mRNA_S-dermatodea_contig9695.17696.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9695.17696.1
Unique NamemRNA_S-dermatodea_contig9695.17696.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: D7FQ53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ53_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 4.190e-136
Identity = 180/222 (81.08%), Postives = 201/222 (90.54%), Query Frame = 1 
Query:   70 MDGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNKQA 735
            MDGFQEVD+EYE+RMR FESDCNDGKGNAVACHQVGE+LSVVK+DFDK+G++F  NC TR H PSCFNLGRFLLAGKG+ QSDA+AEKVFDSAC +DHQPACLHLGFMHLYGG GF RD KKAI+VLD+SC+GGLADSCNMLAKQLLR DG GP PRD PRA+ LLEKGCSHNHGPSC+NLTVM K GD+GVPSDY KYR++RE+TE L+AQ QG+DGNKQA
Sbjct:    1 MDGFQEVDAEYEDRMRTFESDCNDGKGNAVACHQVGEYLSVVKNDFDKAGRIFEANCNTRNHAPSCFNLGRFLLAGKGLPQSDAQAEKVFDSACGKDHQPACLHLGFMHLYGGEGFKRDIKKAIEVLDTSCSGGLADSCNMLAKQLLRHDGKGPVPRDPPRARGLLEKGCSHNHGPSCFNLTVMLKKGDEGVPSDYKKYREYREKTESLAAQLQGIDGNKQA 222
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BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A7R9UGB8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB8_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.260e-52
Identity = 93/228 (40.79%), Postives = 133/228 (58.33%), Query Frame = 1 
Query:   64 STMDGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCA--GGLADSCNMLAKQLLRQ---------------DGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKL 696
            STM+  + VD EYEERM  +E DC +GKG   AC    EF SVVK D  ++  +F  NC    +  SCF+  R L+ GKG +QSD +A + FD +C  ++ P C H G +    G+G  +D  +A+   +S+C   G + ++C   A QLL+                D     PR+   A+KLLE+GC   HG SC+NL VMYKNGDDGVP+D AK+++++++TE+L
Sbjct:   56 STME-VRAVDKEYEERMAAYEIDCAEGKGEPYACQCAAEFFSVVKGDHPRAYTIFKRNCLENRYGASCFSTARALITGKGAEQSDEQAFEYFDKSCQLEYAPGCYHAGLLRR-AGLGTRKDVPEALKNFESACQDPGNIPEACYEKALQLLKPLEEAQSKKSSWFSWGDDRSSVPRNPEEARKLLERGCRQAHGASCFNLAVMYKNGDDGVPADAAKFQEYKKETERL 281
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: W7TNA5_9STRA (Hcp beta-lactamase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.580e-51
Identity = 94/229 (41.05%), Postives = 126/229 (55.02%), Query Frame = 1 
Query:   70 MDGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYG---GVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYN------LTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNK 729
            ++G Q +D EYEERM  FE DC+ GKG+A ACH VGEFL+VVK D++K+ K++  NC    HPPSCFNLGR  L G+G+ QSD  + K FD++C   H  AC H+G + LYG   G   ++D KKA  +L+ +C  G+ DSC  LA  LLR       P D                            L VM+K GD G+P +  ++ K+++ TE L  Q   L   K
Sbjct:    2 IEGLQAIDPEYEERMLAFEMDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCAKYSHPPSCFNLGRLYLGGRGVPQSDTRSLKCFDTSCKAGHGMACHHMGLLLLYGKDGGYDVSKDVKKATGILNKACGEGIPDSCYALASHLLRH-----LPEDKSHXXXXXXXXXXXXXXXXXXXXXXXXXLAVMHKKGDTGIPRNEQEFEKYKKVTEDLVEQTGALTWKK 225
