mRNA_S-dermatodea_contig9708.17709.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9708.17709.1
Unique NamemRNA_S-dermatodea_contig9708.17709.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A6H5JE64_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE64_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 7.760e-102
Identity = 173/212 (81.60%), Postives = 185/212 (87.26%), Query Frame = 1 
Query:    1 AAVPTPGKSGDQSPASGVARSPCVEGP-------DESDEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAVKA 615
            AA  TP K+  QSP  G   +P            DESD+ +AGGKERLAMVVIGHVDAGKSTLMGQVLVQ GQVTQRALHKQEKEAREAGK+SFFLAWVMDEDQEERAHGVTI+VAQK+IET TKLVTLLDAPGHRDFIPKMISGASAADAAVLV+PAA+GEFESGFQANGQTKEHAMLAKALGVNQLLVV+NKLD TDPPWS+ RY+AVKA
Sbjct:  289 AATRTPTKTRVQSPTGGGISAPSPXXXXXXXXXMDESDDAQAGGKERLAMVVIGHVDAGKSTLMGQVLVQMGQVTQRALHKQEKEAREAGKASFFLAWVMDEDQEERAHGVTIEVAQKHIETETKLVTLLDAPGHRDFIPKMISGASAADAAVLVVPAAVGEFESGFQANGQTKEHAMLAKALGVNQLLVVVNKLDATDPPWSEARYEAVKA 500
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A836CAR8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR8_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.780e-78
Identity = 122/163 (74.85%), Postives = 144/163 (88.34%), Query Frame = 1 
Query:  127 MVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAVKA 615
            MVV+GHVDAGKSTLMGQVLV+ G V+QR LHK E+EARE GK+SF+LAW+MDED+EERAHGVTIDVAQK++ T TKL+TLLDAPGHRDFIPKMISGA AAD AVLV+PA  GEFES F+++GQTKEHA+L KALGVNQ++V +NKLD   PPW + RY+A+KA
Sbjct:    1 MVVVGHVDAGKSTLMGQVLVKMGHVSQRVLHKHEREAREQGKASFYLAWIMDEDEEERAHGVTIDVAQKHVVTETKLITLLDAPGHRDFIPKMISGACAADVAVLVVPATPGEFESCFESSGQTKEHALLVKALGVNQVVVAVNKLDAAVPPWDEGRYEAIKA 163
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: K3W8G1_GLOUD (Tr-type G domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8G1_GLOUD)

HSP 1 Score: 222 bits (566), Expect = 4.540e-66
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:   85 ESDEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            E +  +AGGK +++MVVIGHVDAGKST+ G +L Q G V+Q+ +HK EKE+REAGKSSF  AWVMD D EER  GVT+DV   Y ET TK VTLLDAPGHRDFIPKMI+GAS AD AVLV+PAA GEFE+ F+ +GQTKEH +L ++LGV Q++V INK+D T   W Q R+DA+
Sbjct:  161 EEETNKAGGKTKISMVVIGHVDAGKSTITGHLLYQLGYVSQKMMHKYEKESREAGKSSFAYAWVMDADDEERTRGVTMDVGTSYFETKTKHVTLLDAPGHRDFIPKMIAGASQADVAVLVVPAATGEFEAAFENSGQTKEHTLLVRSLGVTQMIVAINKMDATG--WDQTRFDAI 333
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: M4BD98_HYAAE (Tr-type G domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD98_HYAAE)

HSP 1 Score: 217 bits (552), Expect = 4.550e-65
Identity = 106/173 (61.27%), Postives = 141/173 (81.50%), Query Frame = 1 
Query:   91 DEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            +E  +GGK +++MVVIGHVDAGKST+ G +L + G V++R +HK EKE+R+AGKSSF  AWVMD D++ER+ GVT+DV   Y ET TK VTLLDAPGHRDFIPKMI+GA+ AD AVLV+PA  GEFE+ F+ +GQTKEHA+L ++LGV Q++V +NK+D+T+  W QER+D++
