mRNA_S-dermatodea_contig9655.17665.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE) HSP 1 Score: 729 bits (1881), Expect = 1.400e-244 Identity = 469/937 (50.05%), Postives = 574/937 (61.26%), Query Frame = 1
Query: 1 QVFQVTLRDL------GAGQGGLHRINVYFYDGWADEN-ARLRPGDEVAVSGPAAILVHPDPSAG-SGDHPFCLALHTPGDEEETNNDPIVALGAVGADLLGKPGTDAGGGGGK-------VTCKIVRRAER---MARAGSAAVGGSERGGRGATGKTSYVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQAVRETYQRGPVACGASAAKGGGRXXXXXXXXXXLESDEDSPPSGPDAGGGQADSVLPATEWEVQASSPNFTLLQVDHDSRCTALNAWLVNKAPHLWLKPSSESKIWVQDIFRRPQGGPAIVATEVELVCCLVSKHERHEGGAGSLANVYVSDGTGYSDSPPGSEWDGRRDSALIKGMRFALGKPKWSPGNPRPPPFPAHLKVEVLENAKEWEALALTPGMWIRLRRLTITKNRATGNMSAKMIDKPASVNPLHPMMAEVQAVAANYAAHCARAANSSSSGNDIS-------------------SANPPARPPDNAR-----------ARQPPR------------------------------------AEASVSGP--------------------RQAGPTAPPTQGWQPLPSERDPSSASW--AP-----RQGAPNATVQPTGQGG-------------VATSSGANISVNGGVAGGSDLPGHSGAGVENEAGRPAKRARPMLGAAGTR---APSLGALTHLGVVRCTPAPSVFDSRVRIVAHFPAKVSDFVRQGPGLEED-LRFLFTLRLEDDYGVVDAVATGLDASCLLPGKPTPAQFRGSADVRGRAERSLARLESD-----GGSWLGLRLQSYVMPLTGARRSGGSGRVDFCKRFSVVAPSSLE 2412
+VFQVTLRDL GA HRI+ YFYD WAD++ + + PGD++ VSGPAA LVHPDPSA +GDHPFCL HT D D ++ALGA+ AD L AGGGGG+ V+CK+VR+A + +R G+A +G R G G K SY YT L S++V +++ NVYGVVCSF H HQS+GRD+T S++LLDES P SD AVPCNFF + LPAPLMVGDIVR+HRAK+Q+YR RPQLL GAAWL+IR+K+A+RETYQ+ P+ G S+A G XXXXXXXXXX SPPSGPDAGGG+ D++LPAT+WEVQ+SS N+TL QVD D RC AL+ WL K+P LWLK SSE K+WVQDIFRRPQ G I EV+LVCCL SKHE+ EGGAGSL+ VYV+DGTG++ S PG EWD RRD+AL+KG+R ALGKP WSPGNPRPPP PAHLKVEV EN +EWEALAL+PGMWIRLRRLTI KNRATGNMSAKMIDK +SVNPLHP M EVQ +A +YA HCA A++SS A P RPP + +RQ P + A+ SGP R++ P++P + P+S++ AP +QG P ++P G G V +S A V G G+++ GH A P R A R AP +++L VVR T AP+VFD+R RIV+H+P KV DFVR+GP + D L FLFTLRLEDDYGVVDA+A+G DAS LLPG P+P +F S +V+ R ER L RLES GG + LRL+SY+ PL R G D CKR+S++APS LE
Sbjct: 65 KVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGSD------DSLLALGAMAADHLAGV---AGGGGGRNDEADDVVSCKVVRKAVQPGARSRGGAAPMG---RRGGGGRAKASYAYTALDSIRVQEEKTNVYGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDGAVPCNFFSSTLKGLPAPLMVGDIVRLHRAKVQEYRGRPQLLAAGGAAWLVIRKKKAMRETYQKCPIG-GISSASGXXXXXXXXXXXXXXXX---SPPSGPDAGGGEVDAILPATDWEVQSSSANYTLSQVDQD-RCIALSDWLARKSPQLWLKSSSEVKVWVQDIFRRPQSGDVISKLEVDLVCCLTSKHEKAEGGAGSLSEVYVADGTGFASSMPGKEWDDRRDAALLKGVRAALGKPGWSPGNPRPPPIPAHLKVEVTENKREWEALALSPGMWIRLRRLTIVKNRATGNMSAKMIDKGSSVNPLHPSMVEVQHIAMSYATHCASASSSSXXXXXXXXXXXXXXXXXXXXXXXXXXKAPSPVRPPSRSAPAPATATAGVCSRQMPSPRGNGASSGNXXXXXXXXXXXXXXXXXXXGDPGVSASSAAASGPSSGCDNRGRATSSSRVTGCERRSLPSSPTAAXXXXXXPRKVPTSSAQQLAPLLRRQQQGPP---LRPAGVRGRCHFFDRGDASKDVLGTSNARTGVGGE---GAEVGGHVSVRGTKRA-LPVSEDRTETRAGAERRPEAPEGRRMSNLEVVRSTVAPNVFDTRARIVSHWPPKVEDFVRRGPESDNDRLHFLFTLRLEDDYGVVDAIASGPDASLLLPGSPSPTEFYTSLEVQSRVERVLTRLESTSAGKAGGGLIELRLRSYLAPLVEIRHRG-----DKCKRYSIIAPSCLE 972
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI) HSP 1 Score: 529 bits (1363), Expect = 1.110e-171 Identity = 295/478 (61.72%), Postives = 350/478 (73.22%), Query Frame = 1
Query: 1 QVFQVTLRDL------GAGQGGLHRINVYFYDGWADEN-ARLRPGDEVAVSGPAAILVHPDPSAG-SGDHPFCLALHTPGDEEETNNDPIVALGAVGADLLGKPGTDAGGGGGK-------VTCKIVRRAERM---ARAGSAAVGGSERGGRGATGKTSYVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQAVRETYQRGPVACGASAAKGGGRXXXXXXXXXXLESDEDSPPSGPDAGGGQADSVLPATEWEVQASSPNFTLLQVDHDSRCTALNAWLVNKAPHLWLKPSSESKIWVQDIFRRPQGGPAIVATEVELVCCLVSKHERHEGGAGSLANVYVSDGTGYSDSPPGSEWDGRRDSALIKGMRFALGKPKWSPGNPRPPPFPAHLKVEVLENAKEWE 1380
