mRNA_S-dermatodea_contig966.17667.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig966.17667.1
Unique NamemRNA_S-dermatodea_contig966.17667.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig966.17667.1 vs. uniprot
Match: A0A6H5JPR7_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.520e-12
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:   47 VIGGM-RRLSGTKQEALRSKGLFKIAPASKVPVQQGKKEKKPLTAKQKLLAKMRR 208
            VIGG+ RRLS TKQEALRSKG+FKIAP SKVP +   KEKKPLTAKQKLLAKMRR
Sbjct:  868 VIGGVQRRLSVTKQEALRSKGMFKIAPPSKVPPKP--KEKKPLTAKQKLLAKMRR 920
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BLAST of mRNA_S-dermatodea_contig966.17667.1 vs. uniprot
Match: D7FTJ5_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.830e-12
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:   47 VIGGM-RRLSGTKQEALRSKGLFKIAPASKVPVQQGKKEKKPLTAKQKLLAKMRR 208
            VIGG+ RRLS TKQEALRSKG+FKIAP SKVP +   KEKKPLTAKQKL+AKMRR
Sbjct:  897 VIGGVQRRLSVTKQEALRSKGMFKIAPPSKVPPKP--KEKKPLTAKQKLMAKMRR 949
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig966.17667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPR7_9PHAE1.520e-1281.82JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FTJ5_ECTSI2.830e-1280.00JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig966contigS-dermatodea_contig966:19902..21634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size440
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig966.17667.1prot_S-dermatodea_contig966.17667.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig966 20041..21634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.495036-UTR-S-dermatodea_contig966:19901..200401622925423.495036-UTR-S-dermatodea_contig966:19901..20040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig966 19902..20040 -
1694079923.4451394-UTR-S-dermatodea_contig966:19901..200401694079923.4451394-UTR-S-dermatodea_contig966:19901..20040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig966 19902..20040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.510144-CDS-S-dermatodea_contig966:20040..202071622925423.510144-CDS-S-dermatodea_contig966:20040..20207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 20041..20207 -
1694079923.4547095-CDS-S-dermatodea_contig966:20040..202071694079923.4547095-CDS-S-dermatodea_contig966:20040..20207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 20041..20207 -
1622925423.5217984-CDS-S-dermatodea_contig966:21501..216341622925423.5217984-CDS-S-dermatodea_contig966:21501..21634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 21502..21634 -
1694079923.4638963-CDS-S-dermatodea_contig966:21501..216341694079923.4638963-CDS-S-dermatodea_contig966:21501..21634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 21502..21634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig966.17667.1

>prot_S-dermatodea_contig966.17667.1 ID=prot_S-dermatodea_contig966.17667.1|Name=mRNA_S-dermatodea_contig966.17667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
GRARERWWTGGRSNGSYRWNEEVVRDEAGGATKQGAFQNCPRVQGAGSAR
KKREETAYRQAEAPGKDAPLARRNQSPWRGWLHCSVFYVTCKGASGVWD*