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: F0WJI5_9STRA (Hcp betalactamaselike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJI5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.640e-41
Identity = 75/220 (34.09%), Postives = 130/220 (59.09%), Query Frame = 1 
Query:   88 VDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLL------RQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNK 729
            V+   E+R+  F+++C++GKG+ +ACH  GE+L+VV+ D++ + +++  NC    +  SCFNLGR  LAGKG++++D +A ++F+S+C++ H  AC H   M+L G +G ++D  + +  L            + +    L       ++ +    RD  RA+K   + C  N  P+CYNL VM+KNGD GV  +   Y +++++TE+L  Q +G+ G K
Sbjct:   19 VNQAIEDRLHEFKANCDNGKGDPMACHSWGEWLTVVEKDYNSAAEVYRKNCEQNCYAASCFNLGRLTLAGKGIEENDEKALELFESSCAKKHAQACQHAALMYLEG-IGTSKDVLRGLAGLXXXXXXXXXXXXSRVGSFYLDPPKIENKEQSKKLQRDPIRAKKYYGRACDANFAPACYNLAVMFKNGDTGVDKNEELYEEYKKKTEQLVNQAKGMLGVK 237
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BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A3R7G934_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G934_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.550e-40
Identity = 80/218 (36.70%), Postives = 110/218 (50.46%), Query Frame = 1 
Query:   82 QEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNKQA 735
            Q V+ + EER   F S+CNDG G+A ACH  GE+L+VV  +   + K++ +NC   ++P SCFNLGR  LAGKG+ Q+D EA ++F+ AC+  H  A                                        +A   L    N P  R+   A+  LEK C  N  P+C+NL VMYK GD  +P D  KY+++R +TEKL  Q  G+   K A
Sbjct:   13 QRVNQQLEERHYEFRSNCNDGDGDASACHSWGEWLAVVDKNHKDAAKMYELNCNKNDYPASCFNLGRLRLAGKGVDQNDHEAFRLFEKACAEGHA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVANMYLSPAVNSPIKRNVLEAKTYLEKACDANFAPACHNLAVMYKKGDVSIPKDEQKYQEYRAKTEKLIEQAGGMSSIKSA 229
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A836CDR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.120e-38
Identity = 74/206 (35.92%), Postives = 105/206 (50.97%), Query Frame = 1 
Query:   88 VDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVG---FTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKL 696
            VD +YE+RM + + DC++G+G+ VACH VGEF+S VK D   +  ++  NC+T+ +PPSCF LGR  L G G++Q+D EA ++FD AC   H  AC HLG + L+G  G                                Q LR+DG G   R                         VMYK+GDDG+P D  KY+++ ++T +L
Sbjct:    6 VDEDYEKRMDLAKMDCDEGRGDPVACHGVGEFISAVKQDRAGAAAVYAHNCKTKNYPPSCFLLGRLHLKGVGVEQNDTEAARLFDKACKGGHTQACNHLGLLLLHGSEGPHGVQSXXXXXXXXXXXXXXXXXXXXXXXXXSQFLRRDGKGVVKRXXXXXXXXXXXXXXXXXXXXXXXXAVMYKHGDDGIPIDMDKYKQYADRTNEL 211
