mRNA_S-dermatodea_contig9690.17692.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9690.17692.1
Unique NamemRNA_S-dermatodea_contig9690.17692.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9690.17692.1 vs. uniprot
Match: A0A6H5KYE5_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE5_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 1.190e-116
Identity = 404/810 (49.88%), Postives = 449/810 (55.43%), Query Frame = 1
Query:   61 MADWAAAAAAWAQSGEGEKNVFVPXXXXXXXNGQQHMQXXXXXXXXXXXXXXEGWGGGEAVSHQMQWMS-HQMNPAA-SRGHQG-----FGS-GGGADPMGAMGHQGPPGGTLFEHGGPPVPXXXXXXXXXXXXXXNM--DQGHFFHDQGWAGGSGYPAXXXXXX-GQPLSPNQAHMGGHMTAPVNXXXXXXXXXXXXXXXXTQAGGHMGGVGGQMPQVRQMPAGQQIPPQQQP--GIGAYPPLPATN--HPGVASIPSVGGGIAHGMGGPGPSGVGAINGGMMXXXXXXXXXXXXXXX----------PIPQRAAKKVPDWLVQTLKEKEALAEKQKKKVGVSLSTDVASSLPGGAGNISGYNLVHSPSPSPPGSPADRRGAGDARGKPSWQDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVKPSGILKKSGTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXTRAAFDREIRRLLTQLLKEGTANISREVASSAAEEARHSADAAEAARRLAAAPQXXXXXXXXXXXXXXX--AIGALIGGYGSGSASESDAGVSPAQGAAPSATISGDVSGAGERGREASNSVAAVESAPSPTHVRKPQIMVGGKWPLPTWADPPHEAALPDGVSVVVETIGPNLERVKMQELAFSTTVMGRFEEQCGFVVEDSSASRCHAAILVGADKNVHVVDIFSANGTAVNGKKMHPGVLQPLSSGGVLTLGTRNQSFRVIVRLAP--RQEAPAQVSAPAAAAAVPVGGPTSGAPVVTXXXQASSAPPQHKEDLVALAATIAARINSK 2403
            MADWAAAAAAWAQSGEGEK  FVPXXXXXXX                       WGG +    Q  WM  HQM+ AA +  HQG     FGS  GG+DPM   GHQG  G     H  PP+P      XX      +   +QG FFH+QGWA   GY  XXXXXX GQP +P              XXXXXXXXXXXXXXXX         +GG M  + +M               + AY   P  N  HP   + P  G      MGG              XXXXXXXXXXXXXXX          P+PQR AKKVPDWLVQTLKEKE LAEKQKKK G SLSTDVA++L  GAGNISGYNLVHSPSPSPP SP+ RR       KPSWQ+D                                        +  KPSGILKK GTK+R                           TRA+FDREIRRLLT LLK GTANI REVASSA EEA+ S               XXXXXXXXXXXXXXX  A+GALIGGYGS    ES                                   AVE        ++  + VGGKWPLP+WADPPHEA LP+G+S+VVETIGP+LERVK QEL+FSTTVMGRFEEQCGFVVED+SASRCHAAIL    K+V VVDIFSANGTAVNGKK+ PGVL  LS+GGVLTLGTRNQSFRVIVR  P  R+E P    +P A+A V    P  G+       + S  PP+ K+DLVALAATIAARIN+K
Sbjct:    1 MADWAAAAAAWAQSGEGEKTQFVPXXXXXXXXXXXXXXGA--------------WGGAD---QQQLWMPPHQMDHAAVASAHQGHQQHSFGSLPGGSDPMAGGGHQGF-GQEGVSHTAPPLPPPPSMQXXFPPAASSNVNEQGQFFHEQGWAAAGGYXXXXXXXXXGQPXAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MGGPMAPMSEMGGXXXXXXXXXXXHAMEAYQGSPVGNALHPAAMASPMTG------MGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAFLAGPAPVPQRPAKKVPDWLVQTLKEKEKLAEKQKKKKGASLSTDVAAALSSGAGNISGYNLVHSPSPSPPDSPSARRT------KPSWQEDDSDDDSADETSFKRENRDKRASNGSAADGSAGAGTR---NDSAKPSGILKKGGTKQRGAEGGLDRNGDDATAEADTAPLVMDDETRASFDREIRRLLTHLLKVGTANIIREVASSALEEAQDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAVGALIGGYGS----ESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAVE--------KRAHVKVGGKWPLPSWADPPHEAPLPEGLSIVVETIGPDLERVKTQELSFSTTVMGRFEEQCGFVVEDASASRCHAAILASG-KDVFVVDIFSANGTAVNGKKIQPGVLHALSAGGVLTLGTRNQSFRVIVRSTPPPRREDP---RSPTASANVTSPSPAGGS---AQPPKVSDTPPKFKQDLVALAATIAARINTK 757          
