mRNA_S-dermatodea_contig97180.17719.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97180.17719.1
Unique NamemRNA_S-dermatodea_contig97180.17719.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: D8LGT2_ECTSI (PEra, plastid Era GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 9.480e-18
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            LA ELK+HIPEGPPLFG DVMSDKPQRFFAAEIIREQIF  FSQE+
Sbjct:  249 LAGELKKHIPEGPPLFGTDVMSDKPQRFFAAEIIREQIFGSFSQEI 294
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A6H5KDG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.320e-17
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            LA ELK+HIPEGPPLFG DVMSDKPQRFFAAEIIREQIF  FSQE+
Sbjct:  347 LAGELKKHIPEGPPLFGTDVMSDKPQRFFAAEIIREQIFGSFSQEI 392
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A836C977_9STRA (PEra, plastid Era GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C977_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.190e-13
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 QLAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            ++ +E+ +H+PE PPL+ AD MSD+P RFFA+EIIREQ+F C SQE+
Sbjct:  194 EMLKEISRHLPESPPLYAADTMSDRPMRFFASEIIREQVFTCMSQEI 240
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A7S2D4D6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4D6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-9
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 EELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            E+L   +PE PPL+ AD ++DKP+RFFAAEIIREQIF  ++ E+
Sbjct:   70 EKLTARLPESPPLYPADYLTDKPERFFAAEIIREQIFKAYAAEI 113
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A7C5L2M3_9BACT (GTPase Era n=1 Tax=Phaeodactylibacter sp. TaxID=1940289 RepID=A0A7C5L2M3_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 3.060e-9
Identity = 22/46 (47.83%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            L +++ QH+PEGPP +  +++SD+P+RFF +E+IRE+IF  + QE+
Sbjct:   48 LMQKILQHLPEGPPYYPKEILSDRPERFFVSELIREKIFLLYHQEI 93
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A2T2TL24_9BACT (GTPase Era n=1 Tax=Bacteroidetes bacterium QS_8_68_15 TaxID=1919109 RepID=A0A2T2TL24_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.070e-9
Identity = 24/46 (52.17%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            L +E+ +H+PEGPP +  D +S++P+RFFAAEI+RE++F  F QE+
Sbjct:  169 LLDEVTEHLPEGPPFYPKDQISEQPERFFAAEIVREKVFRQFRQEI 214
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A2T2V6M7_9BACT (GTPase Era n=1 Tax=Bacteroidetes bacterium QS_8_68_28 TaxID=1919110 RepID=A0A2T2V6M7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.220e-9
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            L E++ QH+PEGPP +  D +S+ P+RFFAAEI+RE++F  F +E+
Sbjct:  169 LLEQITQHLPEGPPFYPKDQVSEHPERFFAAEIVREKVFQQFREEI 214
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A3R8LQG3_9BURK (GTPase Era n=2 Tax=Lautropia TaxID=47670 RepID=A0A3R8LQG3_9BURK)