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A0P1AVW2_PLAHL (Uncharacterized conserved protein (Contains TPR repeat) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVW2_PLAHL)

HSP 1 Score: 141 bits (355), Expect = 8.270e-36
Identity = 74/214 (34.58%), Postives = 105/214 (49.07%), Query Frame = 1 
Query:   88 VDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNK 729
            V+ +  ER   F S+CNDG G+A ACH  GE+++VV  ++  +  ++ +NC    +P SCFNLGR LLAGKG++QSD +A  +F  AC+                                              +A   L    N P  R+  +A+  LEK C  N  P+C+NL VMYK GD G+  D +KY ++R +TEKL  Q  G+   K
Sbjct:   15 VNQQLRERHYEFRSNCNDGDGDASACHSWGEWVAVVDKNYKDAATIYELNCSKSGYPASCFNLGRLLLAGKGLEQSDPDAFDLFGKACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXVATMYLSPASNSPIERNIQQAKTYLEKACDANFAPACHNLAVMYKKGDVGISKDQSKYEEYRAKTEKLIEQAGGISSIK 227
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BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A662Y1C3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1C3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.740e-35
Identity = 77/219 (35.16%), Postives = 106/219 (48.40%), Query Frame = 1 
Query:   88 VDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEK---VFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNKQA 735
            V+ + EER   F S+CNDG G+A ACH  GE+L+VV  ++  +  ++ +NC    +P SCFNLGR   A    ++S + A +    F  AC  D                                      A+SCN +A   L         RDAP+A+  LEK C  N  P+C+NL VMYK GD G+P D  KY ++R++TE L AQ  G+   K A
Sbjct:   15 VNQQLEERHYEFRSNCNDGAGDASACHSWGEWLAVVDKNYKDAAAMYELNCSKNNYPASCFNLGRLKRASIWQKRSLSTAFEGLAAFKEACEYDD-------------------------------------ANSCNRVASMYLSPPAGSAIKRDAPQAKTFLEKACDANFAPACHNLAVMYKKGDAGIPKDETKYEEYRQKTEDLIAQAGGMSSIKSA 196
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BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A8K1FNS0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNS0_PYTOL)

HSP 1 Score: 139 bits (350), Expect = 4.880e-35
Identity = 73/222 (32.88%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:   73 DGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQL---LRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNK 729
            D  + V+ + EER   F S+CNDG+G+A ACH  GE+L+VV  ++  +  ++ +NC    +P SCFNLGR  LAGKG++ +D +A  +F+ +C   H                                               L   +  +   P  RDA  A+  LEK C  N  P+C+NL VM+K GD GV    AKY ++R++T  L AQ  G+   K
Sbjct:   10 DEVRRVNQQLEERHYEFRSNCNDGEGDASACHSWGEWLAVVDKNYKDAAAMYALNCDKNNYPASCFNLGRLKLAGKGVEMNDTDAIDLFEKSCKGGHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGAMSAESRNPIKRDAVMAKTYLEKACDANFAPACHNLAVMFKKGDVGVEQSDAKYEEYRKKTNDLIAQAGGMSSVK 231
[Close]
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Match: A0A2D4BVC2_PYTIN (Hcp beta-lactamase-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVC2_PYTIN)