Sbjct:  199 EEARSGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESRDAGKSSFAYAWVMDADEQERSRGVTMDVGTSYFETATKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHALLVRSLGVAQMVVAVNKMDMTN--WDQERFDSI 369
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A4D9D7U7_9STRA (Tr-type G domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7U7_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.680e-64
Identity = 115/186 (61.83%), Postives = 141/186 (75.81%), Query Frame = 1 
Query:   79 PDESDEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQ---------ANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            P + +  + G K R+AMVVIGHVDAGKSTLMGQVLV TG V+ R   K E++AR  GK+SF+LAW+MDED EERAHGVT++V QK IE   ++VTLLDAPGH DF+P+MI GA+ AD A+LV+PA  GEFE+GF          + GQTKEHA+LA+ALGVNQ+LV +NKLD  DPPWSQ RY  +
Sbjct:  332 PSKKEGEKEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGTVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKRIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAGAGTGRDGLSQGQTKEHALLARALGVNQILVAVNKLDAADPPWSQARYQGI 517
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: H3G570_PHYRM (Tr-type G domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G570_PHYRM)

HSP 1 Score: 214 bits (544), Expect = 2.210e-64
Identity = 105/173 (60.69%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:   91 DEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            +E  +GGK +++MVVIGHVDAGKST+ G +L + G V++R +HK EKE+REAGKSSF  AWVMD D+EER+ GVT+DV   + ET TK VTLLDAPGHRDFIPKMI+GA+ AD AVLV+PA  GEFE+ F+ +GQTKEH +L ++LGV+Q++V +NK+D+ +  W QER+D +
Sbjct:    4 EEARSGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADEEERSRGVTMDVGTSHFETATKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDQERFDNI 174
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A5D6Y1K1_9STRA (Tr-type G domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1K1_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.500e-63
Identity = 108/176 (61.36%), Postives = 138/176 (78.41%), Query Frame = 1 
Query:   88 SDEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAVKA 615
            +DE  A G+ +++MVVIGHVDAGKST+ G +L + G V+Q+ +HK EKE+REAGK+SF  AWVMD D +ER+ GVT+DV   Y ET TK VTLLDAPGHRDFIPKMI+GAS AD AVLV+PAA GEFE+ F+ +GQTKEH +L ++LGV Q++V +NK+D T   W Q R+DA+ A
Sbjct:  196 ADEASATGRAKISMVVIGHVDAGKSTITGHLLYRLGYVSQKLMHKYEKESREAGKASFAYAWVMDADDDERSRGVTMDVGTSYFETPTKHVTLLDAPGHRDFIPKMIAGASQADVAVLVVPAATGEFEAAFENSGQTKEHTLLVRSLGVTQMIVAVNKMDATG--WDQTRFDAIVA 369
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A833WM66_PHYIN (Elongation factor Tu GTP binding domain n=6 Tax=Phytophthora TaxID=4783 RepID=A0A833WM66_PHYIN)

HSP 1 Score: 213 bits (541), Expect = 7.100e-63
Identity = 104/173 (60.12%), Postives = 138/173 (79.77%), Query Frame = 1 
Query:   91 DEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            +E   GGK +++MVVIGHVDAGKST+ G +L + G V++R +HK EKE+REAGKSSF  AWVMD D+EER+ GVT+DV   + ET TK VTLLDAPGHRDFIPKMI+GA+ AD AVLV+PA  GEFE+ F+ +GQTKEH +L ++LGV Q++V +NK+D+ +  W +ER+D++
