mRNA_S-dermatodea_contig9709.17711.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9709.17711.1
Unique NamemRNA_S-dermatodea_contig9709.17711.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: D7G765_ECTSI (Flavoprotein Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G765_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.950e-45
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:    1 ALQARPHLRDLDVAIIGGGVAGLASAISLRAIAGV-KPTVFESSQGFG-YGGFGLALWPNGLRALRHMDISLHDEVVRSGSVIEERLFTTSESTSIDYCREREAFGHP 318
            AL   P+ + LDVAI+GGG+AGLASA+SLRAI GV K  VFE  +GFG YGGFGLALWPNGLRALRHMD SLHDEVVRSGSVI ER+FTT+ESTSIDYCREREAFGHP
Sbjct:   31 ALTTSPN-QGLDVAIVGGGIAGLASAVSLRAIGGVRKVRVFERGEGFGEYGGFGLALWPNGLRALRHMDTSLHDEVVRSGSVIGERMFTTAESTSIDYCREREAFGHP 137
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: W7TLA0_9STRA (Salicylate 1-monooxygenase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLA0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.090e-7
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 ALQARPHLRD----LDVAIIGGGVAGLASAISLRAIAG-VKPTVFESSQGFGYG-GFGLALWPNGLRALRHMDISLHDEVVRSGSVIEERLFTT 264
            A +A P   D    LDVAI+GGG+ GLA+A++L+ +A  +   ++E S     G G  L LWPNGL AL  +D +L  +V  +GSVI ++ F T
Sbjct:   50 ATRAAPLPNDDTEVLDVAIVGGGIGGLATALALQKLAPELSFCLYERSPTLRGGEGTALTLWPNGLSALGAIDAALLAQVKSAGSVIRKQTFNT 143
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: A0A4D9D1H2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1H2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-7
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 ALQARPHLRD----LDVAIIGGGVAGLASAISLRAIAG-VKPTVFESSQGFGYG-GFGLALWPNGLRALRHMDISLHDEVVRSGSVIEERLFTT 264
            A +A P  +D    LDVAI+GGG+ GLA+A++L+ +A  +   ++E S     G G  L LWPNGL AL  +D +L  +V  +GSVI ++ F T
Sbjct:   23 ATRAAPLPKDDTEVLDVAIVGGGIGGLATALALQKLAPELSFCLYERSPILRGGEGTALTLWPNGLSALGTIDAALLTQVKAAGSVIRKQTFNT 116
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: UPI00068ED50B (FAD-dependent monooxygenase n=1 Tax=Lentzea aerocolonigenes TaxID=68170 RepID=UPI00068ED50B)

HSP 1 Score: 57.4 bits (137), Expect = 2.250e-7
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   31 LDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDISLHDEVVRSG---SVIEERLFTTSESTSIDYCR 294
            + VA+IGGGV GLA++++LR   GV+ TVFE  +GF   G G+ L PNGLRAL  + +   DEV   G   SV  E   +T +  S+   R
Sbjct:    1 MHVAVIGGGVGGLAASLALRGT-GVRTTVFERQRGFPLTGAGVVLSPNGLRALDALGVG--DEVRERGHCLSVESEHHVSTVDGQSLGAIR 88
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: A0A835XYQ0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XYQ0_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.390e-7
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 ALQARPHLRDLDVAIIGGGVAGLASAISL-RAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDISLHDEVVRSGSVI 243
            A  + P   DLDVAI+GGG AGLA+A +L RA  GVK  VFE++  +   G G+ +  NG RAL  +D  L  ++V  G++I
Sbjct:   37 AASSGPVDDDLDVAIVGGGPAGLAAAAALLRAAPGVKLRVFEAAPSYREQGAGVLVQANGGRALEALDPRLMHQLVSYGTII 118
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: UPI00135AD502 (FAD-dependent monooxygenase n=1 Tax=Halococcus salsus TaxID=2162894 RepID=UPI00135AD502)