BLAST of mRNA_S-dermatodea_contig9690.17692.1 vs. uniprot
Match: D7FPI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI9_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 5.700e-79
Identity = 216/381 (56.69%), Postives = 236/381 (61.94%), Query Frame = 1
Query:  916 IPQRAAKKVPDWLVQTLKEKEALAEKQKKKVGVSLSTDVASSLPGGAGNISGYNLVHSPSPSPPGSPADRRGAGDARGKPSWQDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNG-VKPSGILKKSGTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXTRAAFDREIRRLLTQLLKEGTANISREVASSAAEEARHSADAAEAARRLAAAPQXXXXXXXXXXXXXXXAIGALIGGYGSGSASESDAGVSPAQGAAPSATISGDVSGAGERGREASNSVAAVESAPSPTHVRKPQIMVGGKWPLPTWADPPHEAALPDGVSVVVETIGPNLERVKMQELAFSTTVMGRFEEQCGFVVEDSSASRCHAAIL 2055
            +PQR AKKVPDWLVQTLKEKE LAEKQKKK G SLSTDVA++L  GAGNISGYNLVHSPSPSPP SP+ RR       KPSWQ+D    XXXX                 XXXXXXXXX     RNG  KPSGILKK GTK+R                           TRA+FDREIRRLLT LLK GTANI REVASSA EEA+ S               XXXXXXXXXXXXX  A+GALIGGYGS    ES                                   AVE        ++  + VGGKWPLP+WADPPHEA +P+G+S+VVETIGP+LERVK QEL+FSTTVMGRFEEQCGFVVED+SASRCHAAIL
Sbjct:   51 VPQRPAKKVPDWLVQTLKEKEKLAEKQKKKEGASLSTDVATALSSGAGNISGYNLVHSPSPSPPDSPSARRT------KPSWQEDDSDDXXXXEASPKRANRDKRASNGSXXXXXXXXXT----RNGSAKPSGILKKGGTKQRGAVGGLDRNGDDATAEADTAPLVMDDETRASFDREIRRLLTHLLKVGTANIIREVASSALEEAQDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAVGALIGGYGS----ESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAVE--------KRAHVKVGGKWPLPSWADPPHEAPIPEGLSIVVETIGPDLERVKTQELSFSTTVMGRFEEQCGFVVEDASASRCHAAIL 409          
BLAST of mRNA_S-dermatodea_contig9690.17692.1 vs. uniprot
Match: A0A7S1CHD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHD3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.730e-9
Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 1792 ESAPSPTHVRKPQIMVGGK-WPLPTWADPPHEAALPDGVSVVVETIGPNLERVKMQELAFSTTVMGRFEEQCGFVVEDSSASRCHAAILVGADKNVHVVDIFSANGTAVNGKKMHPGVLQPLSSGGVLTLGTRNQSFRVIVRLAPR 2226
            + AP PT    P        +  P+WA PP  AA    + + V   G  ++ +++   A   TV+GR   Q   ++E +S SR HAAIL  +D    VVD+ S+NGT +NGK++ P     L+ G VL      + F V++ LA R
Sbjct:    3 DGAPPPTPPAAPPFRAPSSGYVPPSWAAPPSGAAR--SLRLRVSADGHVVDSIQLGTRA--ATVLGRNRAQADLLLEHTSLSRRHAAILHDSDGRSFVVDLGSSNGTRLNGKRLPPHERHELAPGDVLEFAELRRRFEVLMPLATR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9690.17692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYE5_9PHAE1.190e-11649.88FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FPI9_ECTSI5.700e-7956.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CHD3_9STRA2.730e-934.25Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9690contigS-dermatodea_contig9690:1431..6987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000750.1
Exons6
Model size3741
Cds size3681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.405506-UTR-S-dermatodea_contig9690:1430..14551622925425.405506-UTR-S-dermatodea_contig9690:1430..1455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9690 1431..1455 +
