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Homology
BLAST of mRNA_S-dermatodea_contig9694.17695.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE) HSP 1 Score: 192 bits (488), Expect = 8.420e-50 Identity = 173/388 (44.59%), Postives = 202/388 (52.06%), Query Frame = 1
Query: 325 GRVSAGEEDGIRLVGEMDISKPAYLQIQEGRDGRSDTLLVSQFGLTRGGAVSRIDLDPPPRFPRLLSGEEGXXXXXXXXXXXXXXXXDVMARRAQPRLMGTWGGPLLWPNEVNEVPHE-----ALVRLT----------------QGEDAEARYLAGDTRDVAEGGEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMSPANRNKIPGLLRFESDQFSLLRLESDKFINGDDDDVYPRRPKVQP---------------APQLDPEQAEP--------AASTPPAAGADGDAAVSLDWDGRL-PER--AVLVADGFLVPGKSDGGVYVVXXXXXXXXXXXXXXRG---------GRVGG------LPVGGGSDTGERIVRLTGWKR 1302
G VS D IRLVGEM+I KPAYLQ+QEGR+GRSDTLLVSQFG TRGGAVSR+DLDPPP+ PR+ + EG XXXXXXXXXXX V++RR QPRL GTW GPLLWPNEVN+V +LVR +G +AE +YLA TR+ + XX + + P LRFES QFSLLRLESDKF +GD PR+ + APQ+ P AEP AA T +A + WDG L PE AVL+ADGFLVPGK+DGGVY+V XXXXX G R GG G S T ++IVRLT KR
Sbjct: 372 GWVSQRRGDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRMFARLEGAVGGSXXXXXXXXXXXXVLSRRTQPRLTGTWAGPLLWPNEVNQVGAAGCLAWSLVRWVTAGRASGRGGPLSVEGRGREAELKYLA--TRNGSSXXXXXXXGRQRQDSSTSRANEGGSDGLAGSGETNGNAGGAHVQQP--LRFESQQFSLLRLESDKFSDGD---CSPRKRRETXXXXXXXXXXXXXXGGAPQVPPGTAEPSLLQDGRNAAGT--SASTESPPTTLPGWDGPLLPEDGDAVLIADGFLVPGKADGGVYLVVPAAAEERXXXXXGVGVDGAARGRESRAGGKAGAGAAAAVGSSPTEDKIVRLTNPKR 750
BLAST of mRNA_S-dermatodea_contig9694.17695.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.750e-48 Identity = 138/305 (45.25%), Postives = 160/305 (52.46%), Query Frame = 1
Query: 331 VSAGEEDGIRLVGEMDISKPAYLQIQEGRDGRSDTLLVSQFGLTRGGAVSRIDLDPPPRFPRLLSGEEGXXXXXXXXXXXXXXXXDVMARRAQPRLMGTWGGPLLWPNEVNEVPHEALVRLTQGEDAEARYLAGDTRDVAEGGEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMSPANRNKIPGLLRFESDQFSLLRLESDKFINGDDDDVYPRRPKVQP------------APQLDPEQAEP--------AASTPPAAGADGDAAVSLDWDGRLPER---AVLVADGFLVPGKSDGGVYVV 1176
VS D IRLVGEM+I KPAYLQ+QEGR+GRSDTLLVSQFG TRGGAVSR+DLDPPP+ PR+ + EG XXXXXXX V++RR QPRL GTW GPLLWPNEVN+ + + G+ +G+T A GG P LRFES QFSLLRLESDKF +GD R + APQ P AEP AA T + + WDG LP AVL+ADGFLVPGK+DGGVY+V
