mRNA_S-dermatodea_contig9696.17698.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9696.17698.1
Unique NamemRNA_S-dermatodea_contig9696.17698.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9696.17698.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.360e-20
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   61 VQQGPVSDVLEALLCSTLVTSGGERILAPTFPRISAQHELKYCGPVGPLQASAMAAAISARPGVLIHLNLGGKRLGDEGA 300
            V++GP+ D L ALL ST++   G R+LAP+FP ISA  ELKY  P+GP QASA+  AI ARPGVL+ L+L GKR+GD GA
Sbjct:  279 VREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGA 358
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BLAST of mRNA_S-dermatodea_contig9696.17698.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.630e-12
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   22 RPSSFPTRRNLGTVQQGPVSDVLEALLCSTLVTSGGERILAPTFPRISAQHELKYCGPVGPLQASAMAAAISARPGVL---IHLNLGGKRLGDE 294
            RPS       L  V++GP+ D L ALL ST++   G R+LAP+FP ISA  ELKY  P+GP QASA+   I AR  +L   + +NL  +   D+
Sbjct:  264 RPSKPGEEALLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDK 357
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9696.17698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI6.360e-2060.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE6.630e-1244.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9696contigS-dermatodea_contig9696:2519..4506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_000770.1
Exons2
Model size301
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.9099486-CDS-S-dermatodea_contig9696:2518..25761622925425.9099486-CDS-S-dermatodea_contig9696:2518..2576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9696 2519..2576 -
1694079925.0727432-CDS-S-dermatodea_contig9696:2518..25761694079925.0727432-CDS-S-dermatodea_contig9696:2518..2576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9696 2519..2576 -
1622925425.9223495-CDS-S-dermatodea_contig9696:4264..45061622925425.9223495-CDS-S-dermatodea_contig9696:4264..4506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9696 4265..4506 -
1694079925.0826898-CDS-S-dermatodea_contig9696:4264..45061694079925.0826898-CDS-S-dermatodea_contig9696:4264..4506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9696 4265..4506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9696.17698.1prot_S-dermatodea_contig9696.17698.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9696 2519..4506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9696.17698.1

>prot_S-dermatodea_contig9696.17698.1 ID=prot_S-dermatodea_contig9696.17698.1|Name=mRNA_S-dermatodea_contig9696.17698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
SGALRSPRPSSFPTRRNLGTVQQGPVSDVLEALLCSTLVTSGGERILAPT
FPRISAQHELKYCGPVGPLQASAMAAAISARPGVLIHLNLGGKRLGDEGA
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mRNA from alignment at S-dermatodea_contig9696:2519..4506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9696.17698.1 ID=mRNA_S-dermatodea_contig9696.17698.1|Name=mRNA_S-dermatodea_contig9696.17698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1988bp|location=Sequence derived from alignment at S-dermatodea_contig9696:2519..4506- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGGGGCGCTTCGTTCACCTCGGCCTTCTTCTTTTCCCACGAGAAGGAA