1694079924.7257001-UTR-S-dermatodea_contig9690:1430..14551694079924.7257001-UTR-S-dermatodea_contig9690:1430..1455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9690 1431..1455 +
1622925425.4182405-UTR-S-dermatodea_contig9690:1637..16721622925425.4182405-UTR-S-dermatodea_contig9690:1637..1672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9690 1638..1672 +
1694079924.7375257-UTR-S-dermatodea_contig9690:1637..16721694079924.7375257-UTR-S-dermatodea_contig9690:1637..1672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9690 1638..1672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.4306655-CDS-S-dermatodea_contig9690:1672..20001622925425.4306655-CDS-S-dermatodea_contig9690:1672..2000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 1673..2000 +
1694079924.7572632-CDS-S-dermatodea_contig9690:1672..20001694079924.7572632-CDS-S-dermatodea_contig9690:1672..2000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 1673..2000 +
1622925425.4409022-CDS-S-dermatodea_contig9690:2484..25741622925425.4409022-CDS-S-dermatodea_contig9690:2484..2574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 2485..2574 +
1694079924.767972-CDS-S-dermatodea_contig9690:2484..25741694079924.767972-CDS-S-dermatodea_contig9690:2484..2574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 2485..2574 +
1622925425.4548073-CDS-S-dermatodea_contig9690:3102..46781622925425.4548073-CDS-S-dermatodea_contig9690:3102..4678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 3103..4678 +
1694079924.7770321-CDS-S-dermatodea_contig9690:3102..46781694079924.7770321-CDS-S-dermatodea_contig9690:3102..4678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 3103..4678 +
1622925425.4667416-CDS-S-dermatodea_contig9690:5048..63371622925425.4667416-CDS-S-dermatodea_contig9690:5048..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 5049..6337 +
1694079924.7876878-CDS-S-dermatodea_contig9690:5048..63371694079924.7876878-CDS-S-dermatodea_contig9690:5048..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 5049..6337 +
1622925425.4778419-CDS-S-dermatodea_contig9690:6589..69871622925425.4778419-CDS-S-dermatodea_contig9690:6589..6987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 6590..6987 +
1694079924.801771-CDS-S-dermatodea_contig9690:6589..69871694079924.801771-CDS-S-dermatodea_contig9690:6589..6987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9690 6590..6987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9690.17692.1prot_S-dermatodea_contig9690.17692.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9690 1673..6987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9690.17692.1

>prot_S-dermatodea_contig9690.17692.1 ID=prot_S-dermatodea_contig9690.17692.1|Name=mRNA_S-dermatodea_contig9690.17692.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1227bp
MADWAAAAAAWAQSGEGEKNVFVPPPPPPPHNGQQHMQHMQQQHMQQQQQ
QHEGWGGGEAVSHQMQWMSHQMNPAASRGHQGFGSGGGADPMGAMGHQGP
PGGTLFEHGGPPVPPPPMQPPLPSPPPPNMDQGHFFHDQGWAGGSGYPAP
PPPPPGQPLSPNQAHMGGHMTAPVNGQMAEPMGNYMGDPMDTQAGGHMGG
VGGQMPQVRQMPAGQQIPPQQQPGIGAYPPLPATNHPGVASIPSVGGGIA
