mRNA_S-dermatodea_contig969.17690.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig969.17690.1
Unique NamemRNA_S-dermatodea_contig969.17690.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig969.17690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig969contigS-dermatodea_contig969:11799..15785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size266
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig969.17690.1prot_S-dermatodea_contig969.17690.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig969 11801..15785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925425.281438-CDS-S-dermatodea_contig969:11800..118471622925425.281438-CDS-S-dermatodea_contig969:11800..11847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 11801..11847 -
1694079924.6600888-CDS-S-dermatodea_contig969:11800..118471694079924.6600888-CDS-S-dermatodea_contig969:11800..11847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 11801..11847 -
1622925425.2960126-CDS-S-dermatodea_contig969:12423..125161622925425.2960126-CDS-S-dermatodea_contig969:12423..12516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 12424..12516 -
1694079924.6717308-CDS-S-dermatodea_contig969:12423..125161694079924.6717308-CDS-S-dermatodea_contig969:12423..12516Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 12424..12516 -
1622925425.3148384-CDS-S-dermatodea_contig969:15661..157851622925425.3148384-CDS-S-dermatodea_contig969:15661..15785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 15662..15785 -
1694079924.682847-CDS-S-dermatodea_contig969:15661..157851694079924.682847-CDS-S-dermatodea_contig969:15661..15785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig969 15662..15785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig969.17690.1

>prot_S-dermatodea_contig969.17690.1 ID=prot_S-dermatodea_contig969.17690.1|Name=mRNA_S-dermatodea_contig969.17690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
VIKTQARVCPITESKPSSSLAQHRTAVYRTSKSSVSMLGATENLEVTGCN
ISAGSVDSVQGEAAASTLENVADGGRFLGAVYVVLSDH
back to top

mRNA from alignment at S-dermatodea_contig969:11799..15785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig969.17690.1 ID=mRNA_S-dermatodea_contig969.17690.1|Name=mRNA_S-dermatodea_contig969.17690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3987bp|location=Sequence derived from alignment at S-dermatodea_contig969:11799..15785- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAATCAAGACGCAAGCACGTGTGTGCCCTATCACGGAGAGCAAGCCTTC