+VFQVTLRDL GA HRI+ YFYD WAD++ + + PGD++ VSGPAA LVHPDPSA +GDHPFCL HT D D ++ALGAV AD L AGG GG+ V+CK+VR+A + +R G+A G RGG K SY YT L S++V +++ NVYGVVCSF H HQS+GRD+T S++LLDES P SD AVPCNFF + LPAPLMVGDIVR+HRAK+Q+YR RPQLL GAAWL+IR+K+A+RETYQ+ P+ G S A G XXXXXXXXXX SPPSGPDAGGG+AD+VLPAT+WEVQ+SS N+TL QVD D RC AL+ WL K+PHLWLK SSE K+WVQDIFRRPQ G I EV+LVCCL SKHE+ EGGAGSL+ VYV+DGTG++ S PG EWD RRD+AL+KG+R ALGKP WSPGNPRPPP PAHLKVEV EN +E E
Sbjct: 80 KVFQVTLRDLSLPGNSGANGNLHHRIDAYFYDKWADDHHSGIGPGDDIEVSGPAARLVHPDPSASDNGDHPFCLVFHTGRD------DSLLALGAVAADHLAGV---AGGSGGRSDEADDVVSCKVVRKAAQPGAGSRGGAAPTG---RGGXXXRAKASYAYTTLDSIRVQEEKTNVYGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDDAVPCNFFSSTLKGLPAPLMVGDIVRLHRAKVQEYRGRPQLLAAGGAAWLVIRKKKAMRETYQKCPIG-GISPASGDXXXXXXXXXXXXXXX---SPPSGPDAGGGEADAVLPATDWEVQSSSANYTLSQVDQD-RCIALSDWLATKSPHLWLKSSSEVKVWVQDIFRRPQSGDVISKLEVDLVCCLTSKHEKAEGGAGSLSEVYVADGTGFASSMPGKEWDDRRDAALLKGVRTALGKPGWSPGNPRPPPIPAHLKVEVTENKREVE 540
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A0P1AB36_PLAHL (Predicted telomere binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB36_PLAHL) HSP 1 Score: 82.0 bits (201), Expect = 3.900e-12 Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 418 TSYVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQAVRETYQ 765
T Y Y+ L+ L D A++YGV + P ++ GRD +++L DESRP A+ N F P+ +P VGDI+R H+ KIQQ++ R Q L +H A ++ R+QA + Q
Sbjct: 205 TVYRYSCLSEL--VDGYADIYGVAVNMTLPKKTSGRDFCMTVSLTDESRPTRAEAIHINIFYPTIAAMPKIKYVGDIIRFHKVKIQQFQNRIQGLSLHRATRFLVLREQATGDLEQ 318
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A0W8BHD3_PHYNI (Protection of telomeres protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BHD3_PHYNI) HSP 1 Score: 79.0 bits (193), Expect = 2.180e-11 Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 418 TSYVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQA 747
++Y Y+ L+ L D A++YGVV + P ++ GRD ++++ DES P +A+ N F P+ +K+P VGDI+R H+ KIQQY++R Q L + A ++ R++A
Sbjct: 62 SAYRYSPLSEL--VDGFADIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQGLSLSRATRHLVLREKA 169
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: W2Q538_PHYPN (Telo_bind domain-containing protein n=65 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q538_PHYPN) HSP 1 Score: 78.6 bits (192), Expect = 4.690e-11 Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 424 YVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQA 747
Y Y+ L+ L D A++YGVV + P ++ GRD ++++ DES P +A+ N F P+ +K+P VGDI+R H+ KIQQY++R Q L + A ++ R++A
Sbjct: 211 YRYSPLSEL--VDGFADIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQGLSLSRATRHLVLREKA 316
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A6A3ZSE3_9STRA (Telo_bind domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZSE3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.430e-10 Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 424 YVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIRRKQA 747
Y Y++LA L D A++YGVV + P ++ GRD ++++ DES P A+ N F P+ ++P VGDI+R H+ KIQQY+++ Q L + + ++ R+QA
Sbjct: 195 YRYSSLAEL--VDGNADIYGVVVNVTLPKKTSGRDFCMTVSVTDESCPTRAEAIQINIFYPTVAQMPKIKYVGDIIRFHKIKIQQYQDKIQGLSLPRGSRHLVLREQA 300