Sbjct:  228 EEARTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADEEERSRGVTMDVGTSHFETETKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHTLLVRSLGVAQMVVAVNKMDMVN--WDKERFDSI 398
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: A0A3M6V7P3_9STRA (Tr-type G domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7P3_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.060e-62
Identity = 103/168 (61.31%), Postives = 137/168 (81.55%), Query Frame = 1 
Query:  106 GGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            GGK +++MVVIGHVDAGKST+ G +L + G V+++ +HK EKE+REAGKSSF  AWVMD D+EER+ GVT+DV   Y ET TK +TLLDAPGHRDFIPKMI+GA+ AD AVLV+PA +GEFE+ F+ +GQTKEH ML ++LGV+Q++V +NK+D+ +  W +ER+D +
Sbjct:  242 GGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKKLMHKYEKESREAGKSSFAYAWVMDADEEERSRGVTMDVGTSYFETATKHLTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVIGEFEAAFENSGQTKEHTMLVRSLGVSQMVVAVNKMDMIN--WDKERFDNI 407
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BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Match: W2GDK7_PHYPR (Translation elongation factor Tu, variant 1 n=11 Tax=Phytophthora parasitica TaxID=4792 RepID=W2GDK7_PHYPR)

HSP 1 Score: 212 bits (540), Expect = 2.150e-62
Identity = 104/173 (60.12%), Postives = 138/173 (79.77%), Query Frame = 1 
Query:   91 DEGEAGGKERLAMVVIGHVDAGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEERAHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIPAALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERYDAV 609
            +E   GGK +++MVVIGHVDAGKST+ G +L + G V++R +HK EKE+REAGKSSF  AWVMD D EER+ GVT+DV   + ET+TK VTLLDAPGHRDFIPKMI+GA+ AD AVLV+PA  GEFE+ F+ +GQTKEH +L ++LGV+Q++V +NK+D+ +  W +ER+D +
Sbjct:  227 EEARTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNI 397
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9708.17709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE64_9PHAE7.760e-10281.60Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CAR8_9STRA2.780e-7874.85P-loop containing nucleoside triphosphate hydrolas... [more]
K3W8G1_GLOUD4.540e-6664.00Tr-type G domain-containing protein n=1 Tax=Globis... [more]
M4BD98_HYAAE4.550e-6561.27Tr-type G domain-containing protein n=1 Tax=Hyalop... [more]
A0A4D9D7U7_9STRA1.680e-6461.83Tr-type G domain-containing protein n=5 Tax=Monodo... [more]
H3G570_PHYRM2.210e-6460.69Tr-type G domain-containing protein n=1 Tax=Phytop... [more]
A0A5D6Y1K1_9STRA1.500e-6361.36Tr-type G domain-containing protein n=1 Tax=Pythiu... [more]
A0A833WM66_PHYIN7.100e-6360.12Elongation factor Tu GTP binding domain n=6 Tax=Ph... [more]
A0A3M6V7P3_9STRA2.060e-6261.31Tr-type G domain-containing protein n=1 Tax=Perono... [more]
W2GDK7_PHYPR2.150e-6260.12Translation elongation factor Tu, variant 1 n=11 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9708contigS-dermatodea_contig9708:878..4295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue4e-86