HSP 1 Score: 59.3 bits (142), Expect = 4.220e-9
Identity = 23/46 (50.00%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            L + ++QH+PE PP++G D ++D+P+RFFAAEIIRE++F    +E+
Sbjct:  172 LLDAIEQHLPEAPPIYGEDELTDRPERFFAAEIIREKLFRLLGEEL 217
[Close]
BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A1V0DEN1_9BACT (GTPase Era n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DEN1_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.100e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 LAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            L EE+ QH+P GPP +  D++S+ P+RFF AEIIRE+IF  ++QE+
Sbjct:  169 LLEEILQHLPFGPPFYPKDMISEHPERFFVAEIIREKIFEHYAQEI 214
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BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Match: A0A7V3C6Z7_9BACT (GTPase Era n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V3C6Z7_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-8
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QLAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV 141
            +L + + +H+PEGPP F AD ++D+PQRF AAEIIRE+IF    QEV
Sbjct:  165 RLEQAVVRHLPEGPPYFSADYLTDQPQRFLAAEIIREKIFNETHQEV 211
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97180.17719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT2_ECTSI9.480e-1886.96PEra, plastid Era GTPase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KDG7_9PHAE1.320e-1786.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C977_9STRA4.190e-1359.57PEra, plastid Era GTPase n=1 Tax=Tribonema minus T... [more]
A0A7S2D4D6_9STRA1.380e-959.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7C5L2M3_9BACT3.060e-947.83GTPase Era n=1 Tax=Phaeodactylibacter sp. TaxID=19... [more]
A0A2T2TL24_9BACT3.070e-952.17GTPase Era n=1 Tax=Bacteroidetes bacterium QS_8_68... [more]
A0A2T2V6M7_9BACT4.220e-952.17GTPase Era n=1 Tax=Bacteroidetes bacterium QS_8_68... [more]
A0A3R8LQG3_9BURK4.220e-950.00GTPase Era n=2 Tax=Lautropia TaxID=47670 RepID=A0A... [more]
A0A1V0DEN1_9BACT1.100e-854.35GTPase Era n=2 Tax=Bacteroidetes TaxID=976 RepID=A... [more]
A0A7V3C6Z7_9BACT1.500e-857.45GTPase Era n=1 Tax=Acidobacteria bacterium TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97180contigS-dermatodea_contig97180:107..247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9.4e-15
Seed eggNOG ortholog2880.D8LGT2
KEGG koko:K01230,ko:K03595
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.GTP binding
EggNOG OGsCOG1159@1,KOG1423@2759
EC3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03029,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPEra, plastid Era GTPase
Ec32 orthologEc-07_005140.1
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925427.7465177-CDS-S-dermatodea_contig97180:106..2471622925427.7465177-CDS-S-dermatodea_contig97180:106..247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97180 107..247 -
1694079926.4846764-CDS-S-dermatodea_contig97180:106..2471694079926.4846764-CDS-S-dermatodea_contig97180:106..247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97180 107..247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97180.17719.1prot_S-dermatodea_contig97180.17719.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97180 107..247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97180.17719.1

>prot_S-dermatodea_contig97180.17719.1 ID=prot_S-dermatodea_contig97180.17719.1|Name=mRNA_S-dermatodea_contig97180.17719.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=47bp
QLAEELKQHIPEGPPLFGADVMSDKPQRFFAAEIIREQIFACFSQEV
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mRNA from alignment at S-dermatodea_contig97180:107..247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97180.17719.1 ID=mRNA_S-dermatodea_contig97180.17719.1|Name=mRNA_S-dermatodea_contig97180.17719.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at S-dermatodea_contig97180:107..247- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTTGCCGAAGAGCTGAAGCAGCATATCCCGGAGGGCCCGCCCCTGTT
CGGCGCGGACGTGATGTCCGACAAGCCGCAGCGATTCTTCGCCGCCGAGA
TCATCAGGGAGCAGATCTTCGCTTGTTTCTCACAGGAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig97180:107..247-

>mRNA_S-dermatodea_contig97180.17719.1 ID=mRNA_S-dermatodea_contig97180.17719.1|Name=mRNA_S-dermatodea_contig97180.17719.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at S-dermatodea_contig97180:107..247- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTTGCCGAAGAGCTGAAGCAGCATATCCCGGAGGGCCCGCCCCTGTT
CGGCGCGGACGTGATGTCCGACAAGCCGCAGCGATTCTTCGCCGCCGAGA
TCATCAGGGAGCAGATCTTCGCTTGTTTCTCACAGGAGGTGCAGCTTGCC
GAAGAGCTGAAGCAGCATATCCCGGAGGGCCCGCCCCTGTTCGGCGCGGA
CGTGATGTCCGACAAGCCGCAGCGATTCTTCGCCGCCGAGATCATCAGGG
AGCAGATCTTCGCTTGTTTCTCACAGGAGGTG
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