HSP 1 Score: 132 bits (331), Expect = 2.690e-32
Identity = 71/225 (31.56%), Postives = 109/225 (48.44%), Query Frame = 1 
Query:   64 STMDGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSGKLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQPACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADS---CNMLAKQLLRQDGNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYRKFREQTEKLSAQFQGLDGNK 729
            +T D  + V+ + EER   F S+CNDG+G+A ACH  GE+L+VV  +++ + +++ +NC    +  SCFNLGR  LAGKG+   D +A  +F+ +C                                                +M    ++      P  RDA  A++ LE+ C  N  P+C+NL VMYK GD GV  D A+Y +++++T  L AQ  G+   K
Sbjct:    7 ATPDEVRRVNQQLEERHYEFRSNCNDGEGDASACHSWGEWLAVVDKNYEAAAEMYKLNCTKNAYAASCFNLGRLKLAGKGVALDDKDAIDLFEKSCKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASMYLAGVVTPTTTNPIRRDAVLAKQYLERACDANFAPACHNLAVMYKKGDIGVEKDDARYEEYKKKTNILIAQAGGMSSVK 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9695.17696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ53_ECTSI4.190e-13681.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9UGB8_9STRA5.260e-5240.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TNA5_9STRA1.580e-5141.05Hcp beta-lactamase-like protein n=2 Tax=Monodopsid... [more]
F0WJI5_9STRA1.640e-4134.09Hcp betalactamaselike protein putative n=1 Tax=Alb... [more]
A0A3R7G934_9STRA2.550e-4036.70Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A836CDR1_9STRA2.120e-3835.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P1AVW2_PLAHL8.270e-3634.58Uncharacterized conserved protein (Contains TPR re... [more]
A0A662Y1C3_9STRA1.740e-3535.16Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8K1FNS0_PYTOL4.880e-3532.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BVC2_PYTIN2.690e-3231.56Hcp beta-lactamase-like protein n=1 Tax=Pythium in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9695contigS-dermatodea_contig9695:452..5749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.6
Seed ortholog evalue1.5e-107
Seed eggNOG ortholog2880.D7FQ53
Preferred nameCOA7
KEGG rclassRC00063,RC02819
KEGG koko:K00772,ko:K18180
KEGG ReactionR01402
KEGG Pathwayko00270,ko01100,ko04714,map00270,map01100,map04714
KEGG ModuleM00034
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Sel1 repeat
EggNOG OGsCOG0790@1,KOG4014@2759
EC2.4.2.28
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_007450.1
Exons6
Model size1306
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9695.17696.1prot_S-dermatodea_contig9695.17696.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9695 1020..5680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.7825804-UTR-S-dermatodea_contig9695:451..10191622925425.7825804-UTR-S-dermatodea_contig9695:451..1019Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9695 452..1019 -