HGMGGPGPSGVGAINGGMMGGMIGGMGGFPPGAPPIPQRAAKKVPDWLVQ
TLKEKEALAEKQKKKVGVSLSTDVASSLPGGAGNISGYNLVHSPSPSPPG
SPADRRGAGDARGKPSWQDDSDDSADEVSPTRANREKRATNGSTGGIGST
GGGGGGVGGRNGVKPSGILKKSGTKKRGGGRVLEGDDEDEAAAAQAAASA
MDDDTRAAFDREIRRLLTQLLKEGTANISREVASSAAEEARHSADAAEAA
RRLAAAPQAQPKVKRKEQREQKKAIGALIGGYGSGSASESDAGVSPAQGA
APSATISGDVSGAGERGREASNSVAAVESAPSPTHVRKPQIMVGGKWPLP
TWADPPHEAALPDGVSVVVETIGPNLERVKMQELAFSTTVMGRFEEQCGF
VVEDSSASRCHAAILVGADKNVHVVDIFSANGTAVNGKKMHPGVLQPLSS
GGVLTLGTRNQSFRVIVRLAPRQEAPAQVSAPAAAAAVPVGGPTSGAPVV
TAAPQASSAPPQHKEDLVALAATIAARINSKPSTSEKQGAEKGKDGGGKK
KATDKTAVKKEAKAKSKRSSSSSSSSSSGSSSSSGSSSSSSSSSSSSSGS
RNRSRRRSRDNGRRRSGKQRSRGSSRGKGREERRGRKRNRSEALSSQSRS
RSRSRSGSRSRARARGGRKYRESKEERGRRRSRSKSRSRERKDKDRGGTT
KDRGGGKSRGGDRRREKSSSPSRSPSRRRGSGGKKDRDSDRGKRRGKGTA
GKSRSRSRSVEDRGSRSSKKSPEGKRGGERGGEQKSPSTNRSASRLRVAS
GKKKPIESAKGGKDEGGSHGKRSENDSRGTGAAAAADAADAGGDEKKAEE
KKSGEKKAGESKGNNSSSPSSARPAESKKRDAAANKTGKAGKAARDKKGG
KEKSESEEERRSRNGDRESEKKREKNRGSNRRHRSRSRSASPKRTEGGGR
GESKSPRGEKRAGGSSGRKSRRRSRS*
back to top

mRNA from alignment at S-dermatodea_contig9690:1431..6987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9690.17692.1 ID=mRNA_S-dermatodea_contig9690.17692.1|Name=mRNA_S-dermatodea_contig9690.17692.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5557bp|location=Sequence derived from alignment at S-dermatodea_contig9690:1431..6987+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATACTCTCACCAGGATCGGCGCAGGTGTGGGCATGCTGGACGAAGGCGT CGCCGATGATCTCGTTCGTCGGATTCGAGTTGCCCCTTTCTTGGTATCGT GGAGTGTATCCGAGGCGCCCCTTTGCAATTGATTACTACACTACTGTATA TACGCACCTGCGCCTGTTTTATTTGTCTGAAATAAAGAACCCTTCCCCTC CATACAGACGCAGGCCTGCTGGGGTTGGTGCTTTAGTGTACCATGGCCGA TTGGGCGGCGGCAGCCGCCGCTTGGGCTCAATCCGGGGAGGGAGAGAAGA ACGTCTTCGTGCCCCCACCGCCCCCGCCGCCTCACAACGGCCAGCAGCAT ATGCAGCATATGCAGCAGCAGCATATGCAGCAGCAGCAGCAGCAGCATGA GGGCTGGGGTGGCGGCGAGGCGGTCTCGCACCAGATGCAGTGGATGTCGC ACCAGATGAACCCTGCCGCATCTCGAGGGCACCAAGGCTTCGGGTCGGGC GGCGGGGCAGATCCGATGGGAGCTATGGGACACCAGGGACCTCCCGGCGG AACGCTGTTCGAGCACGGAGGTATGTGGCTGAAGGGCGCGGTGATCACAC GCGTAAAATATTGGGGCTGCTTGGCAGGGGAGCGGTGGTGTTTTTGGTGC ACGGGGTGCACGGTGCACGGCCGTGACTGTTTTTTTCAAATGCTCCGTGT AGGATATTCACGGGCTCCCCGCCCGAAGAGCTTGCGCTCCAAATGTGACG GAGCTATGATACAAACGATAGCGCTCCGATTTACTGTCTCTGAGCCAACA CTTGTGGGACTTTTTGTGTTAACTCCACAAGATATCGTGCTCTCCGTCAT GTGGGGCTCGTTTCTCGTACACAGCCCGGTTTCGCTCCTCCAAGCAATCG GCTTGCATGATGCTTGATACATGCTTGCAAGCACGATCTACTGTATTATG ACAACACAAATATGTACCATTTTGTTCTTTGCGCTCGAAGATGCGGCTTT CCCACGCCTTCTCGGCCGCCTGTACCCGTCGACCCCCTGGCTACCTGTGC GCAGGTCCACCGGTACCACCGCCTCCGATGCAGCCGCCGCTCCCCTCCCC CCCCCCTCCAAACATGGATCAGGGCCACTTCTTTCATGACCAAGGTGAGG AGTTTTGCGGCCGTCGGTGAAAGGTTGGACGTTAAAAATGGTTGATGGGT GTGTTGCGATCAGCTGAGCAAGTGGCCTTGCGCCCTATTATATATGTGTT GTATCCCCGCTCGTGTCGAAAGGACGAAGTCGCCGCGCGCTCTCAATAGC ACTAATAGCAGTGCTCCATAAAAGACTCCTGTTCCTTGTACGCCAACTGA GAGCCCACACCTACGCGACCATGTTTTGTTTTCAACCGCAACGCAAAAAC CTTCTGTCCTATTTATTCCTCATCATGGTGTATCATACAGAGTATACCCT ATTTAGCTTCAGAGCTCTCGTCTCTACCCTTCAATGAGAGCGGCAAGTCG TTCTCGAGAGAAAACCAAGTGGCTCTTGACACGCCAAGCAAGGGTGGACA