Sbjct: 89 VSRRRGDAIRLVGEMNIDKPAYLQVQEGRNGRSDTLLVSQFGFTRGGAVSRVDLDPPPQLPRIFARLEGAVSRSAAXXXXXXXGG-VLSRRMQPRLTGTWAGPLLWPNEVNQDISASRAKEGGGDSLAG---SGETNGSAGGG------------------------------AHVQQP---------LRFESQQFSLLRLESDKFSDGDRPPRLRRETEAAALPLPVTGAGAGGAPQAPPNTAEPSLLQDGRNAAGTSASTQSPPPPPTLPGWDGPLPPEDGDAVLIADGFLVPGKADGGVYLV 350
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1329 |
| Cds size | 1329 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9694.17695.1 >prot_S-dermatodea_contig9694.17695.1 ID=prot_S-dermatodea_contig9694.17695.1|Name=mRNA_S-dermatodea_contig9694.17695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=443bp
QALPLPCNIQLVPRVERRSLVYVNGAEVAPRLVDQVGHRRAPGGGTLPAA VTAKMPSGGRVASLGLSLAAAAAVAASVAGGGAEVGEGFGEVGEGGGGEG RASGVGVRGRVSAGEEDGIRLVGEMDISKPAYLQIQEGRDGRSDTLLVSQ FGLTRGGAVSRIDLDPPPRFPRLLSGEEGAAAAAAAAAAAAAAADDVMAR RAQPRLMGTWGGPLLWPNEVNEVPHEALVRLTQGEDAEARYLAGDTRDVA EGGEERNGSTTATSSSSSSSGGGDENNSVRGGGGGAMSPANRNKIPGLLR FESDQFSLLRLESDKFINGDDDDVYPRRPKVQPAPQLDPEQAEPAASTPP AAGADGDAAVSLDWDGRLPERAVLVADGFLVPGKSDGGVYVVVPPQEEEE GESGGGRGGRVGGLPVGGGSDTGERIVRLTGWKRWVGRWGGWV back to topmRNA from alignment at S-dermatodea_contig9694:894..5004- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9694.17695.1 ID=mRNA_S-dermatodea_contig9694.17695.1|Name=mRNA_S-dermatodea_contig9694.17695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4111bp|location=Sequence derived from alignment at S-dermatodea_contig9694:894..5004- (Saccorhiza dermatodea SderLu1190fm monoicous) CAGGCGCTGCCTCTACCCTGCAACATCCAGCTCGTCCCGCGAGTGGAGCG
CAGGTCTCTAGTATACGTTAACGGCGCGGAGGTTGCTCCGCGATTAGTAG
ACCAGGTCGGTCACCGCCGCGCGCCCGGCGGTGGGACGTTACCAGCGGCC
GTGACCGCGAAGATGCCGTCCGGCGGCCGCGTTGCGTCGCTCGGTCTGTC
TCTGGCGGCGGCGGCCGCGGTGGCAGCATCTGTTGCTGGGGGCGGCGCGG
AGGTCGGTGAGGGGTTTGGAGAAGTGGGCGAGGGCGGTGGTGGGGAGGGG
CGCGCTTCTGGTGTTGGTGTACGGGGGCGTGTTTCGGCCGGGGAAGAGGA
CGGCATTCGATTGGTGGGAGAGATGGATATCTCGAAGCCCGCCTACCTGC
AGGTTTGAAAAAAGGAGGGGTAGCTACGTAGTGATGGTTTCTTTAGAGGC
GTTTATTTCGTGAGGTTGAGGTTCGAGGGGGGTATAGGGGGAGAGGGGGG
CTGTTTGTTGTACTAAGCAGTCATTCCACAACAGTCAGACAAAGGTCGTA
TGGGTGTACTATGCTCAACTCACCAGAGAGACGAACAGAAGGGCTCAATC
AAGAAAAATCGATACTTACAAGTACAACAAGATAGAGTATATGGTAGAAA
AGAATAATGACATCTTCTTGGCTCATAAAAGCACATCAAAGATACATCAC
CAGGATATGGCTCTCAGGCAAAGACTCCTCTACAATAACCAGGTACATGA
TAAGACACCATAGCATCATATCTAAGAAGTGAGCCTCCACAGGTGTAGCT