Seed eggNOG ortholog2880.D8LL19
Preferred nameHBS1L
KEGG koko:K12595,ko:K14416
KEGG Pathwayko03015,ko03018,ko05134,map03015,map03018,map05134
GOsGO:0000166,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003747,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0007154,GO:0007165,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0030163,GO:0030674,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034427,GO:0034620,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0040029,GO:0042221,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043928,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0070125,GO:0070478,GO:0070481,GO:0070651,GO:0070887,GO:0070966,GO:0071310,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905354,GO:1990533,GO:2000112
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG5256@1,KOG0458@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHBS1, eRF3-like GTPase involved in mRNA "no-go decay"
Ec32 orthologEc-27_000780.1
Exons4
Model size617
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9708.17709.1prot_S-dermatodea_contig9708.17709.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9708 878..4295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925426.8964658-CDS-S-dermatodea_contig9708:877..10091622925426.8964658-CDS-S-dermatodea_contig9708:877..1009Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 878..1009 -
1694079925.7681174-CDS-S-dermatodea_contig9708:877..10091694079925.7681174-CDS-S-dermatodea_contig9708:877..1009Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 878..1009 -
1622925426.910773-CDS-S-dermatodea_contig9708:1743..19531622925426.910773-CDS-S-dermatodea_contig9708:1743..1953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 1744..1953 -
1694079925.7815585-CDS-S-dermatodea_contig9708:1743..19531694079925.7815585-CDS-S-dermatodea_contig9708:1743..1953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 1744..1953 -
1622925426.928039-CDS-S-dermatodea_contig9708:3479..35751622925426.928039-CDS-S-dermatodea_contig9708:3479..3575Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 3480..3575 -
1694079925.8002791-CDS-S-dermatodea_contig9708:3479..35751694079925.8002791-CDS-S-dermatodea_contig9708:3479..3575Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 3480..3575 -
1622925426.9411466-CDS-S-dermatodea_contig9708:4118..42951622925426.9411466-CDS-S-dermatodea_contig9708:4118..4295Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 4119..4295 -
1694079925.8131754-CDS-S-dermatodea_contig9708:4118..42951694079925.8131754-CDS-S-dermatodea_contig9708:4118..4295Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9708 4119..4295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9708.17709.1

>prot_S-dermatodea_contig9708.17709.1 ID=prot_S-dermatodea_contig9708.17709.1|Name=mRNA_S-dermatodea_contig9708.17709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=205bp