CCATACAACATATAACACAAGTAGGTGCCTTATCTTGAATGTATGGCGTG TTTCACCGTGTCACCATGTGATCCATGGTTAATGACAATGCACCTATCCT CGTTGTCGGCATCCGCTTACAGGTTGGGCAGGAGGAAGTGGCTACCCCGC TCCACCTCCCCCTCCTCCTGGTCAGCCACTTTCTCCAAACCAAGCGCACA TGGGCGGACACATGACTGCTCCGGTGAACGGCCAGATGGCGGAGCCCATG GGAAATTATATGGGGGATCCAATGGACACCCAGGCGGGAGGGCACATGGG GGGGGTGGGGGGGCAGATGCCGCAAGTTCGTCAGATGCCTGCAGGGCAAC AGATACCGCCGCAGCAGCAACCAGGCATCGGTGCGTACCCACCACTCCCC GCTACCAACCACCCCGGGGTCGCCTCGATCCCCAGTGTGGGAGGGGGAAT TGCCCACGGCATGGGAGGGCCAGGTCCTAGCGGTGTCGGTGCCATCAACG GCGGCATGATGGGTGGCATGATAGGTGGCATGGGCGGCTTCCCTCCAGGT GCTCCTCCGATTCCGCAGCGGGCGGCGAAGAAAGTGCCCGACTGGCTGGT GCAAACCCTCAAGGAGAAGGAGGCGCTGGCCGAAAAGCAGAAAAAAAAAG TGGGGGTATCGCTGTCGACGGACGTGGCGTCCTCTCTGCCCGGCGGGGCG GGCAACATCAGCGGTTACAACCTCGTGCACTCCCCTTCTCCGTCCCCTCC CGGATCGCCGGCCGACCGCCGGGGCGCAGGCGACGCACGTGGTAAGCCTA GCTGGCAAGACGACAGCGACGACTCGGCGGATGAAGTGTCGCCGACGAGG GCGAACCGAGAGAAAAGAGCAACAAACGGAAGCACCGGAGGCATCGGAAG CACCGGCGGCGGCGGCGGCGGTGTCGGCGGCCGCAACGGCGTCAAACCTT CGGGTATCCTGAAAAAGAGCGGCACAAAGAAGCGCGGGGGGGGGCGGGTG CTTGAGGGGGACGACGAGGACGAAGCAGCGGCGGCACAGGCGGCGGCAAG CGCAATGGACGACGATACTCGTGCAGCGTTTGATCGAGAAATCCGACGGC TGTTGACGCAGCTTCTGAAAGAAGGGACGGCCAACATCAGCCGCGAGGTG GCCTCTTCCGCGGCAGAAGAAGCCCGTCACTCCGCCGACGCCGCCGAGGC CGCTCGCCGCCTAGCCGCGGCACCGCAGGCGCAACCGAAAGTGAAACGCA AGGAGCAGCGTGAGCAGAAAAAGGCCATCGGAGCGCTTATCGGCGGGTAT GGATCCGGGTCGGCCTCGGAGAGCGACGCTGGCGTTTCCCCTGCGCAGGG AGCCGCGCCTTCCGCGACCATCTCTGGCGATGTAAGCGGTGCGGGCGAGC GAGGGCGCGAGGCTTCAAACTCAGTTGCGGCGGTAGAGTCTGCGCCATCT CCTACGCACGTTCGGAAGCCCCAGATCATGGTGGGCGGGAAGTGGCCTCT TCCAACTTGGGCGGACCCACCGCACGAGGCTGCGCTTCCGGATGGTGTAT CGGTGGTGGTGGAGACGATAGGGCCCAATCTTGAGAGGGTGAAGATGCAG GAACTTGCTTTCAGCACGACGGTAATGGGCAGGTTCGAGGAGCAGTGCGG CTTCGTCGTCGAGGACTCGTCCGCGTCTCGGTGCCACGCGGCGATCCTGT GAGTGTGCCTCTTCGTTCGGGTCGGCGTGTTTGCCTGGCTTGCTTTTGCG TTCGATCGACTGTTTTGACCCCCAGTCCCATCCAAACGCGCCTCAAGCGC GGGTTACGTAGCATTGCAGCGCGTTTTGTTTGCTCCTGTGCCCGCCCCGG CCAGCGTCAATCGTTGGCCGCTCAAATGAGACTTGGTCGTGATTTTGGGG AAGATCCGTTTTTACACAAGATCGCGTCTGTCACAACTTCTTGTAGCAAC TTTATATTAGTACCGACTCGGATGCCTGTTCACTGCCGGTGGTCGATCTG CCCACGTTGTACACCCCTGTTTTGGAGTGCTTATACCCCGGTCCCTGATC CGCCCGTTTTTTCTCTAGTGTCGGCGCCGACAAAAACGTTCACGTGGTGG ACATCTTCTCTGCGAATGGAACAGCCGTCAACGGCAAAAAAATGCACCCT GGTGTGCTTCAGCCGCTCTCGTCAGGCGGCGTTCTAACCCTCGGCACGCG TAACCAATCCTTCCGCGTGATCGTGCGGTTAGCTCCCCGCCAAGAAGCGC CCGCGCAAGTCTCTGCCCCCGCCGCTGCAGCTGCCGTCCCGGTCGGTGGT CCCACCTCCGGTGCGCCGGTGGTCACGGCGGCGCCCCAGGCGTCCAGTGC GCCGCCGCAGCACAAAGAAGACCTCGTGGCCTTGGCGGCTACGATAGCTG CAAGAATCAACAGCAAGCCCTCCACCTCCGAGAAGCAGGGGGCAGAAAAG GGGAAGGATGGCGGGGGAAAGAAGAAGGCGACCGACAAGACCGCTGTGAA GAAAGAGGCCAAAGCCAAGAGTAAGAGAAGCAGCAGCAGCAGCAGCAGCA GCAGCAGTGGCAGCAGCAGCAGTAGTGGTAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGTGGGAGCCGCAACAGGAGTCGCCGCCGCAGCCG TGATAACGGGCGAAGGCGGTCTGGGAAGCAGAGATCCAGGGGAAGCAGTC GAGGCAAGGGGAGGGAAGAGAGGAGAGGCAGGAAAAGAAATAGGAGCGAG GCTCTCTCCAGCCAAAGCCGGAGCCGCAGCCGCAGCCGGAGTGGTAGCCG CAGCCGTGCGAGGGCCAGGGGCGGAAGGAAATATCGGGAGAGCAAGGAGG AGAGAGGCAGAAGGAGGAGCCGCAGCAAGAGTCGAAGCCGCGAGCGAAAA GACAAGGACAGGGGGGGGACTACGAAGGATCGAGGTGGCGGGAAGAGTCG