.17724.1 vs. uniprot
Match: A0A2D8XKI4_9HYPH (Peptidase S1 domain-containing protein (Fragment) n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D8XKI4_9HYPH)

HSP 1 Score: 221 bits (564), Expect = 2.550e-65
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    1 TVENGATLATEGTSSLSNGSLKLNGQFAALGLNINGGMLSGSGNLATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIEIEGDQSDQLRVIGTADIGGILALSIAPGGALPENGKTFLLVNAGTLTGDWDDTAPNLPGTLIVTGENLTATGYEVTIGRQSFNAVL 510
            TVENGAT ATEGTSSLSNG+L+LNGQFAALGLNI+GGMLSGSGNLATV XXXXXXXXXXXXXXXXXXXXXXXX       LS+E++GDQSDQL V GTAD+GGILALS+APGGALPENG+TFLLVNAG LTGDWDDTAPNLPGT+IVTGENLTATGY VTIGRQSFN VL
Sbjct:  355 TVENGATFATEGTSSLSNGALQLNGQFAALGLNISGGMLSGSGNLATVNXXXXXXXXXXXXXXXXXXXXXXXXTLSNDAILSMELDGDQSDQLLVTGTADLGGILALSLAPGGALPENGETFLLVNAGALTGDWDDTAPNLPGTIIVTGENLTATGYAVTIGRQSFNNVL 524
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97304.17724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D8XKI4_9HYPH2.550e-6585.88Peptidase S1 domain-containing protein (Fragment) ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97304contigS-dermatodea_contig97304:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.172916-CDS-S-dermatodea_contig97304:1..5111622925428.172916-CDS-S-dermatodea_contig97304:1..511Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97304 2..511 +
1694079926.8281178-CDS-S-dermatodea_contig97304:1..5111694079926.8281178-CDS-S-dermatodea_contig97304:1..511Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97304 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97304.17724.1prot_S-dermatodea_contig97304.17724.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97304 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97304.17724.1

>prot_S-dermatodea_contig97304.17724.1 ID=prot_S-dermatodea_contig97304.17724.1|Name=mRNA_S-dermatodea_contig97304.17724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=170bp
TVENGATLATEGTSSLSNGSLKLNGQFAALGLNINGGMLSGSGNLATVNG
LTATAGTIAPGNSIGTLNVVGNLTLSDDATLSIEIEGDQSDQLRVIGTAD
IGGILALSIAPGGALPENGKTFLLVNAGTLTGDWDDTAPNLPGTLIVTGE
NLTATGYEVTIGRQSFNAVL
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mRNA from alignment at S-dermatodea_contig97304:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97304.17724.1 ID=mRNA_S-dermatodea_contig97304.17724.1|Name=mRNA_S-dermatodea_contig97304.17724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig97304:2..511+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTTGAAAATGGCGCGACCCTTGCCACGGAAGGTACATCGAGTTTGAG
CAACGGCAGCTTAAAGCTCAATGGTCAATTCGCGGCACTCGGTCTCAACA
TCAATGGTGGAATGCTGTCAGGGTCCGGCAACCTGGCAACCGTGAATGGA
CTCACGGCGACTGCAGGCACCATCGCTCCAGGAAACTCCATCGGCACCCT
AAACGTGGTTGGGAACCTGACCCTTTCCGATGACGCAACCTTGTCGATAG
AGATTGAAGGCGATCAAAGTGATCAACTGCGTGTCATCGGCACCGCAGAT
ATTGGCGGCATACTTGCCCTCTCCATTGCCCCCGGTGGCGCTCTACCCGA
AAACGGCAAAACATTCCTGCTTGTTAACGCAGGTACTCTGACCGGCGATT
GGGATGACACCGCACCCAACCTGCCTGGCACACTAATTGTGACCGGCGAA
AACCTGACGGCAACCGGTTATGAAGTCACCATCGGTCGGCAGAGTTTTAA
TGCAGTCCTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig97304:2..511+

>mRNA_S-dermatodea_contig97304.17724.1 ID=mRNA_S-dermatodea_contig97304.17724.1|Name=mRNA_S-dermatodea_contig97304.17724.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at S-dermatodea_contig97304:2..511+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGTTGAAAATGGCGCGACCCTTGCCACGGAAGGTACATCGAGTTTGAG
CAACGGCAGCTTAAAGCTCAATGGTCAATTCGCGGCACTCGGTCTCAACA
TCAATGGTGGAATGCTGTCAGGGTCCGGCAACCTGGCAACCGTGAATGGA
CTCACGGCGACTGCAGGCACCATCGCTCCAGGAAACTCCATCGGCACCCT
AAACGTGGTTGGGAACCTGACCCTTTCCGATGACGCAACCTTGTCGATAG
AGATTGAAGGCGATCAAAGTGATCAACTGCGTGTCATCGGCACCGCAGAT
ATTGGCGGCATACTTGCCCTCTCCATTGCCCCCGGTGGCGCTCTACCCGA
AAACGGCAAAACATTCCTGCTTGTTAACGCAGGTACTCTGACCGGCGATT
GGGATGACACCGCACCCAACCTGCCTGGCACACTAATTGTGACCGGCGAA
AACCTGACGGCAACCGGTTATGAAGTCACCATCGGTCGGCAGAGTTTTAA
TGCAGTCCTTACCGTTGAAAATGGCGCGACCCTTGCCACGGAAGGTACAT
CGAGTTTGAGCAACGGCAGCTTAAAGCTCAATGGTCAATTCGCGGCACTC
GGTCTCAACATCAATGGTGGAATGCTGTCAGGGTCCGGCAACCTGGCAAC
CGTGAATGGACTCACGGCGACTGCAGGCACCATCGCTCCAGGAAACTCCA
TCGGCACCCTAAACGTGGTTGGGAACCTGACCCTTTCCGATGACGCAACC
TTGTCGATAGAGATTGAAGGCGATCAAAGTGATCAACTGCGTGTCATCGG
CACCGCAGATATTGGCGGCATACTTGCCCTCTCCATTGCCCCCGGTGGCG
CTCTACCCGAAAACGGCAAAACATTCCTGCTTGTTAACGCAGGTACTCTG
ACCGGCGATTGGGATGACACCGCACCCAACCTGCCTGGCACACTAATTGT
GACCGGCGAAAACCTGACGGCAACCGGTTATGAAGTCACCATCGGTCGGC
AGAGTTTTAATGCAGTCCTT
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