HSP 1 Score: 56.6 bits (135), Expect = 4.190e-7
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   34 DVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDISLHDEVVRSGSVIEERLFTTSE 270
            D+AIIGGG+ GL +AI L+   G  P V+E++      GFG+ + PNG++AL H+D++  D VV  G  ++     T E
Sbjct:    3 DIAIIGGGIGGLCTAIGLQT-RGFDPVVYEATDELRPVGFGIGIAPNGMQALDHLDVA--DPVVERGVAVDRIELRTKE 78
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: L2G0B3_COLFN (6-hydroxynicotinate 3-monooxygenase n=5 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=L2G0B3_COLFN)

HSP 1 Score: 56.6 bits (135), Expect = 4.310e-7
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   28 DLDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDI--SLHDEVV---RSGSVIEERLFTTSESTSID 285
             L VAI+G G+AGL SAI+L+A  G+   +F+ ++     G  +AL PNGLR L  + I  +L DE+    +SG  +  R + T E  S+D
Sbjct:    6 QLQVAIVGAGIAGLTSAIALKAHPGINVQIFDKARELREVGASIALGPNGLRTLEKLGIHNALDDEIAFRNKSGYPMIYRHYKTGEIVSVD 96
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: C1ED88_MICCC (FAD_binding_3 domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ED88_MICCC)

HSP 1 Score: 56.6 bits (135), Expect = 4.540e-7
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   28 DLDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGF-GYGGFGLALWPNGLRALRHMDISLHDEVVRSGSVI 243
            +L   I+GGG+ GLA+A++LR I GV   V+E +    G  G G+A+WPNG++ALR +   +  EV   G  I
Sbjct:   48 NLSAVIVGGGIGGLAAAVALRRI-GVDAHVYERASAMRGNAGTGIAIWPNGIKALRFLGDDVASEVASRGCEI 119
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BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: T0K0W7_COLGC (RNA-directed RNA polymerase n=1 Tax=Colletotrichum gloeosporioides (strain Cg-14) TaxID=1237896 RepID=T0K0W7_COLGC)

HSP 1 Score: 56.6 bits (135), Expect = 4.740e-7
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:   28 DLDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDI--SLHDEVV---RSGSVIEERLFTTSESTSID 285
             L VAI+G G+AGL SAI+L+A  G+   +F+ ++     G  +AL PNGLR L  + I  +L DE+    +SG  +  R + T E  S+D
Sbjct:    6 QLQVAIVGAGIAGLTSAIALKAHPGINVQIFDKARELREVGASIALGPNGLRTLEKLGIHNALDDEIAFRNKSGYPMIYRHYKTGEIVSVD 96
[Close]
BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Match: A0A177C6Z1_9PLEO (FAD/NAD(P)-binding domain-containing protein n=1 Tax=Paraphaeosphaeria sporulosa TaxID=1460663 RepID=A0A177C6Z1_9PLEO)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-7
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   28 DLDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGGFGLALWPNGLRALRHMDISLHDEV 222
            DL VAI+GGG+ G+A AI+L+A   +  T++E+   F   G G+ L PNGL ALR +D SL D +
Sbjct:    4 DLHVAIVGGGLGGIALAIALKA-RNISFTIYEAKSAFTEIGAGINLAPNGLHALREIDASLGDRI 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9709.17711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G765_ECTSI2.950e-4579.63Flavoprotein Monooxygenase n=2 Tax=Ectocarpus TaxI... [more]
W7TLA0_9STRA1.090e-742.55Salicylate 1-monooxygenase (Fragment) n=1 Tax=Nann... [more]
A0A4D9D1H2_9STRA1.290e-742.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI00068ED50B2.250e-743.96FAD-dependent monooxygenase n=1 Tax=Lentzea aeroco... [more]
A0A835XYQ0_9CHLO2.390e-745.12Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI00135AD5024.190e-740.51FAD-dependent monooxygenase n=1 Tax=Halococcus sal... [more]
L2G0B3_COLFN4.310e-739.566-hydroxynicotinate 3-monooxygenase n=5 Tax=Collet... [more]
C1ED88_MICCC4.540e-742.47FAD_binding_3 domain-containing protein n=1 Tax=Mi... [more]
T0K0W7_COLGC4.740e-739.56RNA-directed RNA polymerase n=1 Tax=Colletotrichum... [more]
A0A177C6Z1_9PLEO5.850e-747.69FAD/NAD(P)-binding domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9709contigS-dermatodea_contig9709:1092..2663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.8e-38
Seed eggNOG ortholog2880.D7G765
KEGG rclassRC00046,RC00389
KEGG koko:K00480,ko:K00486
KEGG ReactionR00818,R01960,R05632,R06915,R06936,R06939
KEGG Pathwayko00380,ko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00380,map00621,map00624,map00626,map01100,map01120,map01220
KEGG ModuleM00038
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.13.1,1.14.13.9
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFlavoprotein Monooxygenase
Ec32 orthologEc-01_010880.1
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9709.17711.1prot_S-dermatodea_contig9709.17711.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9709 1092..2663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.9785142-CDS-S-dermatodea_contig9709:1091..11731622925426.9785142-CDS-S-dermatodea_contig9709:1091..1173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 1092..1173 -
1694079925.8252559-CDS-S-dermatodea_contig9709:1091..11731694079925.8252559-CDS-S-dermatodea_contig9709:1091..1173Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 1092..1173 -
1622925427.001271-CDS-S-dermatodea_contig9709:2077..22831622925427.001271-CDS-S-dermatodea_contig9709:2077..2283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2078..2283 -
1694079925.8394203-CDS-S-dermatodea_contig9709:2077..22831694079925.8394203-CDS-S-dermatodea_contig9709:2077..2283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2078..2283 -
1622925427.014205-CDS-S-dermatodea_contig9709:2633..26631622925427.014205-CDS-S-dermatodea_contig9709:2633..2663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2634..2663 -
1694079925.8493683-CDS-S-dermatodea_contig9709:2633..26631694079925.8493683-CDS-S-dermatodea_contig9709:2633..2663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2634..2663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9709.17711.1