AAVPTPGKSGDQSPASGVARSPCVEGPDESDEGEAGGKERLAMVVIGHVD
AGKSTLMGQVLVQTGQVTQRALHKQEKEAREAGKSSFFLAWVMDEDQEER
AHGVTIDVAQKYIETNTKLVTLLDAPGHRDFIPKMISGASAADAAVLVIP
AALGEFESGFQANGQTKEHAMLAKALGVNQLLVVINKLDVTDPPWSQERY
DAVKA
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mRNA from alignment at S-dermatodea_contig9708:878..4295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9708.17709.1 ID=mRNA_S-dermatodea_contig9708.17709.1|Name=mRNA_S-dermatodea_contig9708.17709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3418bp|location=Sequence derived from alignment at S-dermatodea_contig9708:878..4295- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCTGTGCCGACGCCGGGCAAGAGCGGGGACCAGTCCCCAGCCTCAGG
CGTGGCGCGCTCGCCTTGTGTGGAAGGGCCGGATGAGAGCGATGAGGGGG
AGGCCGGGGGCAAGGAGCGGTTGGCGATGGTGGTGATCGGACATGTGGAC
GCCGGGAAGAGCACCCTGATGGGACAGGTGATCAGGAGAGAGAGGGGCGG
GGGGGGGGGGTCGCGTATGATTTTACAGAACGCGATGTTGACCCATATTT
GTGAAGCGCGAGTTTGGGTAGGGGCGCAAGAGCACTTGGAAAGTCGTTCA
TTCGCCCCCGGCAAATATGTGTCAATAGTTATAGTGTGCGCCCTGTCAAT
CGCATACGACGGGAGGTCTTACTACTGCAGTGTCTGTTGCGCCGCATCTA
AACCGGTACAACGTGAGGTCTGTTCAGCCTGACGGCAGGGCCGTTTTCGC
CCCAACAACCCCATAGAGCGCTACAACGTTAGCGTGGGCTGCATGTATGT
GGGGTATGTACATGTGTTGTATGTACGTGCAAGAGAGAACGAAGCGGGTG
AACCTTGCTTGCCCCTCCCGTCACCATTTGGGGAAATGCCGCGGAACGGG
ACCCCTGCTTAAGCCAACATGTCCGTCTCTACGGCTACACAACACCTACA
TTGCTCGTAACACCCATATCCGACGATTGCGCTGCATGTTCGTTGATGCC
GGCGCGTTCCGAACATCCAGGTGCTGGTTCAGACGGGACAGGTGACCCAA
CGGGCGCTGCACAAGCAGGAGAAGGAGGCCAGAGAGGCCGGCAAGTCGAG
CTTCTTCTTAGCATGGGTGAGACACGCGCATCACAACGCTACGATATATT
ATACTGTGACCCGATGCGCGATGAAAACCTGAAGAGTGTATGTACCGAGG
AGAGATGGGCTAATCCCTCGTGTTCACAGACGAGATTCCGGTATGGTCGA
CTGGTCATATTTAAGAAACCACAAGCGCACCTCTTACGCAAATAGTGCAT
CGCATATCGGCAGGGCGCACAGGGTAATTACTCAAGAGTATGCCGTGGCC
GCGCAAACCCTTTGCCGCGGTTCGTGATACTACATGCCGGTGCCACTCAA
CCATTTACACGATAAGTGGCACCGCAACCTACAACGATTGCGGATGGTGT
CGTGTAGCGGGCTGCGGCGCTGCGGCCTTGATGAAACTCTGCCACCTTCC
TTACCGCGCAAAAAAAATCCACGCATCGGGCAGAAGAAGCGCGGCACAAA
CAGTACCCGCATTCGAGCCATCCTACCGGTAGGCACGAAGGGGTGTACTT
ATGTACTTATGTTAAACGCATGTCGTATCCGAACGAACAGTTGACCAAGC
GTCCCAACGATGCCGAGACGGAGCGATATGCCGGGTTTTCGCCGGCCAGG
CGGGTAGGGGGGGGGTACATTTAAAAGCATGTGGTCGGAAAGGAACACTT
AATACTATTGGCTCATAACAACGCAGCAAAGAAGTCCTGTATCACCAGGA
TATACCTCAAGGATAAAGATTCATGTCCTGTATGATACCATAACCATATA
ACACCATACATGATAATACATCATAGCATCACATGTAACAAGTGAGCTTC
CATAGGTGTAGCTTGGCCCCTCTTCCCTCTTTAACAGGTGGGACCCCAAC
GCTCGCTCTATGTTTTTGAAATATTTTTATTTTTAGGGGTACATTATACT
TCGAAGTACATTTTTTGGCCGCTTTGTTGCAGGAACTGAGCCGCGTTCTT
TAAATTACCTATTAATATAAACCAGATATCTCTTGCCCACGACAAAATAC
TCGATACCAATACTTGTACCAGTATGTTTTTTTGGCATGGACCGCTCTAT
CGGCGGACGTTCGTGGCCACCCGACAAAAAAAAAAATCTTGAGTCGTGGA
GCCGCTTTGGAAATGGCCCAAGTGCAACTATGGGTGTATCCCCTCTACCG
TACAAGTATTCATAGAATGTCTCATTCCTTATAATCCTTCTTGCGCGTGC
AAGTTTCGGAGGCGTGCGCATACTTGTACAGGGCACACCTGAAATCCACC
AGCGCTGGGGAATCGTCTTGTGGTAGGATACAAGTACACGCCGAGGTTTT
GGGCAGTGTCTACTTGCTGCTCTAGTATGACCGAGCGCCCCGTCGGAACC