1694079924.963565-UTR-S-dermatodea_contig9695:451..10191694079924.963565-UTR-S-dermatodea_contig9695:451..1019Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9695 452..1019 -
1622925425.8813617-UTR-S-dermatodea_contig9695:5680..57491622925425.8813617-UTR-S-dermatodea_contig9695:5680..5749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9695 5681..5749 -
1694079925.0603-UTR-S-dermatodea_contig9695:5680..57491694079925.0603-UTR-S-dermatodea_contig9695:5680..5749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9695 5681..5749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.7991533-CDS-S-dermatodea_contig9695:1019..11071622925425.7991533-CDS-S-dermatodea_contig9695:1019..1107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 1020..1107 -
1694079924.9748921-CDS-S-dermatodea_contig9695:1019..11071694079924.9748921-CDS-S-dermatodea_contig9695:1019..1107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 1020..1107 -
1622925425.8125641-CDS-S-dermatodea_contig9695:1666..18931622925425.8125641-CDS-S-dermatodea_contig9695:1666..1893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 1667..1893 -
1694079924.9835193-CDS-S-dermatodea_contig9695:1666..18931694079924.9835193-CDS-S-dermatodea_contig9695:1666..1893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 1667..1893 -
1622925425.824534-CDS-S-dermatodea_contig9695:2642..27251622925425.824534-CDS-S-dermatodea_contig9695:2642..2725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 2643..2725 -
1694079924.9938385-CDS-S-dermatodea_contig9695:2642..27251694079924.9938385-CDS-S-dermatodea_contig9695:2642..2725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 2643..2725 -
1622925425.8371494-CDS-S-dermatodea_contig9695:3259..33101622925425.8371494-CDS-S-dermatodea_contig9695:3259..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 3260..3310 -
1694079925.0112233-CDS-S-dermatodea_contig9695:3259..33101694079925.0112233-CDS-S-dermatodea_contig9695:3259..3310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 3260..3310 -
1622925425.8546011-CDS-S-dermatodea_contig9695:4415..45941622925425.8546011-CDS-S-dermatodea_contig9695:4415..4594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 4416..4594 -
1694079925.0290177-CDS-S-dermatodea_contig9695:4415..45941694079925.0290177-CDS-S-dermatodea_contig9695:4415..4594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 4416..4594 -
1622925425.868442-CDS-S-dermatodea_contig9695:5639..56801622925425.868442-CDS-S-dermatodea_contig9695:5639..5680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 5640..5680 -