TAGACCATCTTCCCTCTTGAAAAGGCGGGACCCCAACACTCGCTCTATGT
TTCTGTTTCTGTTTTTTTTTTTTGGGGAGGGTGGGGTTTAGTGGTCACGC
ACATAAGTCACCACACCTATTATTAACTCTCACCGTGGTACAACTATCTT
ATGCACGCTAGAGTGGATCTCTTCTTGAAGCGAGGTTTTGAACACCAAGG
TCTCATCCTCTCTTTGTTGTTTAGTTTTTTGGGGGGGGTGGTTGTACTCA
TTGATCGTGCATGCCGTAGTCGTTATACCATTGTTTTTTTTGGGGGGGGG
GGATGGGCAGCTCCATAGGTGTAGCTTGGACCATCTTCCCTCTTGAAAAG
GTGGAACCCCAACGCTCGCTCTGTGTTTCTGAAATCTGAATTATTTAGGG
GGTTTGGGCAGGGAAGGGATATGTGAATACGGTCGGGCGTTCTCACGCCG
ACATACTTACACTACTTTTGTTGCGGAGGGTAGAACTCTAACTCTATGCA
TAATATTTTACTATTAATAACTGTTTGTGCGCACCGGCACCCTCGTTGAC
ACAGGAGGGGTACACTCGAGGTGTCATGAGATTATTCCCACTCTGTATCC
TACGGTTTCGTGCACCAGAACACATCGCTGCCTTAAGCGTGTGTCACGGC
GTTGGGTAGCTTTGCCTAGCGGTCCGCCCGGTGGCGCTCGACCGATGCGT
ACAGCGGTACTTATAGCATTGACGCGCTGCCGGGATTGATCAACCAAGTC
GCAAGTTGAGAAACGTTAACGTTTCGCGTTCGTTGAAAAAGCCTGGACTT
TTTAAGGTGAAGCGGCTTTCCACACGTACGTACGCTCGAGGCTCACACAC
GCACACACCCATATGCACGTGACTTCTCTCACGAAACGCACTTCACTTTG
CCTGCTATCAATACGTTTTTTTCTGGGTACCGTGACACTCTTGCAGATGA
GAAGAGCGGTCGGCTGCCGTATCTGTTCGCGTCGTGTTCCCCCTCTCCTC
CAAAACAAAAACAACAAAATATCTATAAAACACAGAGCGAGCGTTCGGGT
CCACTCCAACTTTTTTGTAGTGGAAAAGATGTTCCAAGCTAACTCATTGA
AGGTCTACGTTATATGCGATGCTCTATGGCCGTACTGTACTAAAGCTGTG
CTGTATACTACTTTGAAGACGGCTCCCGATTGGGTACTGTACAATGACGT
CTTCCGATTGCCAGCTGTCCCGGTATCCTTCCCCCCCGCCGCCCCCCGCA
GCTATCGGCGGTCAGATGATCTTCACAATTGGCAAATCAGGTGCTCAAAT
TTCCGCCTACTCCCTTCCCTCCCGACGCCCCCCGCTCCCCGTTGCCTGCG
CCACACCGCACCACACTGCCACCGCACCGCAACCCCTGCATCATCTCCGA
ACACTCTATACTTGTGACCCAGATACAAGAGGGGAGAGACGGCCGATCGG
ACACCCTGCTCGTCTCCCAGTTCGGTCTTACCCGCGGCGGTGCGGTGTCG
CGAATCGACCTCGACCCGCCGCCGCGCTTTCCGCGGCTCTTGTCCGGAGA
GGAAGGTGGGGCGGCGGCGGCAGGGTCAGGGTCAGGGCGAGGGCCAGGGG
CGGCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCGGCCGACGAT
GTCATGGCGCGCAGGGCGCAGCCAAGGCTGATGGGCACATGGGGGGGTCC
TCTGCTGTGGCCGAATGAGGTCAACGAGGTGGGCGGGGTCGCGTCTTGTC
CAGTATCTCGTCGCGTTGTCTTGTGTTAACTCTCTCGCTCGTGATATGGT
TTATAGTAGGGAGCAATGAGGCGGTGTATAGAGTGCTGTGTTCGTTCGCC
TCTGGTGAGGCCTTGTCTCGTGTCTTGGAAGGTGGGCGTGCTTGCTGACT
TCCTGACTGACCGAGGTTTGCCGGGAGGGGGGGGGGGGGGGGGGGGGGGG
GTGCAAAAAGGGGTTGGTTTTTGTTGTTGGGTGTTGAGGGCCCCTCGGGC
GGGGGTGTAATAGGGGGGGGCCCCGGCGGGAAACCGGGTGCGGAGGGCCG
TCNNNNNNNNNNGTTTTGGGGGGGTGTTGGGTTGTTTTGTGGGGTGGTGG