CCACATGCTCGCGTTGTTATATTTGCCCGTTCAACCTATTCATATCATAG
CACCTCACCTCCCGAGAGGTTCTCCAAATTTCAACCGAAAACCTCCAGCA
GTGCAGCATGCATCTTCCCACTCGCTGCCGTTGCTCCGTCGCCACTGAAT
GGCCAAGATTTGTGTACCGCAACGATACGTGCGTCTACACAGGTCATGGA
CGAAGACCAGGAAGAGCGAGCGCACGGCGTGACCATCGACGTCGCCCAGA
AGTACATCGAGACGAACACCAAGCTTGTCACCCTTCTCGACGCCCCCGGC
CACCGCGACTTCATTCCGAAGATGATCAGCGGAGCGAGCGCGGCGGACGC
GGCGGTGCTGGTAATACCGGCGGCGCTCGGAGAGTTCGAGTCGGGTTTCC
AGGTAGGCCTGCCACCGGTAAAGTTACGAGTGAGACGTTTAATTCTCAGG
ACGCCGGTATGTTTTATGCTATTTTCAAGCCTATTTAAGGCTTTGTTTTG
AGTGTTAGCTTCGTGTGTTGAAGTTGTATTTCTATGGGGGAGAGTGGTAT
TCTTCGCTCTTCCGCTTGTTTGGGCTGGAAGAAGAGGCCAGGCTGGCTGA
TTTCGATTGAAGTCTCAACATATCAGCGTTAGGACTAATCTGGTCTTGTC
GTGAACGCATGGCGCCATTGGGTTATGGAATGGTAGTACACCCGGATGTG
CTTTAGGTCACCTGGATCGGGGGTTTTTTCCAACACCGCTTATTTCGGTA
CACGAAGCGATAGGGTTGGAAAAGGGGAGCACCGCGTAGCATCCGACTTC
TGCGGCCTACAGTACTGCACTCTCGCATATAAGCAGTATCCCGCTTGCTG
TGCCTGTTCGCCTTCCGCGGTGGCTGCTCTCGCGGTGCTTCCACGAAAAC
TGAACGCGCTCTTGTCCGTCCTTGAAGGTCTGTGTTGTCGCACTACACGC
TCAAACTCACGCCCAACCACGAGCTCACACGCCCACGTGCACAGCTACGA
TAGCTCTCCTCTCTAAGTCTGTGTCGCCCGACTGAGGGAAGAGTGCAGCG
CTACGCGTACACATTTCCACGCACAACCCTACCGAGATAGCGACACAACG
CAACACGGTGCATATGCAAACGCAACCACACCGCAGGCGAACGGGCAGAC
GAAGGAGCACGCGATGCTGGCGAAGGCGCTGGGAGTCAACCAGCTACTGG
TCGTCATCAACAAGCTCGACGTGACGGATCCCCCCTGGTCGCAGGAGCGC
TACGACGCGGTGAAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9708:878..4295-

>mRNA_S-dermatodea_contig9708.17709.1 ID=mRNA_S-dermatodea_contig9708.17709.1|Name=mRNA_S-dermatodea_contig9708.17709.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at S-dermatodea_contig9708:878..4295- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCTGTGCCGACGCCGGGCAAGAGCGGGGACCAGTCCCCAGCCTCAGG
CGTGGCGCGCTCGCCTTGTGTGGAAGGGCCGGATGAGAGCGATGAGGGGG
AGGCCGGGGGCAAGGAGCGGTTGGCGATGGTGGTGATCGGACATGTGGAC
GCCGGGAAGAGCACCCTGATGGGACAGGCCGCTGTGCCGACGCCGGGCAA
GAGCGGGGACCAGTCCCCAGCCTCAGGCGTGGCGCGCTCGCCTTGTGTGG
AAGGGCCGGATGAGAGCGATGAGGGGGAGGCCGGGGGCAAGGAGCGGTTG
GCGATGGTGGTGATCGGACATGTGGACGCCGGGAAGAGCACCCTGATGGG
ACAGGTGCTGGTTCAGACGGGACAGGTGACCCAACGGGCGCTGCACAAGC
AGGAGAAGGAGGCCAGAGAGGCCGGCAAGTCGAGCTTCTTCTTAGCATGG
GTGCTGGTTCAGACGGGACAGGTGACCCAACGGGCGCTGCACAAGCAGGA
GAAGGAGGCCAGAGAGGCCGGCAAGTCGAGCTTCTTCTTAGCATGGGTCA
TGGACGAAGACCAGGAAGAGCGAGCGCACGGCGTGACCATCGACGTCGCC
CAGAAGTACATCGAGACGAACACCAAGCTTGTCACCCTTCTCGACGCCCC
CGGCCACCGCGACTTCATTCCGAAGATGATCAGCGGAGCGAGCGCGGCGG
ACGCGGCGGTGCTGGTAATACCGGCGGCGCTCGGAGAGTTCGAGTCGGGT
TTCCAGGTCATGGACGAAGACCAGGAAGAGCGAGCGCACGGCGTGACCAT
CGACGTCGCCCAGAAGTACATCGAGACGAACACCAAGCTTGTCACCCTTC
TCGACGCCCCCGGCCACCGCGACTTCATTCCGAAGATGATCAGCGGAGCG
AGCGCGGCGGACGCGGCGGTGCTGGTAATACCGGCGGCGCTCGGAGAGTT
CGAGTCGGGTTTCCAGGCGAACGGGCAGACGAAGGAGCACGCGATGCTGG
CGAAGGCGCTGGGAGTCAACCAGCTACTGGTCGTCATCAACAAGCTCGAC
GTGACGGATCCCCCCTGGTCGCAGGAGCGCTACGACGCGGTGAAGGCGGC
GAACGGGCAGACGAAGGAGCACGCGATGCTGGCGAAGGCGCTGGGAGTCA
ACCAGCTACTGGTCGTCATCAACAAGCTCGACGTGACGGATCCCCCCTGG
TCGCAGGAGCGCTACGACGCGGTGAAGGCG
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