GGGGGGCGACAGGCGACGGGAGAAGAGCTCCAGCCCCTCACGGAGTCCCA GCCGCCGCAGGGGGTCCGGCGGCAAGAAAGACAGGGACTCGGACCGGGGG AAACGGAGGGGGAAGGGCACGGCAGGCAAGAGTCGAAGCCGGAGCCGGAG CGTCGAGGACAGGGGTTCGCGGAGCTCCAAAAAGAGCCCAGAGGGGAAGC GAGGGGGGGAACGGGGCGGGGAACAAAAAAGCCCGAGCACGAACCGTAGC GCGAGTCGCCTTCGCGTCGCGAGCGGCAAGAAGAAGCCGATCGAGAGTGC GAAGGGCGGGAAAGACGAGGGGGGATCCCATGGAAAACGCAGCGAGAATG ACAGCCGTGGGACAGGTGCTGCTGCTGCTGCAGATGCTGCAGATGCCGGT GGCGATGGTGGCGACCGGAAGAAAGAGAAGGAGCCCCGAAGCGCCCCAGA TCGTTCGAGCAAACCAAATGGTGAGGTCGAGAAAATCCGGGACGAGAAGC AGGGTAAGGTCGGCAACGGCAAGGAAAGCGCCAAAGATGCTAAGAAAGCG GGAGATAAGAAGGCGGGAGAGAAAAAGACGGGGGAGAAAAAAACGGGAGA GAAGAAGGCGGAAGAGAAGAAGGCGGGAGAGAAAAAGACGGTGGAAAAAA AAACGGCAGAGAAGAAGGCGGAAGAGAAGAAGTCGGGAGAGAAAAAGGCA GGAGAGAGCAAGGGGAACAACAGCAGCAGCCCGAGCAGCGCCCGCCCGGC CGAGAGTAAAAAGCGCGACGCTGCCGCTAATAAAACGGGCAAGGCAGGGA AGGCCGCTCGCGACAAGAAGGGTGGCAAGGAGAAAAGCGAGAGCGAGGAA GAGAGGCGCAGCCGCAACGGTGACCGTGAAAGTGAGAAGAAGAGAGAAAA AAACCGGGGGTCGAATCGCCGCCACCGCAGCAGAAGCAGGTCGGCGTCCC CGAAACGAACTGAGGGTGGCGGCAGGGGGGAGAGCAAGTCTCCACGGGGA GAAAAGAGGGCCGGGGGTAGTAGTGGCAGGAAAAGTCGGAGGAGGTCGCG ATCGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9690:1431..6987+

>mRNA_S-dermatodea_contig9690.17692.1 ID=mRNA_S-dermatodea_contig9690.17692.1|Name=mRNA_S-dermatodea_contig9690.17692.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=7362bp|location=Sequence derived from alignment at S-dermatodea_contig9690:1431..6987+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGATTGGGCGGCGGCAGCCGCCGCTTGGGCTCAATCCGGGGAGGG
AGAGAAGAACGTCTTCGTGCCCCCACCGCCCCCGCCGCCTCACAACGGCC
AGCAGCATATGCAGCATATGCAGCAGCAGCATATGCAGCAGCAGCAGCAG
CAGCATGAGGGCTGGGGTGGCGGCGAGGCGGTCTCGCACCAGATGCAGTG
GATGTCGCACCAGATGAACCCTGCCGCATCTCGAGGGCACCAAGGCTTCG
GGTCGGGCGGCGGGGCAGATCCGATGGGAGCTATGGGACACCAGGGACCT
CCCGGCGGAACGCTGTTCGAGCACGGAGATGGCCGATTGGGCGGCGGCAG
CCGCCGCTTGGGCTCAATCCGGGGAGGGAGAGAAGAACGTCTTCGTGCCC
CCACCGCCCCCGCCGCCTCACAACGGCCAGCAGCATATGCAGCATATGCA
GCAGCAGCATATGCAGCAGCAGCAGCAGCAGCATGAGGGCTGGGGTGGCG
GCGAGGCGGTCTCGCACCAGATGCAGTGGATGTCGCACCAGATGAACCCT
GCCGCATCTCGAGGGCACCAAGGCTTCGGGTCGGGCGGCGGGGCAGATCC
GATGGGAGCTATGGGACACCAGGGACCTCCCGGCGGAACGCTGTTCGAGC
ACGGAGGTCCACCGGTACCACCGCCTCCGATGCAGCCGCCGCTCCCCTCC
CCCCCCCCTCCAAACATGGATCAGGGCCACTTCTTTCATGACCAAGGTCC
ACCGGTACCACCGCCTCCGATGCAGCCGCCGCTCCCCTCCCCCCCCCCTC
CAAACATGGATCAGGGCCACTTCTTTCATGACCAAGGTTGGGCAGGAGGA
AGTGGCTACCCCGCTCCACCTCCCCCTCCTCCTGGTCAGCCACTTTCTCC
AAACCAAGCGCACATGGGCGGACACATGACTGCTCCGGTGAACGGCCAGA
TGGCGGAGCCCATGGGAAATTATATGGGGGATCCAATGGACACCCAGGCG
GGAGGGCACATGGGGGGGGTGGGGGGGCAGATGCCGCAAGTTCGTCAGAT
GCCTGCAGGGCAACAGATACCGCCGCAGCAGCAACCAGGCATCGGTGCGT
ACCCACCACTCCCCGCTACCAACCACCCCGGGGTCGCCTCGATCCCCAGT
GTGGGAGGGGGAATTGCCCACGGCATGGGAGGGCCAGGTCCTAGCGGTGT
CGGTGCCATCAACGGCGGCATGATGGGTGGCATGATAGGTGGCATGGGCG
GCTTCCCTCCAGGTGCTCCTCCGATTCCGCAGCGGGCGGCGAAGAAAGTG
CCCGACTGGCTGGTGCAAACCCTCAAGGAGAAGGAGGCGCTGGCCGAAAA
GCAGAAAAAAAAAGTGGGGGTATCGCTGTCGACGGACGTGGCGTCCTCTC
TGCCCGGCGGGGCGGGCAACATCAGCGGTTACAACCTCGTGCACTCCCCT
TCTCCGTCCCCTCCCGGATCGCCGGCCGACCGCCGGGGCGCAGGCGACGC
ACGTGGTAAGCCTAGCTGGCAAGACGACAGCGACGACTCGGCGGATGAAG