>prot_S-dermatodea_contig9709.17711.1 ID=prot_S-dermatodea_contig9709.17711.1|Name=mRNA_S-dermatodea_contig9709.17711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
ALQARPHLRDLDVAIIGGGVAGLASAISLRAIAGVKPTVFESSQGFGYGG
FGLALWPNGLRALRHMDISLHDEVVRSGSVIEERLFTTSESTSIDYCRER
EAFGHP
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mRNA from alignment at S-dermatodea_contig9709:1092..2663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9709.17711.1 ID=mRNA_S-dermatodea_contig9709.17711.1|Name=mRNA_S-dermatodea_contig9709.17711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1572bp|location=Sequence derived from alignment at S-dermatodea_contig9709:1092..2663- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACTGCAGGCTAGGCCCCATCTTCGAGACGTGAGTCATTTGTTCTAGGT
TATCTGTCGTGTTTGCCGCCTGCACGCGTACGCTGAACGCGGATCATGCG
CACATCCGTGCTTAGGCGCGCACGGCGGGGGGGGTGGGTGGGTGAGTGGG
GGGAGGCGAAGGGGGGGTGGTTTCGTCATGGATGCATGGATCCTACCGTA
GGGCACGTTCTACAGCTAGGAATATCCGCCCGCATGCAGTCCAACTCCCC
AAGGGGAGCTCTCAGGTATCGGGTGTGTGTACAGCTGTACAAGTACCAAA
AGTGTACGCTGAACTTCAATTTCAACGTTTCCAATAAACGTTCGCCCCTG
CCTGCCGCTCCCCGACTCTCGATTTTTCAGCTAGATGTGGCAATCATCGG
GGGGGGTGTCGCGGGGCTAGCCAGCGCGATATCCCTTCGCGCGATTGCCG
GCGTCAAGCCCACGGTTTTCGAGAGCAGCCAAGGCTTTGGGTACGGCGGA
TTCGGCTTGGCACTGTGGCCGAATGGCCTGCGAGCTCTCCGTCACATGGA
CATTTCCCTACACGATGAGGTCGTCCGCTCGGGAAGGTGAGAGAAGAGGA
CGACATTTTGCCTCGCAGCTCGGCTCGGCCGGCCCAAACAGAGCGATAGG
CAACCGGCCCTGTCCGCCCCCCAGCGGCTGTGTGATGGGGCGACGAGATC
AGCAACGAGCGATTGTGTGTACTGCTTCTCGGCAGGGTGTAAGAAATCGG
AGCATTTTACCATGCAATATTGAGCTCTGGTTTCGGCGCAATTTTGGATA
CGACACAAGTTAAAGCTCTGTTACTATAATGTTGTCCTAAAGTAAGCCTT
TCCGTCTTCGCGCCGTATACGACAGGCAGACTGTTCTCGGGCTGTGATTG
TGGCGGGAGCCCTGCCGTGGCCTTAAATCCTATTCCGGGGTTTTGTACCC
AGGCCGTGTCATGTTCTCGCTGCTTCTGCAAGATCTATATGTGCGAGTTG
CGTAAGTACTGAGTATTGCGGATAAACTCTGTCGTGCACGTTTTAATAAC
GGTGGGCGCCGATGCACGACTACAGCTGTAGTATCCAAAGCGCTGGAGAT
GAAGAGGGGGACATCGCGAGGTCGTAGCGGAATTATTTGAAGTGGGGCGT
TTCCGCCTCGTCACCACGTGCTTCCATTCATTTGTTGTCTTGATGCATCG
CCCTCGAGGTGTCCGCGACGCTTTGCACCACCGCGAGCCGTTTTGTGCCC
CTCGCGCACGCTACAGCGGTGCAAGTACTACTCTCTTCGCGTCCCTTTTT
TTTTAACGTGATGACCGCCTACGGTTATGATTGCACTGTCGGGCATCCCA
TCATTTCAAGTACTTTATCAGTTGTCATGCGAGAGCTAGGAGCGGCCACC
TATGCACAGCACAGGGCGAATCTAAAAAACGCGCGTGGTGCTGTCGTCTG
AACACCCTCGGCGTGCGCTTCTTAATCCCCGCTTCCGCAGCGTCATAGAG
GAGCGGCTGTTCACGACATCGGAGTCCACGAGCATCGACTACTGTAGGGA
GAGGGAAGCGTTTGGGCACCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9709:1092..2663-