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mRNA from alignment at S-dermatodea_contig966:19902..21634-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig966.17667.1 ID=mRNA_S-dermatodea_contig966.17667.1|Name=mRNA_S-dermatodea_contig966.17667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at S-dermatodea_contig966:19902..21634- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCGCGCGCGGGAGCGGTGGTGGACGGGGGGGCGGTCCAACGGGAGTTA
TCGGTGGAATGAGGAGGTTGTCCGGGACGAAGCAGGAGGCGCTACGAAGC
AAGGGGCTTTTCAAAATTGCCCCCGCGTCCAAGGTGGGTTTGTTTTTGTT
TTGCGTCCTGGCTTGCTGGCTTTGGGGGCGCGTTGCGCAGCCGTGCCGTG
CCGTGGTCGCGTCGTAGCGTGCGGGGGTGTTTTGTTCTCGACGGACCTTT
TCTGTGCGCGTTTTTTGTGAAATTTTTCGGGGGCGTTGGTGGCCGGTCGT
CTCAGATCTCTTGCTTTTTCGAAACGAGGGTTCGTGTCTTGGAGGAGGTG
CCGGGTTGTTGTCCGCTGATGCGCTCGACAAGAAGCTCGACGCCGGCGTC
GTTCGCTGACGCAGGGGCGCACGATATCGATTGTCGTTGTCCGTTTTGTT
TCTCTTTCTTTCTCACATACCAGTATGAAGGATCGGCCTGATTCGGATCC
CGTCTGTGGTAACGAGGGATCGTCCCATCTCTCCAAACGGCACCCGCCGT
GTTTGTTTATTTGATCGCGCATTGGGTTCAGCAATCGCACCTCTGCGTAA
ATACGCATCGCAAGTTGTCTTCAGAATCAACGGCAGCAGGCGTTTTTTGC
TCTAGACAGGGTTCGTAACGATCGCCGTGGCACCGCAGTTGGCGCCCCGC
CAGGTGTATCGTGCTCGGTCGCCACTTCCACGAGAAGACACGTACGCAGA
ATTTCCCCCCGGGCCGAAATACATGTTAACAACTCTATGAACAAGAGCAC
CACACAATGGACACGAAAAAACGTACCGATGAACGCTTTGCGTTGCCGTG
TGATGCATACCTCTACAGACGAAAGGGGCAGCGCTCAACCTGTGGATTGC
AGTCGCGCGGATGTATCGTAGCAGAGAGGAGGACTAGCCGGATGCACCCC
CCTGAAACAATTAATATATTTGTAAAACGCCGAGCGGCCATTGGGTTCCA
ACTTTTGTGTAGAGAGGAAAGGTGGACCAAGCTAGCAAACTCAATGGAGA
TCTACGTTATGTATTATGCTATGATATAGGGTCCTACTGTACTACATCTG
TATTATAGACTACGTGGAAGATGACTTCCGATTGGGTATGGTGACGTCTC
CTCCCCCCCCCCCCTCCTCTAGCTCATGTGACATGGAGCTTAACTGCTAC
GCTACGCTATAGCACTCTACTCGCCGTCTTGCGTCTTGATGGCGTGCGCC
GTTGCGAGCACCTGCCTCTCTTGCCAACACTGAACCCTGGAGGCACGGGT
ATTTTTTAGCCCCTCAACTCGCCCGCATCGTACACAGCGGGGCACTGCAA
CGCGACTAAAACGCTGATCGCGCGTGCGTCTCTTGGCGACAACCCACCTC
CTCTTCGGACTCTCTTGCCGTTGACAGGTGCCGGTTCAGCAAGGAAAAAA
AGAGAAGAAACCGCTTACCGCCAAGCAGAAGCTCCTGGCAAAGATGCGCC
GCTAGCGAGACGCAACCAATCCCCATGGCGGGGTTGGCTACATTGTAGCG
TTTTTTATGTAACGTGTAAAGGGGCGAGCGGCGTGTGGGATTAGCTCCCT
ACGGTTGGTTCTAGCCTACAAATAGACGCGTTCCTTATCGGATCCGGCGC
CTGCTTTTGCTCTGCCGAAAGCGAATCACGAGTAGGTCTTGGCTGCCTGT
GCTTTTGCGCGCTGTAGGGTGGCTGCGTTCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig966:19902..21634-

>mRNA_S-dermatodea_contig966.17667.1 ID=mRNA_S-dermatodea_contig966.17667.1|Name=mRNA_S-dermatodea_contig966.17667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig966:19902..21634- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCGCGCGCGGGAGCGGTGGTGGACGGGGGGGCGGTCCAACGGGAGTTA
TCGGTGGAATGAGGAGGTTGTCCGGGACGAAGCAGGAGGCGCTACGAAGC
AAGGGGCTTTTCAAAATTGCCCCCGCGTCCAAGGGCCGCGCGCGGGAGCG
GTGGTGGACGGGGGGGCGGTCCAACGGGAGTTATCGGTGGAATGAGGAGG
TTGTCCGGGACGAAGCAGGAGGCGCTACGAAGCAAGGGGCTTTTCAAAAT
TGCCCCCGCGTCCAAGGTGCCGGTTCAGCAAGGAAAAAAAGAGAAGAAAC
CGCTTACCGCCAAGCAGAAGCTCCTGGCAAAGATGCGCCGCTAGCGAGAC
GCAACCAATCCCCATGGCGGGGTTGGCTACATTGTAGCGTTTTTTATGTA
ACGTGTAAAGGGGCGAGCGGCGTGTGGGATTAGGTGCCGGTTCAGCAAGG
AAAAAAAGAGAAGAAACCGCTTACCGCCAAGCAGAAGCTCCTGGCAAAGA
TGCGCCGCTAGCGAGACGCAACCAATCCCCATGGCGGGGTTGGCTACATT
GTAGCGTTTTTTATGTAACGTGTAAAGGGGCGAGCGGCGTGTGGGATTAG
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