1694079925.0453966-CDS-S-dermatodea_contig9695:5639..56801694079925.0453966-CDS-S-dermatodea_contig9695:5639..5680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9695 5640..5680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9695.17696.1

>prot_S-dermatodea_contig9695.17696.1 ID=prot_S-dermatodea_contig9695.17696.1|Name=mRNA_S-dermatodea_contig9695.17696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=223bp
MDGFQEVDSEYEERMRVFESDCNDGKGNAVACHQVGEFLSVVKSDFDKSG
KLFGMNCRTREHPPSCFNLGRFLLAGKGMQQSDAEAEKVFDSACSRDHQP
ACLHLGFMHLYGGVGFTRDPKKAIDVLDSSCAGGLADSCNMLAKQLLRQD
GNGPTPRDAPRAQKLLEKGCSHNHGPSCYNLTVMYKNGDDGVPSDYAKYR
KFREQTEKLSAQFQGLDGNKQA*
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mRNA from alignment at S-dermatodea_contig9695:452..5749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9695.17696.1 ID=mRNA_S-dermatodea_contig9695.17696.1|Name=mRNA_S-dermatodea_contig9695.17696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5298bp|location=Sequence derived from alignment at S-dermatodea_contig9695:452..5749- (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCTCATTGCCTCGTTCGCCCGACTGACTGGACTTGCCCCGGACGGAGG
ACTCCACCGCAGCAGCACGATGGACGGATTCCAGGAGGTAGACTCGGAGT
ATGAGGAGCGGTGAGTGTGATCGCCTGCCTTGTTTGGCTTCGCGCTGCTC
TGGTCGCGGTCCCATTCTTCGGTGGGGTAAATTGCGGGTGTATTTGTTAT
GTTGCGTGTAACGTGTCGAATGTTCTGCGGTGTTGGCTTGATCTGCTCGG
TGCTGACTGACTCTCATCGATACCACACTGCTCTAGGCTAGCATACCGGT
ACGGTTGGGTGGCGCTATGTATTCAGAGGACGTGCAAACCAGCTCGGCAG
GGCAAACCATCTCGAGTTTTCGCGATAGAGCTCGCTAGGTTGCGGCGCGA
TTTGCGTTCGTTGTGTGACTGACACCTCTCATCAATCTTGGCCCAGGAAG
AACTGGCCACGAGAGGAAGCGAGTGCCTACGTAGTGCTCCTGTGCTGGCA
GCTGGGGCATGCCGCTGGCACCCGTACAAAACTGGCCCGCGATTTCATCG
GGCACGAGCATTGCACGTGTGCTGTCGTAGACCGTGCTCTGCTCCCTGGT
TACATTTACACACACGTCATGCGGGCTAGTACCAATTAGCTGCGCTGGCT
ATATTGCGAGAGAGTCACCGACAGAGTACTGTCTGTAGTACAGCTGTAGT
CACCAATCAACACTTTCTCAAGGTTTGAGGACAGGAACGACAGAGTTAAT
TTTGTACCCGGACGTGCTTTCAAGCGCAGCACACAGCAGCAGTGTCGACC
TCTGCTGGCTCTGACTCACAAGAGCGGTAGACCAGTGATCGCCAAGCGCT
GATTTCGCCACACCCACCGGCTCTGTGCCGAACATCACAGATTGCACGTA
TTGCTCTGAAACTCACGTTACGCTCCACGCTTGCCCAATGCTGGATATAT
GATACATGACACTACACGCTGCTACTACTGCTACTACTACTACTATTAAT
CTACTATTAATACTACTACTACACACTACACTGCAGTACAGTTGTCATGT
AACACCGCCGATCGCAACGTTCAACGTTCTCGTTCATCCTCCTCAACGTC
CGAAACCCCCAAAACATGCACTTGTATGATACAAACCCCATACCACACGA
TGAAGGATGCGGGTATTCGAGAGCGACTGCAACGATGGCAAGGGCAACGC
GGTGGCTTGCCACCAGGTGGGGGAGTTCTTATCGGTGGTGAAGAGCGACT
TCGACAAGTCCGGAAAGCTATTCGGGATGAACTGCAGGACTCGGGAGCAC
CCCCCGTCGTGCTTCAATCTGGGGCGCTTCCTACGTGAGAGAGACTCCGC
AGCTATCAGTAGCTGCCGCAATTTGCGTGCTTGACCTGTTGCTTAGTGAG
AAACTCCGCAGCTATTATTTGCGTTTTTGAACTGCTCTCCGGTGAAGCCG
CATGTCAGCCGATCGGCCGTTTCATCGTTTGTCGTCTCATGAGAAAGGAG
GCGGAACACATGGGAGGCAGACGAAGGGCAGCGATTCGCGCAGTGAATGT
TCACCATGATTAAACATCGTCCAAATAGGCTGTACTTCTGAAACAGGCGC
AGGGTAAGGACTCACGCAATGCACACCATCGTAAACATATCGTCCTAAAT