GGGGGGGGGGTTGTTTTGTGGTTGTTGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGTTGCGTGCTGCAATAATGGTTTGTTTTTTGT
GCTTGGGTGCTGATGGCCCCTCGGGCATGAGTATAATAGGGCGTGCTCAC
AGCGGTAAACTGTATACGACGGTGACTCCCTTTGGTGCCGTTGTGACCTG
GCAGTAGTTGCGGAGATACCGTTTATTGGCGAGGATTGCGAGCGAGCGAG
CGGCGTCGCTCCTGTACGGCTAAGAGGCATCCAGCTTGTTGCAACCGTTG
GAGACAACGCGCATTGCCCACCCTTGTTTTTCTAGTACACAGTGCTGCGG
TGCATTAAAACGTCGCCAAAACGTTTCTTTGGGGAACAGCGTTGCGGCCG
CGATCGCCTGACGCGAATATTTTTGTCTGGCTGCACCCCCGTCCTCTCTC
CTCCTGTAACCTCTTCGTTCCCGGAACAACACCGCTGTATGCCACTGCTG
CTGTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCCCCCAAAGGT
GCCTCACGAGGCGCTTGTTCGACTGACCCAAGGAGAGGATGCCGAGGCTC
GCTACCTCGCCGGCGACACCCGAGACGTCGCCGAGGGCGGGGAGGAACGC
AACGGTAGCACCACCGCCACCAGTAGCAGCAGCAGCAGCAGCGGCGGTGG
CGACGAAAACAACTCCGTACGTGGTGGCGGTGGCGGCGCAATGTCCCCCG
CCAACCGGAACAAGATCCCCGGCTTGTTGCGGTTCGAGAGCGACCAGTTC
AGCCTCCTCCGCCTCGAGTCCGATAAGTTCATCAACGGAGACGATGACGA
TGTCTACCCGCGCCGCCCTAAGGTGCAGCCGGCACCGCAACTCGACCCCG
AACAGGCCGAACCCGCGGCCTCGACACCTCCCGCCGCCGGGGCAGACGGC
GACGCCGCCGTGTCCCTTGATTGGGACGGGCGCTTGCCGGAGCGAGCCGT
TCTGGTCGCGGACGGGTTTCTCGTGCCCGGAAAGTCGGACGGCGGGGTGT
ACGTGGTGGTGCCCCCGCAGGAGGAGGAGGAGGGTGAGAGCGGCGGCGGC
AGGGGCGGCAGGGTCGGTGGCTTGCCGGTCGGGGGTGGGAGCGATACCGG
CGAGAGAATCGTGCGGCTTACCGGTTGGAAGAGGTGGGTGGGTCGGTGGG
GTGGATGGGTC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9694:894..5004- >mRNA_S-dermatodea_contig9694.17695.1 ID=mRNA_S-dermatodea_contig9694.17695.1|Name=mRNA_S-dermatodea_contig9694.17695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2658bp|location=Sequence derived from alignment at S-dermatodea_contig9694:894..5004- (Saccorhiza dermatodea SderLu1190fm monoicous) CAGGCGCTGCCTCTACCCTGCAACATCCAGCTCGTCCCGCGAGTGGAGCG CAGGTCTCTAGTATACGTTAACGGCGCGGAGGTTGCTCCGCGATTAGTAG ACCAGGTCGGTCACCGCCGCGCGCCCGGCGGTGGGACGTTACCAGCGGCC GTGACCGCGAAGATGCCGTCCGGCGGCCGCGTTGCGTCGCTCGGTCTGTC TCTGGCGGCGGCGGCCGCGGTGGCAGCATCTGTTGCTGGGGGCGGCGCGG AGGTCGGTGAGGGGTTTGGAGAAGTGGGCGAGGGCGGTGGTGGGGAGGGG CGCGCTTCTGGTGTTGGTGTACGGGGGCGTGTTTCGGCCGGGGAAGAGGA CGGCATTCGATTGGTGGGAGAGATGGATATCTCGAAGCCCGCCTACCTGC AGCAGGCGCTGCCTCTACCCTGCAACATCCAGCTCGTCCCGCGAGTGGAG CGCAGGTCTCTAGTATACGTTAACGGCGCGGAGGTTGCTCCGCGATTAGT AGACCAGGTCGGTCACCGCCGCGCGCCCGGCGGTGGGACGTTACCAGCGG CCGTGACCGCGAAGATGCCGTCCGGCGGCCGCGTTGCGTCGCTCGGTCTG