TGTCGCCGACGAGGGCGAACCGAGAGAAAAGAGCAACAAACGGAAGCACC
GGAGGCATCGGAAGCACCGGCGGCGGCGGCGGCGGTGTCGGCGGCCGCAA
CGGCGTCAAACCTTCGGGTATCCTGAAAAAGAGCGGCACAAAGAAGCGCG
GGGGGGGGCGGGTGCTTGAGGGGGACGACGAGGACGAAGCAGCGGCGGCA
CAGGCGGCGGCAAGCGCAATGGACGACGATACTCGTGCAGCGTTTGATCG
AGAAATCCGACGGCTGTTGACGCAGCTTCTGAAAGAAGGGACGGCCAACA
TCAGCCGCGAGGTGGCCTCTTCCGCGGCAGAAGAAGCCCGTCACTCCGCC
GACGCCGCCGAGGCCGCTCGCCGCCTAGCCGCGGCACCGCAGGCGCAACC
GAAAGTGAAACGCAAGGAGCAGCGTGAGCAGAAAAAGGCCATCGGAGCGC
TTATCGGCGGGTATGGATCCGGGTCGGCCTCGGAGAGCGACGCTGGCGTT
TCCCCTGCGCAGGGAGCCGCGCCTTCCGCGACCATCTCTGGCGATGTAAG
CGGTGCGGGCGAGCGAGGGCGCGAGGCTTCAAACTCAGTTGCGGCGGTAG
AGTCTGCGCCATCTCCTACGCACGTTCGGAAGCCCCAGATCATGGTGGGC
GGGAAGTGGCCTCTTCCAACTTGGGCGGACCCACCGCACGAGGCTGCGCT
TCCGGATGGTGTATCGGTGGTGGTGGAGACGATAGGGCCCAATCTTGAGA
GGGTGAAGATGCAGGAACTTGCTTTCAGCACGACGGTAATGGGCAGGTTC
GAGGAGCAGTGCGGCTTCGTCGTCGAGGACTCGTCCGCGTCTCGGTGCCA
CGCGGCGATCCTGTTGGGCAGGAGGAAGTGGCTACCCCGCTCCACCTCCC
CCTCCTCCTGGTCAGCCACTTTCTCCAAACCAAGCGCACATGGGCGGACA
CATGACTGCTCCGGTGAACGGCCAGATGGCGGAGCCCATGGGAAATTATA
TGGGGGATCCAATGGACACCCAGGCGGGAGGGCACATGGGGGGGGTGGGG
GGGCAGATGCCGCAAGTTCGTCAGATGCCTGCAGGGCAACAGATACCGCC
GCAGCAGCAACCAGGCATCGGTGCGTACCCACCACTCCCCGCTACCAACC
ACCCCGGGGTCGCCTCGATCCCCAGTGTGGGAGGGGGAATTGCCCACGGC
ATGGGAGGGCCAGGTCCTAGCGGTGTCGGTGCCATCAACGGCGGCATGAT
GGGTGGCATGATAGGTGGCATGGGCGGCTTCCCTCCAGGTGCTCCTCCGA
TTCCGCAGCGGGCGGCGAAGAAAGTGCCCGACTGGCTGGTGCAAACCCTC
AAGGAGAAGGAGGCGCTGGCCGAAAAGCAGAAAAAAAAAGTGGGGGTATC
GCTGTCGACGGACGTGGCGTCCTCTCTGCCCGGCGGGGCGGGCAACATCA
GCGGTTACAACCTCGTGCACTCCCCTTCTCCGTCCCCTCCCGGATCGCCG
GCCGACCGCCGGGGCGCAGGCGACGCACGTGGTAAGCCTAGCTGGCAAGA
CGACAGCGACGACTCGGCGGATGAAGTGTCGCCGACGAGGGCGAACCGAG
AGAAAAGAGCAACAAACGGAAGCACCGGAGGCATCGGAAGCACCGGCGGC
GGCGGCGGCGGTGTCGGCGGCCGCAACGGCGTCAAACCTTCGGGTATCCT
GAAAAAGAGCGGCACAAAGAAGCGCGGGGGGGGGCGGGTGCTTGAGGGGG
ACGACGAGGACGAAGCAGCGGCGGCACAGGCGGCGGCAAGCGCAATGGAC
GACGATACTCGTGCAGCGTTTGATCGAGAAATCCGACGGCTGTTGACGCA
GCTTCTGAAAGAAGGGACGGCCAACATCAGCCGCGAGGTGGCCTCTTCCG
CGGCAGAAGAAGCCCGTCACTCCGCCGACGCCGCCGAGGCCGCTCGCCGC
CTAGCCGCGGCACCGCAGGCGCAACCGAAAGTGAAACGCAAGGAGCAGCG
TGAGCAGAAAAAGGCCATCGGAGCGCTTATCGGCGGGTATGGATCCGGGT
CGGCCTCGGAGAGCGACGCTGGCGTTTCCCCTGCGCAGGGAGCCGCGCCT
TCCGCGACCATCTCTGGCGATGTAAGCGGTGCGGGCGAGCGAGGGCGCGA
GGCTTCAAACTCAGTTGCGGCGGTAGAGTCTGCGCCATCTCCTACGCACG
TTCGGAAGCCCCAGATCATGGTGGGCGGGAAGTGGCCTCTTCCAACTTGG
GCGGACCCACCGCACGAGGCTGCGCTTCCGGATGGTGTATCGGTGGTGGT
GGAGACGATAGGGCCCAATCTTGAGAGGGTGAAGATGCAGGAACTTGCTT
TCAGCACGACGGTAATGGGCAGGTTCGAGGAGCAGTGCGGCTTCGTCGTC
GAGGACTCGTCCGCGTCTCGGTGCCACGCGGCGATCCTTGTCGGCGCCGA
CAAAAACGTTCACGTGGTGGACATCTTCTCTGCGAATGGAACAGCCGTCA
ACGGCAAAAAAATGCACCCTGGTGTGCTTCAGCCGCTCTCGTCAGGCGGC
GTTCTAACCCTCGGCACGCGTAACCAATCCTTCCGCGTGATCGTGCGGTT
AGCTCCCCGCCAAGAAGCGCCCGCGCAAGTCTCTGCCCCCGCCGCTGCAG
CTGCCGTCCCGGTCGGTGGTCCCACCTCCGGTGCGCCGGTGGTCACGGCG
GCGCCCCAGGCGTCCAGTGCGCCGCCGCAGCACAAAGAAGACCTCGTGGC
CTTGGCGGCTACGATAGCTGCAAGAATCAACAGCAAGCCCTCCACCTCCG
AGAAGCAGGGGGCAGAAAAGGGGAAGGATGGCGGGGGAAAGAAGAAGGCG