GTAGGCTAGCACACGTTCCGCGCAAGCGAACGTAGAGCCAGCCGCATTTT
TAACACACGAAACGGCGCGAATACAAGAACAAGCCTTCCTATCGGTGCGA
TGGCATCCCTCACGAACCCAGACGCTAAACCCTCATCACATCACTCCCCG
GCCGAGACCCTGTTCCTCGGGTTTACGGAATGGCCACCGTCGAGTATGGT
TTGATGAGAGCTCCCTCATGTCTTCGTCTTCTATATACGCTATGATGAAT
TCACACACGTAATCTGTGGTTTGCTTATTAGAGCTATAGCAGCATCGACT
TGAACCCTCCTTGGGACTGTGGCTGTTTTCGGGGTTAGGCCATCTGTCCC
TCCCATATTTCACATCCAACCTTGACCGAACGAGCGGTGGCTACAGTACT
CCTCGCCTTGGTACCCGCGGTGAAAAAGTGGTCATAAACCGACCCCGCTT
GTCTTGCATGCACTACTACTACTACTACTACTACTATGGCGGTGCACTTG
TGCGTGCTGTCCACCCGTCTCCGCGATATATCCGAAGTGACGATGGTCTG
CGCAAAAACGTATATACTAAACTACAGTATATACTATACACTATGAACTA
TGGACTCAGTCTCATAAGGGTGAAGAGATGTAAAATTGAGCGGCGAAGTA
AAATGAGCGGGCGAATGCAGAAGAAACACCTTAGTCGAAACGATAAATAT
GTAAAAATGTGCCACCCACACCTCCCCTCCGTTCGTTGTCCCTTCGCGTT
GCGCCTCTGTGGGCCCCTTCGCCATGGCCCGACGAGCAGTGGCTGGCAAG
GGGATGCAGCAGTCGGACGCCGAAGCAGAGAAGGTTTTCGGTAAGCCCCG
CGGTTCTAAACACGTATGTACACCACTACTGCAGCAGCGGTGGCGCGCCA
CCCCCGAACAAAAGTGTCTGTAGAGAAGACGGGACGAGCGCCTCGGACGG
AGTGCATCAAGCGAAACCCACGCCCTGCCATACTTACGCGCGTGCGAAGC
TTGTCGATGCCGTCGAAGCCCGGACCGAGGAACTCAAAAAGCCCTCTTGT
GATAGGCGTGGCGTGGATTCGAGCAACGTGCGAATCCGCCTGTTTAGTCG
CACCGTGAGCACGCAAGGCCCCGCTAAAGACCAATACATGTGGTGTCGCG
CGATTATTGCTACTCGTCCCATCGGCTACGCAGACGCGCGATGAAAACGA
GTTGCACCACGACCGTCTTTTCACTTGGGAGTACCGTACATGACATTGGC
GTTCCATGGTGGCAATACAGTACACCAACGTTCTATGTGGTATGTGGCGC
GCGATGTTTGTTTTGACCTCTCCCGGCGCACGCCCAATTCTTGCCCCCGC
GTGTCCCCTGGTCGCTTTCGTTAGACTCCGCTTGCAGCAGAGATCACCAG
CCCGCGTGCTTGCATCTGGGATTCATGCACCTGTACGGCGGAGTGGGATT
CACGCGGGTGGGTCCTTTTCAGCGTGTTTCCGCGGCACGGGAGGTTGAAT
TTATTGCTGAGAACAAACCTCCCCCTGCCTGTATGTGCATGGTGACGACC
TCTTTGCAAGCAAAAACCCGATGGCATCGACAAAATACTCTGTAGTGGTC
GCTTCGAAAGCTGTGTGTGTGCATGTGTGTATACCGCGCAATAGAGCGCA
GAGGGTCGGAATGCTTTGCCTGTCTAGAAGCTCCCCCCGTACTACCGCCC
CCCCGCGCTCTTCATTTTCGTGTTGCTCTGAGTGGCACCTTCTCCTCATC
ACACAGGCAGGGAATGCGCGCCAGGTATTACTGTTGGCGGAGATTCGCTA
GATCTCCCGGGGCGTTTGTATATATTATAGTGGGTAGCCACGGCTACGCC
CCCGAGGTGCGCGTTGGCAGGGCGATGTGTGGGTTGGGAGGGCATGGTCG
CGGTAGTACCCACGGCAGGCTTTCACTCACGGAGGAAGCCGAGCGTGCGG
GGAGGGGGGCAAAAGTGTACAGGAATTAGTGACTCTATTTATTCGATAGG
GTTAACTTAGCATACGCAACTTTTTAGCATCATTTGTCAACTCTAAAAAA
ACGTGCAGAGCGATACTATTTACTAAGGATACAGTATATCAGCCGCAAAT
AAAAGCACCTATTCTAGCGAAGGTGTACCCTATTGACGAACGAATGTGAC
AGCTCCACGCGCGCCCCTATTTCCCTCCGCGTGAATACTTACCCATCCTC
CTGCAGGATCCCAAGAAAGCCATCGACGTTCTCGATTCTTCTTGCGCCGG
AGGCCTGGCGGATTCTTGTAACATGCTCGCGAAGCAGTTGCTTCGGCAGG
ATGGCAACGGGCCGACGCCGCGAGACGCCCCTCGAGCTCAAAAGCTCTTG
GAGAAGGGCTGCTCCCACAACCACGGGCCATCGTGCTACAACCTCACCGT
CATGTACAAGAACGGGGACGACGGGGTGCCGAGGTGCGGCTGACGAAACG
GTTGCTAGGTTTCCTTTTCGTCGTCTTTGCCGCGCGCGGGCGGTGTGTTT
TTGACGTGCGCGCCTCGTGGCCCGCGTGCTTGGATTTTTTCGTTTGTGAT
GGTGAATCGTTCTCACCCTACGATGATGGTTATGATACTACGCGTAAACT
ATTACAACTGTGGGGCATTGTTTTAGGAAATTTTGAATTGTGTGCAGCGT
TTTATGGCCGTGGACCCGCGGCGGTTTATTGGTGTACGTAGGCGCGCGCC