TTCAAGTCTGGCGCAACACCGAACTGCTGTGTACCGCACAAGCAAGTCAT
CTGTCAGCATGCTGGGCGCTACAGGTGAGAGTTGTAGCGGGTCTTTGCTG
TTGTTTGATGCTGCGGTTGGTGCCTTGGGTTTCCCCCGATTATCGGTTCG
GCGAATTAAGTCTTATTACAGATAACACACCAGACACGAATACATACAGA
ACGGTCCGTACATACATTGCACATGTCGACTTACATTTGTGGACAATGGT
TGGCATTTGTAACTAGTACAGGGTATCCTATTAATATACTGATTCGTTCA
CATGCCCCAACTCAAACCCTAGTCCGACCCACACAACAAGTAGAATTGGC
TGAATGCGCTTTAGATAGGTCGGCGTGACCAAATAGGTATGGTGTTGTTC
GGGCGACGAGCTGATGGGATATAAACATAACATTACATAGCGAGGACCAG
CTAGTTGTTTTGTCGTAATATATCTTCTCACTTCTCACACAAACCAGCCG
CCACCAACCACAGCACCAGGACGATCTTCCGATTAGCCTGAATGTCAACC
ATTGTCGAAAGTCCGCTGGGTGGAAAAAATCCCTGCTGACTGAGTTTCAG
CAGTGGTATACCAGGTACACAACATCCTCCCCACCTATTTACTGTAATTA
AGTGGGGGGTAGGTGGTGTGCTCAAAACAACCCTGAAACCGCTACCTAAA
GTGTGGGCTAGGTGCATGGTATGCTTCAAAAGGTCAATCTGATGCCTAAA
GTGAGTGTATGTCGGTGTGCTAAAATGCCAAACCTGTGCCTAAGGTTGGC
GTATGTAGTGTACTCAAGGTGAAAGGACGGCGACAGACAAGCAGTGGTAG
GAAGGCATCACGGGTGTGCTGCAATACTTGATTCTCGAAGATCGACCGCA
GTAGAGTAGGAACGGCACAGCGGATCACACGGCGATCGATGCGTCGCTTC
GGCCATCCTGCCGCCCCCGCAAGAAGAGTGTCTCCCATGTCTACCTTCCA
TGTCGACATTCCATGTCTACAGAGTGCCCATCTCTCCGGAGCCTCTATTT
TCTTGCCATGTGCTTTTTCGACAGCCTCTTCGGCCCCTCTTTCGTGGGGA
AGCCTAAATTACCATTTAGATACAGCCCATCCCCAACCGCAGTATTGTTG
TCGGTCGCGTGACGAGTGGCGGAGAGAGGGCGGCGGGATCTTAGAGCTAG
CTGAGCTCGCCAGGGAATACACACCCTGTAAGGATTTCAAGCGGTAGTCG
CTCTTCGCCCTCGTCGAGGTCATCGTCTAGATATAGAGTAGTAAGGATAT
CCGCGACCCAACTAGGTCATGCGCCACTACCCCCTTAAAGAACCTGTACC
ACGACCCGAAGCAAATTTCGTTGTGGATATATCTATGTGTGAAAATTCAT
AAGCAGTGCGAATAATACATACTGGTGTTCTTGTTGCGTTCCTTTGTTAG
CGTGCACTGAACGGTGGTGTGCGGGGGGCTTGGTGCGAACCACGCCTACA
GTGCCGCCGCCACGGCCAAGTGCTGGATATCAGAGGACTCGCCTGCCTCT
ATGTCGCATTGCGTGGTGCTGTGTACCGATCCCACGAACCGCACACGGCG
GCTGTGCGAGAGGCGAGACTTTGGCCAAACCTACGCTATGACAGACCCGA
ACATGCGAAAAAACCCAAATACTACTGTCGTTGAGATCATTTTTACCGGT
CCACGGAGGCCGCCCATGGAAGCCACAAAAGGGGCGGTGTGCTCGCGCTG
GGATGCAGACGGGCGTAGGGTTTTGCCGGCGAAAATATGGCGATCGGGTA
CACGGTGCGACGCTTAGGAACACGCAGCTGGTCAACTTTTCCTTACAGCT
GAACTTGCAGTTGAACTCTGCAACTGTGTGCAAAATACTAACACCAACAT
TGATTATCTTTTGAAGTAATTTTTCCGGCCGGGTGTGTCGACTCCTTCAG
TACGTTTCAAAATAAATTTGTTTTTTCAGATACATCCCACCTGCAGCTAT
AGTGGTAGCGCTCGGAAAAAGTACGGGTTTTCTGAATGGAGGCGTTTTCT
AACCCCTTCAGGGTCGACTGTTTGTCTATCGAGGTAGAGAGTGCACGCAA
ATGGTGGTCATCTCGGGAAGAAATTGAATTTGGCGGCCATCGACAACCAG
TGGAAAACGGAACTTTTTTGCACACACCGAACAGCGGTCTGAGAGTATAC
AATTGCTACTGAAGCTACTGAAGGGAAAGTACTTCGCTTTCCTCTTCGCC
AATCGATTTTCTCCAACGTTTTGTTTCGTCCGATACCAACCTCGAGCTTG
ACATTGCCCGTCCAACCCTCGAACGTGACGTAGCTCTTCTAATTACTACT
TGTATAATAGGGACGCACTACATTGATTCATAACCGCGGGTAGGTGTTTT