TCTCTGGCGGCGGCGGCCGCGGTGGCAGCATCTGTTGCTGGGGGCGGCGC GGAGGTCGGTGAGGGGTTTGGAGAAGTGGGCGAGGGCGGTGGTGGGGAGG GGCGCGCTTCTGGTGTTGGTGTACGGGGGCGTGTTTCGGCCGGGGAAGAG GACGGCATTCGATTGGTGGGAGAGATGGATATCTCGAAGCCCGCCTACCT GCAGATACAAGAGGGGAGAGACGGCCGATCGGACACCCTGCTCGTCTCCC AGTTCGGTCTTACCCGCGGCGGTGCGGTGTCGCGAATCGACCTCGACCCG CCGCCGCGCTTTCCGCGGCTCTTGTCCGGAGAGGAAGATACAAGAGGGGA GAGACGGCCGATCGGACACCCTGCTCGTCTCCCAGTTCGGTCTTACCCGC GGCGGTGCGGTGTCGCGAATCGACCTCGACCCGCCGCCGCGCTTTCCGCG GCTCTTGTCCGGAGAGGAAGGGGCGGCGGCTGCGGCTGCGGCTGCGGCTG CGGCTGCGGCTGCGGCCGACGATGTCATGGCGCGCAGGGCGCAGCCAAGG CTGATGGGCACATGGGGGGGTCCTCTGCTGTGGCCGAATGAGGTCAACGA GGGGCGGCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCGGCCGA CGATGTCATGGCGCGCAGGGCGCAGCCAAGGCTGATGGGCACATGGGGGG GTCCTCTGCTGTGGCCGAATGAGGTCAACGAGGTGCCTCACGAGGCGCTT GTTCGACTGACCCAAGGAGAGGATGCCGAGGCTCGCTACCTCGCCGGCGA CACCCGAGACGTCGCCGAGGGCGGGGAGGAACGCAACGGTAGCACCACCG CCACCAGTAGCAGCAGCAGCAGCAGCGGCGGTGGCGACGAAAACAACTCC GTACGTGGTGGCGGTGGCGGCGCAATGTCCCCCGCCAACCGGAACAAGAT CCCCGGCTTGTTGCGGTTCGAGAGCGACCAGTTCAGCCTCCTCCGCCTCG AGTCCGATAAGTTCATCAACGGAGACGATGACGATGTCTACCCGCGCCGC CCTAAGGTGCAGCCGGCACCGCAACTCGACCCCGAACAGGCCGAACCCGC GGCCTCGACACCTCCCGCCGCCGGGGCAGACGGCGACGCCGCCGTGTCCC TTGATTGGGACGGGCGCTTGCCGGAGCGAGCCGTTCTGGTCGCGGACGGG TTTCTCGTGCCCGGAAAGTCGGACGGCGGGGTGTACGTGGTGGTGCCCCC GCAGGAGGAGGAGGAGGGTGAGAGCGGCGGCGGCAGGGGCGGCAGGGTCG GTGGCTTGCCGGTCGGGGGTGGGAGCGATACCGGCGAGAGAATCGTGCGG CTTACCGGTTGGAAGAGGTGGGTGGGTCGGTGGGGTGGATGGGTCGTGCC TCACGAGGCGCTTGTTCGACTGACCCAAGGAGAGGATGCCGAGGCTCGCT ACCTCGCCGGCGACACCCGAGACGTCGCCGAGGGCGGGGAGGAACGCAAC GGTAGCACCACCGCCACCAGTAGCAGCAGCAGCAGCAGCGGCGGTGGCGA CGAAAACAACTCCGTACGTGGTGGCGGTGGCGGCGCAATGTCCCCCGCCA ACCGGAACAAGATCCCCGGCTTGTTGCGGTTCGAGAGCGACCAGTTCAGC CTCCTCCGCCTCGAGTCCGATAAGTTCATCAACGGAGACGATGACGATGT CTACCCGCGCCGCCCTAAGGTGCAGCCGGCACCGCAACTCGACCCCGAAC AGGCCGAACCCGCGGCCTCGACACCTCCCGCCGCCGGGGCAGACGGCGAC GCCGCCGTGTCCCTTGATTGGGACGGGCGCTTGCCGGAGCGAGCCGTTCT GGTCGCGGACGGGTTTCTCGTGCCCGGAAAGTCGGACGGCGGGGTGTACG TGGTGGTGCCCCCGCAGGAGGAGGAGGAGGGTGAGAGCGGCGGCGGCAGG GGCGGCAGGGTCGGTGGCTTGCCGGTCGGGGGTGGGAGCGATACCGGCGA GAGAATCGTGCGGCTTACCGGTTGGAAGAGGTGGGTGGGTCGGTGGGGTG GATGGGTC back to top
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