TGCTTACGCTTGCTTGCGCGTTCAAGCGGTCTTCGCACTTGGCAACATCG
CCCGTGCTTTGGTTGTGCGACATCGAGCCCGTGGGCCAAACGGCGCTGGA
ATCCCCATCTCGTCGGTGTATTCCTTGTGTCGAACTCTGGACTTGCTACT
TGTATCAAATCAACCAACTATTTTCACGCATTTTTGACGCGTTTCCCTAC
CACATGGCCTCCGTCTGCCCTATTGTCATGTGTATGATCGCCGGCTGTTG
ATGTTGTCGCGCTTTTCCCTCGACCGCATTTTCCGTGCTCAGCGACTACG
CGAAGTACCGAAAATTCAGGGAGCAGACGGAAAAACTGTCGGCGCAGTTC
CAAGGGCTGGATGGCAACAAGCAGGCGTGATTGCTGCGCGGTCTGGCCGT
GTGTGCGCGCGCGCGGATCCGTCCATTGGATCCCCCTTTCGACCTAGTCG
AATTTTTGTGGTTAAGCTAGTCCGTACCTAGCTCCTTCCGCCCTGCCGGC
GGGGGCGGGGGGGTTTTGCGCGTGGCTCCGAGGTAGGCCCTTCGCCAATA
TATCGGTTGGCCTGCCATTACGCCGCTCCATTTCTACATTATAGTATCGA
TAAAATAGTTATCATATGTATTAGTGTCGTGGACCGATGCCTCAGCGCTA
GTTTGACCCCTATTTTAGCGCTGACTTGGTGTGGCTTGGTTGAATGGCAT
TTGCCTTCGTTTGTGCCCCATGGTATACATACCGCTGTTGGTCTGGCAGA
ACAAGGAACAGGACGCGGTGGATCTCGAGGCGTTTCAATTGACGCGGACG
AGGTTTTTGCGCTATGGAAATGTTGGGATGCACATAGAAATATATGCAAT
CCTTTGGAGTTCGCTTTTTTTATTTTTCCTTTTCGTTTGGTCGCCGGTTA
TGTAAATCCCGCAAGCCAATCGTTGCAACCGGTGGGTTGAGTTAAACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9695:452..5749-

>mRNA_S-dermatodea_contig9695.17696.1 ID=mRNA_S-dermatodea_contig9695.17696.1|Name=mRNA_S-dermatodea_contig9695.17696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at S-dermatodea_contig9695:452..5749- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGGATTCCAGGAGGTAGACTCGGAGTATGAGGAGCGATGGACGGA
TTCCAGGAGGTAGACTCGGAGTATGAGGAGCGGATGCGGGTATTCGAGAG
CGACTGCAACGATGGCAAGGGCAACGCGGTGGCTTGCCACCAGGTGGGGG
AGTTCTTATCGGTGGTGAAGAGCGACTTCGACAAGTCCGGAAAGCTATTC
GGGATGAACTGCAGGACTCGGGAGCACCCCCCGTCGTGCTTCAATCTGGG
GCGCTTCCTACGATGCGGGTATTCGAGAGCGACTGCAACGATGGCAAGGG
CAACGCGGTGGCTTGCCACCAGGTGGGGGAGTTCTTATCGGTGGTGAAGA
GCGACTTCGACAAGTCCGGAAAGCTATTCGGGATGAACTGCAGGACTCGG
GAGCACCCCCCGTCGTGCTTCAATCTGGGGCGCTTCCTACTGGCTGGCAA
GGGGATGCAGCAGTCGGACGCCGAAGCAGAGAAGGTTTTCGTGGCTGGCA
AGGGGATGCAGCAGTCGGACGCCGAAGCAGAGAAGGTTTTCGACTCCGCT
TGCAGCAGAGATCACCAGCCCGCGTGCTTGCATCTGGGATTCATGCACCT
GTACGGCGGAGTGGGATTCACGCGGACTCCGCTTGCAGCAGAGATCACCA
GCCCGCGTGCTTGCATCTGGGATTCATGCACCTGTACGGCGGAGTGGGAT
TCACGCGGGATCCCAAGAAAGCCATCGACGTTCTCGATTCTTCTTGCGCC
GGAGGCCTGGCGGATTCTTGTAACATGCTCGCGAAGCAGTTGCTTCGGCA
GGATGGCAACGGGCCGACGCCGCGAGACGCCCCTCGAGCTCAAAAGCTCT
TGGAGAAGGGCTGCTCCCACAACCACGGGCCATCGTGCTACAACCTCACC
GTCATGTACAAGAACGGGGACGACGGGGTGCCGAGGATCCCAAGAAAGCC
ATCGACGTTCTCGATTCTTCTTGCGCCGGAGGCCTGGCGGATTCTTGTAA
CATGCTCGCGAAGCAGTTGCTTCGGCAGGATGGCAACGGGCCGACGCCGC
GAGACGCCCCTCGAGCTCAAAAGCTCTTGGAGAAGGGCTGCTCCCACAAC
CACGGGCCATCGTGCTACAACCTCACCGTCATGTACAAGAACGGGGACGA
CGGGGTGCCGAGCGACTACGCGAAGTACCGAAAATTCAGGGAGCAGACGG
AAAAACTGTCGGCGCAGTTCCAAGGGCTGGATGGCAACAAGCAGGCGTGA
CGACTACGCGAAGTACCGAAAATTCAGGGAGCAGACGGAAAAACTGTCGG
CGCAGTTCCAAGGGCTGGATGGCAACAAGCAGGCGTGA
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