TTTCTTATGGTGGGTTGGGCGGTCGGACGTTCGAAACGTGACGCCAATTT
TGAAAGGCACATGTTACAGGCCTTGGCGGGGGGTAGTGGTCTATGATGTA
TTTCGCATCTCACGCTTCTATGTAGTGGCGGCCCCTTCGTGGTAGGCGTA
CAAAAGGGCGCGTGTAGCTCGCAGGCAGGCCTGCAGAAGTAAGTGCTATG
AGAGATGACCGTCTATTTTACTTTAGCTTCACATTCCGCAGAGAGAGAGG
CGTCGAACGTCCTGTTCCGATTCAAGCTCAAAACTTGTTTTCTGTCCTGA
AACGTATAAATACGTTCGTTCACATTTAGCCGTTCATTTTCTACACCTTT
GGTGTTGTGAAAATTAGCCACAGTGCGGTTTACACGCTTTCCTGGGATTT
TAAGGTTGTCACGACGTACCGCATGCCCTTACTCGCTAGCTGCTGACTTC
AAAGACCCCCCAAAGTCTGGGTCGCGCCAGAGCAAAGCGTTGTCGTCCTA
GAGCGGTTTGACTGATAAGGTGTGTTGACGCTCCTCCTAAAGCTAGTAGG
CCGACATCTATTGCGTGTGGTGCATGACACAAGTGTGCATCCAGGATCCG
TGAACGCGTACACACACGTCCTGTCCTACGGCATGTGCAATTGCGATGGG
CGATACTGGTGCATGCCTCGATGGTTCGACGCCTCTGTGATACAACTAGG
AAGTCACGGTTTGTATTGTCGATTTGCCAGATACAAAAGTTGGAATGCAC
TGAGTCAAGTTGAAAATGCCCCCTCTTTTACGTCGTGATACCCTTGTCTT
TCATTTGACATATGCACAGAAAACCTGGAGGTGACGGGCTGCAACATCTC
TGCTGGGAGTGTCGACTCGGTCCAGGGTGAGGCAGCCGCCAGTACCCTTG
AAAATGTTGCAGGTACGGTTCGGAATACCTACAAGTATCTGAGTTGCGTC
GCTGGTGCATTGTGTGCACTTGCGCTTGATCAACGTTTTTGGAGCCGTGT
AAGTGAGGTTCCCCGCCTTTAGTGATGTGGGCGATGCCCCGAACCTTCCT
CCAGCAGGAGGGGCTTTGGGTACGAGTATATGTTTTCGATATAACTGGTG
TGTCGCCCCGAGGAAGTCGAGGCTTGACCTACAAGTAGTAGTTTCCTTAC
CCGTCCCCACTCATGCTGATTTGTCGTCATATTATCGCTATCATGGGCGT
GGTGGTTAGCTGTTCCTACGCGGCCGTTCGAGACACGGTCCGGCTAAATC
CCGAACGAACGCTAGACGCACATAGCCCTACGAGATCCCTTTCCTTTTCT
GTTCAAACCTGCTGGCTGCGTGCTCTGGGTCTTCATTGCCTTTTTCTACC
TGAAACGATACGCACCCACAATTTGCCCAAGAAGGAAAAGCTGCCAGCCT
CAATCAACGCCGCTGTCACTTAAGCGACTCGTTCACCGGACGGCTTCTAT
CTGTCTGTACGGGATTCTTGTGCGCGTGTTTTTCGCAGATGGCGGCCGAT
TCCTGGGTGCCGTTTACGTCGTTCTCAGCGACCACGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig969:11799..15785-

>mRNA_S-dermatodea_contig969.17690.1 ID=mRNA_S-dermatodea_contig969.17690.1|Name=mRNA_S-dermatodea_contig969.17690.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig969:11799..15785- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAATCAAGACGCAAGCACGTGTGTGCCCTATCACGGAGAGCAAGCCTTC
TTCAAGTCTGGCGCAACACCGAACTGCTGTGTACCGCACAAGCAAGTCAT
CTGTCAGCATGCTGGGCGCTACAGGTAATCAAGACGCAAGCACGTGTGTG
CCCTATCACGGAGAGCAAGCCTTCTTCAAGTCTGGCGCAACACCGAACTG
CTGTGTACCGCACAAGCAAGTCATCTGTCAGCATGCTGGGCGCTACAGAA
AACCTGGAGGTGACGGGCTGCAACATCTCTGCTGGGAGTGTCGACTCGGT
CCAGGGTGAGGCAGCCGCCAGTACCCTTGAAAATGTTGCAGAAAACCTGG
AGGTGACGGGCTGCAACATCTCTGCTGGGAGTGTCGACTCGGTCCAGGGT
GAGGCAGCCGCCAGTACCCTTGAAAATGTTGCAGATGGCGGCCGATTCCT
GGGTGCCGTTTACGTCGTTCTCAGCGACCACATGGCGGCCGATTCCTGGG
TGCCGTTTACGTCGTTCTCAGCGACCAC
back to top