ACCGACAAGACCGCTGTGAAGAAAGAGGCCAAAGCCAAGAGTAAGAGAAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAGCAGCAGTAGTGGTA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGAGCCGCAAC
AGGAGTCGCCGCCGCAGCCGTGATAACGGGCGAAGGCGGTCTGGGAAGCA
GAGATCCAGGGGAAGCAGTCGAGGCAAGGGGAGGGAAGAGAGGAGAGGCA
GGAAAAGAAATAGGAGCGAGGCTCTCTCCAGCCAAAGCCGGAGCCGCAGC
CGCAGCCGGAGTGGTAGCCGCAGCCGTGCGAGGGCCAGGGGCGGAAGGAA
ATATCGGGAGAGCAAGGAGGAGAGAGGCAGAAGGAGGAGCCGCAGCAAGA
GTCGAAGCCGCGAGCGAAAAGACAAGGACAGGGGGGGGACTACGAAGGAT
CGAGGTGGCGGGAAGAGTCGGGGGGGCGACAGGCGACGGGAGAAGAGCTC
CAGCCCCTCACGGAGTCCCAGCCGCCGCAGGGGGTCCGGCGGCAAGAAAG
ACAGGGACTCGGACCGGGGGAAACGGAGGGGGAAGGGCACGGCAGGCAAG
AGTCGAAGCCGGAGCCGGAGCGTCGAGGACAGGGGTTCGCGGAGCTCCAA
AAAGAGCCCAGAGGGGAAGCGAGGGGGGGAACGGGGCGGGGAACAAAAAA
GCCCGAGCACGAACCGTAGCGCGAGTCGCCTTCGCGTCGCGAGCGGCAAG
AAGAAGCCGATCGAGAGTGCGAAGGGCGGGAAAGACGAGGGGGGATCCCA
TGGAAAACGCAGCGAGAATGACAGCCGTGGGACAGGTGCTGCTGCTGCTG
CAGATGCTGCAGATGCCGGTGGCGATGTGTCGGCGCCGACAAAAACGTTC
ACGTGGTGGACATCTTCTCTGCGAATGGAACAGCCGTCAACGGCAAAAAA
ATGCACCCTGGTGTGCTTCAGCCGCTCTCGTCAGGCGGCGTTCTAACCCT
CGGCACGCGTAACCAATCCTTCCGCGTGATCGTGCGGTTAGCTCCCCGCC
AAGAAGCGCCCGCGCAAGTCTCTGCCCCCGCCGCTGCAGCTGCCGTCCCG
GTCGGTGGTCCCACCTCCGGTGCGCCGGTGGTCACGGCGGCGCCCCAGGC
GTCCAGTGCGCCGCCGCAGCACAAAGAAGACCTCGTGGCCTTGGCGGCTA
CGATAGCTGCAAGAATCAACAGCAAGCCCTCCACCTCCGAGAAGCAGGGG
GCAGAAAAGGGGAAGGATGGCGGGGGAAAGAAGAAGGCGACCGACAAGAC
CGCTGTGAAGAAAGAGGCCAAAGCCAAGAGTAAGAGAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTGGCAGCAGCAGCAGTAGTGGTAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTGGGAGCCGCAACAGGAGTCGCCG
CCGCAGCCGTGATAACGGGCGAAGGCGGTCTGGGAAGCAGAGATCCAGGG
GAAGCAGTCGAGGCAAGGGGAGGGAAGAGAGGAGAGGCAGGAAAAGAAAT
AGGAGCGAGGCTCTCTCCAGCCAAAGCCGGAGCCGCAGCCGCAGCCGGAG
TGGTAGCCGCAGCCGTGCGAGGGCCAGGGGCGGAAGGAAATATCGGGAGA
GCAAGGAGGAGAGAGGCAGAAGGAGGAGCCGCAGCAAGAGTCGAAGCCGC
GAGCGAAAAGACAAGGACAGGGGGGGGACTACGAAGGATCGAGGTGGCGG
GAAGAGTCGGGGGGGCGACAGGCGACGGGAGAAGAGCTCCAGCCCCTCAC
GGAGTCCCAGCCGCCGCAGGGGGTCCGGCGGCAAGAAAGACAGGGACTCG
GACCGGGGGAAACGGAGGGGGAAGGGCACGGCAGGCAAGAGTCGAAGCCG
GAGCCGGAGCGTCGAGGACAGGGGTTCGCGGAGCTCCAAAAAGAGCCCAG
AGGGGAAGCGAGGGGGGGAACGGGGCGGGGAACAAAAAAGCCCGAGCACG
AACCGTAGCGCGAGTCGCCTTCGCGTCGCGAGCGGCAAGAAGAAGCCGAT
CGAGAGTGCGAAGGGCGGGAAAGACGAGGGGGGATCCCATGGAAAACGCA
GCGAGAATGACAGCCGTGGGACAGGTGCTGCTGCTGCTGCAGATGCTGCA
GATGCCGGTGGCGATGAGAAGAAGGCGGAAGAGAAGAAGTCGGGAGAGAA
AAAGGCAGGAGAGAGCAAGGGGAACAACAGCAGCAGCCCGAGCAGCGCCC
GCCCGGCCGAGAGTAAAAAGCGCGACGCTGCCGCTAATAAAACGGGCAAG
GCAGGGAAGGCCGCTCGCGACAAGAAGGGTGGCAAGGAGAAAAGCGAGAG
CGAGGAAGAGAGGCGCAGCCGCAACGGTGACCGTGAAAGTGAGAAGAAGA
GAGAAAAAAACCGGGGGTCGAATCGCCGCCACCGCAGCAGAAGCAGGTCG
GCGTCCCCGAAACGAACTGAGGGTGGCGGCAGGGGGGAGAGCAAGTCTCC
ACGGGGAGAAAAGAGGGCCGGGGGTAGTAGTGGCAGGAAAAGTCGGAGGA
GGTCGCGATCGTGAAGAAGAAGGCGGAAGAGAAGAAGTCGGGAGAGAAAA
AGGCAGGAGAGAGCAAGGGGAACAACAGCAGCAGCCCGAGCAGCGCCCGC
CCGGCCGAGAGTAAAAAGCGCGACGCTGCCGCTAATAAAACGGGCAAGGC
AGGGAAGGCCGCTCGCGACAAGAAGGGTGGCAAGGAGAAAAGCGAGAGCG
AGGAAGAGAGGCGCAGCCGCAACGGTGACCGTGAAAGTGAGAAGAAGAGA
GAAAAAAACCGGGGGTCGAATCGCCGCCACCGCAGCAGAAGCAGGTCGGC
GTCCCCGAAACGAACTGAGGGTGGCGGCAGGGGGGAGAGCAAGTCTCCAC
GGGGAGAAAAGAGGGCCGGGGGTAGTAGTGGCAGGAAAAGTCGGAGGAGG
TCGCGATCGTGA
back to top