>mRNA_S-dermatodea_contig9709.17711.1 ID=mRNA_S-dermatodea_contig9709.17711.1|Name=mRNA_S-dermatodea_contig9709.17711.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig9709:1092..2663- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACTGCAGGCTAGGCCCCATCTTCGAGACGCACTGCAGGCTAGGCCCCA
TCTTCGAGACCTAGATGTGGCAATCATCGGGGGGGGTGTCGCGGGGCTAG
CCAGCGCGATATCCCTTCGCGCGATTGCCGGCGTCAAGCCCACGGTTTTC
GAGAGCAGCCAAGGCTTTGGGTACGGCGGATTCGGCTTGGCACTGTGGCC
GAATGGCCTGCGAGCTCTCCGTCACATGGACATTTCCCTACACGATGAGG
TCGTCCGCTCGGGAAGCTAGATGTGGCAATCATCGGGGGGGGTGTCGCGG
GGCTAGCCAGCGCGATATCCCTTCGCGCGATTGCCGGCGTCAAGCCCACG
GTTTTCGAGAGCAGCCAAGGCTTTGGGTACGGCGGATTCGGCTTGGCACT
GTGGCCGAATGGCCTGCGAGCTCTCCGTCACATGGACATTTCCCTACACG
ATGAGGTCGTCCGCTCGGGAAGCGTCATAGAGGAGCGGCTGTTCACGACA
TCGGAGTCCACGAGCATCGACTACTGTAGGGAGAGGGAAGCGTTTGGGCA
CCCCCGTCATAGAGGAGCGGCTGTTCACGACATCGGAGTCCACGAGCATC
GACTACTGTAGGGAGAGGGAAGCGTTTGGGCACCCC
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