CCTCGGTACGGTGCAGCAGGGGCCCGTGAGTGATGTCTTGGAGGCCCTAC
TATGCTCTACGCTCGTCACCAGCGGTGGAGAACGGATCCTTGCGCCGACC
TTTCCTCGCATATCGGCGCAGCACGAGCTGAAGTACTGTGGACCGGTGGG
CCCGCTGCAGGCGTCGGCGATGGCCGCAGCAATATCTGCAAGGTGAGCAC
CCCAAACGTACATAGCAAGGCACGGCATTGCTTGTCGTGTGTGCAGTGTG
TGTAATTTTCGTTTTGCTGTAGAGTGTTAACGCAGTTCCCGTACTTGTAT
GCGGTATGTAGGGGGGGGGGGGGGGTCCTCATCAGGTGCAAAACCTACAC
TCGAGCAGGTTGCATTAGAGACAACAAACAGAACGGACTTTCTCGGACCA
TAGCACCACTGCATACCACACATGGTACACAGGGGTAGGGTGTCCTGCCC
TGTGAAATATCGCAACCAATGCCGTGCCGCACGCAGAGAAATACCAGATC
TCATTATGGTGGACGAAGGCAAGCCGTTGGTACTACCATACCAGCAGCAT
GGTACCACTCAACACTGTTTCCATGTTACCACCATGGTACATGGTTTCAT
GGCACACCGTGGTATCTGGTTCCATGGCACAACCACGGTAGCGGTGCAGC
CTCGCAAAGCAAGGCCAACGCCCCCAAGAGATTGCGCGGGGCGAGTAAGT
AAGGGTTGGCAGTCGATCTACCTAGAGCCCCTCTGTAGGCGTAGGAGGCA
AAGGCGGGATGTTCTGTACCCTTTTGAGGCCGCAAGAAAAAGGTGTGGAC
TTTCATTCGTATACACAAAACAGGTACATGTACCTGGCGAGGCAGTCGCC
AGTTGTGACGGAGTCATTCCATCGCCAATTTACACTGACACGGTGCTGAC
CAACGGGTTCTACACTCTACCTCCTTAACCCCGCCCAGCGGCCGCGCCCG
GCCTGGACGGTCGATCCGCCGGGGTACGTCCTGCTGACCCAAGCGTTGCA
CTTCGGGAGTCAGTTTCCTGAACCATGTTCTAGTAGGGATATTTCATTTC
GGGCGGCCGATGAATTTATTAATCTAATCAGTTTTGTGTACAGCAGAGAC
CACCCGGATCCTGCCTGTCCCGATGAGTTTTATAAAACATAAAATTTAGT
TCACATGTACATCCCTAACTCACGGCACACTATGTTACTATGTTATCACG
GAGGACCATAGTTAACAGGTTCAAATTCGTCGCAAATTTCACCTTAAAAA
AACACTTGCAGGCCAGACATGCTTGGGTATTGTATTCATGGTCGATGTTG
TTATGATATATAGGCCAGACCCCAAGTTTTTGTTTTCATGAGGTACCTAG
GTTTTTTGTTTTGGTAATCATGGCCGGAACAGTATGGTATTTGTGGTCGT
GACAGTTGGTCCTGATTACCGTTAACCTCCCTAGCAGTACCAGGGGAAAC
CGAAAGTAGATACAAGTAACGTCCTTTAATCTCTCAGTAAGTAAAGCATA
CGTGCCGGAGGGGATTACAAGTGTACGGCCCTTTGCGTTACATGGCGTAT
AGTCGCGGCTACTGAATGTGCAACTTTTGGTTGCCCGGGTATGTCCAGCC
AACCCATGGCATATCGGTTTGACGTCGCATTACGCAAGGATGATGGCTAT
AATAGCAGCTGGTATGATATCATCCTTGTGAAATGTAGCCTAGTCTGACC
GACGAAACTCGGCATATATATCGCTCCGTCCCGACATCCGTCCCGGCATT
GCCGGGACGCGTGGTCTATCTCCGTCTGGATACGACATGCGCTTAACACA
AGTACCCTCCCCCCCCTCCCCTCCCCTCCTCTGGTGTACGAACCTGCCCG
TCAACCACTTGCTGCTGACTCAACCGACAGGCCTGGTGTTCTCATCCACC
TGAACCTCGGCGGGAAACGCTTGGGAGACGAAGGCGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9696:2519..4506-

>mRNA_S-dermatodea_contig9696.17698.1 ID=mRNA_S-dermatodea_contig9696.17698.1|Name=mRNA_S-dermatodea_contig9696.17698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9696:2519..4506- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGGGGCGCTTCGTTCACCTCGGCCTTCTTCTTTTCCCACGAGAAGGAA
CCTCGGTACGGTGCAGCAGGGGCCCGTGAGTGATGTCTTGGAGGCCCTAC
TATGCTCTACGCTCGTCACCAGCGGTGGAGAACGGATCCTTGCGCCGACC
TTTCCTCGCATATCGGCGCAGCACGAGCTGAAGTACTGTGGACCGGTGGG
CCCGCTGCAGGCGTCGGCGATGGCCGCAGCAATATCTGCAAGTCAGGGGC
GCTTCGTTCACCTCGGCCTTCTTCTTTTCCCACGAGAAGGAACCTCGGTA
CGGTGCAGCAGGGGCCCGTGAGTGATGTCTTGGAGGCCCTACTATGCTCT
ACGCTCGTCACCAGCGGTGGAGAACGGATCCTTGCGCCGACCTTTCCTCG
CATATCGGCGCAGCACGAGCTGAAGTACTGTGGACCGGTGGGCCCGCTGC
AGGCGTCGGCGATGGCCGCAGCAATATCTGCAAGGCCTGGTGTTCTCATC
CACCTGAACCTCGGCGGGAAACGCTTGGGAGACGAAGGCGCCGCCTGGTG
TTCTCATCCACCTGAACCTCGGCGGGAAACGCTTGGGAGACGAAGGCGCC
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