mRNA_S-dermatodea_contig97123.17717.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97123.17717.1
Unique NamemRNA_S-dermatodea_contig97123.17717.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: D7FKD0_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.600e-21
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV 123
            GQHRWVEYADIHNYDSS+VTA+WHPWLHHMSDHTPS AAE+
Sbjct:   55 GQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAAAEL 95          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A835ZAE7_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.240e-12
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAE 120
            G HRWVEYAD HNYDSSTVT  WH WLH+M D  P  +A+
Sbjct:   51 GTHRWVEYADCHNYDSSTVTPEWHGWLHNMHDTPPDQSAD 90          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: W7TFP2_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFP2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.990e-11
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV 123
            GQHRWVEY DIHNY+ S++   WH W+HHM+D  P+  A V
Sbjct:   54 GQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGV 94          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A4D9CLK1_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLK1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.590e-11
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV 123
            GQHRWVEY DIHNY+ S++   WH W+HHM+D  P+  A V
Sbjct:  111 GQHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGV 151          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A7S3HS43_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HS43_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.790e-10
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV 123
            GQHRWVEY +IHNYDS+ +   WH W+HH+ D TP+    V
Sbjct:   56 GQHRWVEYKNIHNYDSTMIQPEWHGWMHHVYDETPNDPVAV 96          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A7R9YAC7_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.040e-10
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV 123
            GQHRWVEY DIHNYD+S +   WH W+HH  D  P+ A  +
Sbjct:  104 GQHRWVEYKDIHNYDASMIPPEWHGWIHHTYDEPPTVATTL 144          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A7S2GA95_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GA95_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.180e-9
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAE 120
            GQHRWVEYADIHNYD+++V   WH W+ HM D   S A E
Sbjct:   92 GQHRWVEYADIHNYDAASVPPEWHGWMTHMQDAPGSDARE 131          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A7S0XDH0_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDH0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.450e-9
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    4 QHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTP 105
            QHRW+EYADIH++D+S +   WH W+HHM D  P
Sbjct:   55 QHRWIEYADIHDFDASMIQPEWHGWMHHMYDEVP 88          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: C1EHV1_MICCC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHV1_MICCC)

HSP 1 Score: 54.3 bits (129), Expect = 2.520e-8
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSD 96
            G+HRWVEYAD+ NY++STV + WH WL H+ D
Sbjct:   22 GRHRWVEYADLDNYNASTVPSEWHGWLSHVDD 53          
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Match: A0A1Z5JSL8_FISSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSL8_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 6.330e-8
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    1 GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPS 108
            GQHRWVE ADIHN+DS+ V   WH WL  M+D TPS
Sbjct:   59 GQHRWVEPADIHNFDSAQVPPEWHGWLTCMNDATPS 94          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97123.17717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FKD0_ECTSI3.600e-2190.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A835ZAE7_9STRA8.240e-1267.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
W7TFP2_9STRA4.990e-1158.54NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A4D9CLK1_9STRA9.590e-1158.54NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3HS43_9STRA1.790e-1056.10NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7R9YAC7_9STRA3.040e-1056.10NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S2GA95_9STRA1.180e-962.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S0XDH0_9STRA4.450e-958.82NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
C1EHV1_MICCC2.520e-862.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A1Z5JSL8_FISSO6.330e-866.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97123contigS-dermatodea_contig97123:246..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-05_005740.1
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925427.6628487-CDS-S-dermatodea_contig97123:245..3681622925427.6628487-CDS-S-dermatodea_contig97123:245..368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97123 246..368 -
1694079926.451991-CDS-S-dermatodea_contig97123:245..3681694079926.451991-CDS-S-dermatodea_contig97123:245..368Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97123 246..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97123.17717.1prot_S-dermatodea_contig97123.17717.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97123 246..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97123.17717.1

>prot_S-dermatodea_contig97123.17717.1 ID=prot_S-dermatodea_contig97123.17717.1|Name=mRNA_S-dermatodea_contig97123.17717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
GQHRWVEYADIHNYDSSTVTAAWHPWLHHMSDHTPSPAAEV
back to top

mRNA from alignment at S-dermatodea_contig97123:246..368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97123.17717.1 ID=mRNA_S-dermatodea_contig97123.17717.1|Name=mRNA_S-dermatodea_contig97123.17717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig97123:246..368- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCAACACAGATGGGTGGAGTACGCGGACATCCACAACTACGACAGCAG CACCGTCACCGCCGCGTGGCACCCGTGGCTCCACCACATGAGCGACCATA CCCCTTCTCCTGCGGCAGAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig97123:246..368-

>mRNA_S-dermatodea_contig97123.17717.1 ID=mRNA_S-dermatodea_contig97123.17717.1|Name=mRNA_S-dermatodea_contig97123.17717.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig97123:246..368- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCAACACAGATGGGTGGAGTACGCGGACATCCACAACTACGACAGCAG
CACCGTCACCGCCGCGTGGCACCCGTGGCTCCACCACATGAGCGACCATA
CCCCTTCTCCTGCGGCAGAGGTGGGGCAACACAGATGGGTGGAGTACGCG
GACATCCACAACTACGACAGCAGCACCGTCACCGCCGCGTGGCACCCGTG
GCTCCACCACATGAGCGACCATACCCCTTCTCCTGCGGCAGAGGTG
back to top