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A329T5R6_9STRA (Telo_bind domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T5R6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 8.490e-10 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 424 YVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAA 720
Y Y+ L+ L D A++YGV+ + P ++ GRD ++++ DES P +A+ N F PS K+P VGDI+R H+ KIQQY++R Q L A
Sbjct: 129 YRYSPLSEL--VDGYADIYGVIINVTLPKKTSGRDFCMTVSVTDESCPTRAAAIQINIFYPSIAKMPKIKYVGDIIRFHKVKIQQYQDRIQGLSFRHRA 225
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A024FXU0_9STRA (Telo_bind domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FXU0_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.970e-9 Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 424 YVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHGAAWLIIR 735
YVYTNL+ L + ANV+GVV + P +S G+D+ + + DES P A+ F + +++P L VGD++R HR KIQQY R Q + H +L+ R
Sbjct: 884 YVYTNLSDL--SSGLANVFGVVVNMVLPRKSAGKDIHMHVHITDESCPKRQDALLVLVFYRTLEQMPRVLYVGDVIRFHRLKIQQYDGRLQGVCYHATRFLVSR 985
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: UPI001BB1852E (protection of telomeres protein 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1852E) HSP 1 Score: 72.0 bits (175), Expect = 5.880e-9 Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 424 YVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQY 681
Y YT L ++ +VYGVV F P+++KG D SL ++D S P+ DS + C FQ KLP L GDIVR+HR +IQ+Y
Sbjct: 202 YKYTCLNDIKETGS-VDVYGVVKFFKPPYKTKGPDYCMSLTIVDPSLPEEDSGLKCVLFQQDIKKLPEVLSKGDIVRLHRLRIQKY 286
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Match: A0A7M7MZ44_STRPU (Protection of telomeres protein 1 n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7MZ44_STRPU) HSP 1 Score: 69.7 bits (169), Expect = 2.980e-8 Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 415 KTSYVYTNLASLQVADQRANVYGVVCSFNHPHQSKGRDMTTSLALLDESRPDSDSAVPCNFFQPSRDKLPAPLMVGDIVRIHRAKIQQYRERPQLLGIHG 714
K +Y Y L ++ A + +VYGVV F P+++KG D SL ++D S P + + C F KLP +GDIVR+HR KIQQY QL G G
Sbjct: 191 KRTYEYKCLNDVKEA-RSVDVYGVVKFFKPPYKTKGPDYCMSLTIVDPSLPQDNFGLKCVIFHQDIKKLPQVHSIGDIVRLHRLKIQQYNN--QLQGAKG 287 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9655.17665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9655.17665.1 >prot_S-dermatodea_contig9655.17665.1 ID=prot_S-dermatodea_contig9655.17665.1|Name=mRNA_S-dermatodea_contig9655.17665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=693bp MARAGSAAVGGSERGGRGATGKTSYVYTNLASLQVADQRANVYGVVCSFNback to top mRNA from alignment at S-dermatodea_contig9655:1601..7107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9655.17665.1 ID=mRNA_S-dermatodea_contig9655.17665.1|Name=mRNA_S-dermatodea_contig9655.17665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5507bp|location=Sequence derived from alignment at S-dermatodea_contig9655:1601..7107- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9655:1601..7107- >mRNA_S-dermatodea_contig9655.17665.1 ID=mRNA_S-dermatodea_contig9655.17665.1|Name=mRNA_S-dermatodea_contig9655.17665.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4158bp|location=Sequence derived from alignment at S-dermatodea_contig9655:1601..7107- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |