mRNA_S-dermatodea_contig96535.17663.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig96535.17663.1
Unique NamemRNA_S-dermatodea_contig96535.17663.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A8F0JWX3_9PHAE (Ribosomal protein S2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JWX3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.660e-59
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLL+AGVH GHKA RWNPKMFPYIY ERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAA LIA EAQRCGAFY+NHRWL
Sbjct:    1 MAKIELAQLLDAGVHLGHKAHRWNPKMFPYIYTERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAASLIANEAQRCGAFYVNHRWL 97
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BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: D1GJH5_FUCVE (30S ribosomal protein S2, chloroplastic n=41 Tax=Phaeophyceae TaxID=2870 RepID=D1GJH5_FUCVE)

HSP 1 Score: 190 bits (482), Expect = 2.500e-59
Identity = 89/97 (91.75%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNG+HILDLIQTTEFLKRACDFSKKA+ KNQTFLFVGTKK+A+ LIA EAQ+CGAFYINHRWL
Sbjct:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKASAKNQTFLFVGTKKRASSLIASEAQKCGAFYINHRWL 97
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BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A141BSD4_9PHAE (30S ribosomal protein S2, chloroplastic n=12 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD4_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.440e-58
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNG+HILDLIQTTEFLKRACDFSKKA+ KNQTFLFVGTK+  A L+A EAQ+CGAFYINHRWL
Sbjct:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKASSKNQTFLFVGTKRHTASLVASEAQKCGAFYINHRWL 97
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BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A8F0K065_9PHAE (Ribosomal protein S2 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K065_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 4.360e-58
Identity = 88/97 (90.72%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLL+AGVHFGHKA RWNPKMFPYIYAERNG+HILDLIQTTEFLKRACDFSKKAA+KNQTFLFVGTKKQ A LIA EA  CGAFYINHRWL
Sbjct:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWL 97
[Close]
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A1I9LVT4_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.920e-56
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLL+AGVHFGHKA RWNPKMFPYIYAERNG+HILDLIQT EFLKRACDFSK+A++K QTFLFVGTKKQ+A LIA EAQ+CGAFYINHRWL
Sbjct:    1 MAKIELAQLLDAGVHFGHKAHRWNPKMFPYIYAERNGIHILDLIQTMEFLKRACDFSKRASEKKQTFLFVGTKKQSASLIAIEAQKCGAFYINHRWL 97
[Close]
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A8E5XRD1_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD1_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.890e-51
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKIELAQLLEAGVHFGHKA+RWNPKMFP+IYAERNG+HILDLIQT + LK ACDFS K A+ N+TFLF+GTK+QAA +IA  +QRCGAFY+NHRWL
Sbjct:    1 MAKIELAQLLEAGVHFGHKAKRWNPKMFPHIYAERNGIHILDLIQTAQLLKVACDFSTKIAKNNKTFLFIGTKRQAAAVIAHASQRCGAFYVNHRWL 97
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BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A7S6U9Z1_9STRA (30S ribosomal protein S2, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.290e-50
Identity = 78/97 (80.41%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MAKI+LAQLL+AGVHFGHKA RWNPKMFPYIY ERNGVHILDLIQT E LKRACDF + AA++N+TFLFVGTKKQA+ +IA EA RCGA Y+NHRWL
Sbjct:    1 MAKIKLAQLLKAGVHFGHKAYRWNPKMFPYIYTERNGVHILDLIQTAELLKRACDFCEIAAKQNKTFLFVGTKKQASSIIASEATRCGANYVNHRWL 97
[Close]
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A7T8JK39_9CRYP (30S ribosomal protein S2, chloroplastic n=1 Tax=Cryptophyta sp. CCMP2293 TaxID=697907 RepID=A0A7T8JK39_9CRYP)

HSP 1 Score: 157 bits (398), Expect = 1.860e-46
Identity = 67/97 (69.07%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            MA + LA+LLEAGVHFGH+A+RWNPKMFPYIYAERNG+HI+DL+QT + L +AC+F+K AA++ +TFLFVGTK+QAA ++A+EA+RCGA+Y+N RWL
Sbjct:    1 MAVVSLAELLEAGVHFGHQARRWNPKMFPYIYAERNGIHIIDLVQTAQLLTQACNFTKAAAEEGKTFLFVGTKRQAAGIVAQEAERCGAYYVNQRWL 97
[Close]
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: RR2_GUITH (30S ribosomal protein S2, chloroplastic n=2 Tax=Guillardia theta TaxID=55529 RepID=RR2_GUITH)

HSP 1 Score: 154 bits (388), Expect = 4.970e-45
Identity = 67/94 (71.28%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:   10 IELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            I LA+LLE+GVHFGH+A+RWNPKMFPYIYAERNG+HI+DL+QT + L  AC+F KK+A++ + FLFVGTK+QAA +IA+EA+RCGAFYIN RWL
Sbjct:    3 ITLAELLESGVHFGHQARRWNPKMFPYIYAERNGIHIIDLVQTAQLLTEACEFVKKSAEEGKKFLFVGTKRQAASIIAQEAERCGAFYINQRWL 96
[Close]
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Match: A0A2I4Q2U3_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2U3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.290e-45
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL 291
            M KIELA LL+AGVH GHKA RWNPKMFPYIY ERN VHI+DLIQT +FL+ AC FS+ AA+ N+TFLF+GT K  A LI  E++RCGAFYINHRWL
Sbjct:    1 MKKIELAHLLDAGVHLGHKANRWNPKMFPYIYTERNQVHIIDLIQTIKFLRLACTFSENAARNNETFLFIGTNKYTAPLITAESERCGAFYINHRWL 97
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig96535.17663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JWX3_9PHAE1.660e-5992.78Ribosomal protein S2 n=1 Tax=Protohalopteris sp. T... [more]
D1GJH5_FUCVE2.500e-5991.7530S ribosomal protein S2, chloroplastic n=41 Tax=P... [more]
A0A141BSD4_9PHAE1.440e-5889.6930S ribosomal protein S2, chloroplastic n=12 Tax=S... [more]
A0A8F0K065_9PHAE4.360e-5890.72Ribosomal protein S2 n=1 Tax=Desmarestia aculeata ... [more]
A0A1I9LVT4_9PHAE1.920e-5687.6330S ribosomal protein S2, chloroplastic n=1 Tax=Pl... [more]
A0A8E5XRD1_9PHAE3.890e-5179.3830S ribosomal protein S2, chloroplastic n=1 Tax=Is... [more]
A0A7S6U9Z1_9STRA2.290e-5080.4130S ribosomal protein S2, chloroplastic n=1 Tax=Sc... [more]
A0A7T8JK39_9CRYP1.860e-4669.0730S ribosomal protein S2, chloroplastic n=1 Tax=Cr... [more]
RR2_GUITH4.970e-4571.2830S ribosomal protein S2, chloroplastic n=2 Tax=Gu... [more]
A0A2I4Q2U3_9PHAE6.290e-4572.1630S ribosomal protein S2, chloroplastic n=1 Tax=Di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig96535contigS-dermatodea_contig96535:3..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D1J790
Preferred namerps2
KEGG rclassRC02795
KEGG koko:K02108,ko:K02967,ko:K03046
KEGG TC3.A.2.1
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00190,ko00195,ko00230,ko00240,ko01100,ko03010,ko03020,map00190,map00195,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00157,M00178,M00179,M00183
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0031974,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0832@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko00194,ko01000,ko03011,ko03021,ko03110,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.231653-CDS-S-dermatodea_contig96535:2..2931622925423.231653-CDS-S-dermatodea_contig96535:2..293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96535 3..293 -
1694079923.2810233-CDS-S-dermatodea_contig96535:2..2931694079923.2810233-CDS-S-dermatodea_contig96535:2..293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96535 3..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig96535.17663.1prot_S-dermatodea_contig96535.17663.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig96535 3..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig96535.17663.1

>prot_S-dermatodea_contig96535.17663.1 ID=prot_S-dermatodea_contig96535.17663.1|Name=mRNA_S-dermatodea_contig96535.17663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGVHILDLIQTTEFL
KRACDFSKKAAQKNQTFLFVGTKKQAAFLIAKEAQRCGAFYINHRWL
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mRNA from alignment at S-dermatodea_contig96535:3..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig96535.17663.1 ID=mRNA_S-dermatodea_contig96535.17663.1|Name=mRNA_S-dermatodea_contig96535.17663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at S-dermatodea_contig96535:3..293- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTAAAATCGAATTGGCTCAACTTTTAGAAGCTGGTGTCCATTTTGG
ACATAAAGCCCAGCGTTGGAATCCAAAAATGTTCCCTTATATTTATGCTG
AACGAAATGGCGTTCATATCTTAGATTTAATACAAACAACAGAATTTTTG
AAACGAGCTTGTGATTTTAGTAAAAAAGCAGCACAAAAAAATCAAACTTT
TTTATTTGTTGGGACAAAAAAGCAAGCTGCTTTTTTAATCGCAAAGGAGG
CACAAAGATGTGGAGCATTTTATATAAATCATCGTTGGTTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig96535:3..293-

>mRNA_S-dermatodea_contig96535.17663.1 ID=mRNA_S-dermatodea_contig96535.17663.1|Name=mRNA_S-dermatodea_contig96535.17663.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig96535:3..293- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTAAAATCGAATTGGCTCAACTTTTAGAAGCTGGTGTCCATTTTGG
ACATAAAGCCCAGCGTTGGAATCCAAAAATGTTCCCTTATATTTATGCTG
AACGAAATGGCGTTCATATCTTAGATTTAATACAAACAACAGAATTTTTG
AAACGAGCTTGTGATTTTAGTAAAAAAGCAGCACAAAAAAATCAAACTTT
TTTATTTGTTGGGACAAAAAAGCAAGCTGCTTTTTTAATCGCAAAGGAGG
CACAAAGATGTGGAGCATTTTATATAAATCATCGTTGGTTAATGGCTAAA
ATCGAATTGGCTCAACTTTTAGAAGCTGGTGTCCATTTTGGACATAAAGC
CCAGCGTTGGAATCCAAAAATGTTCCCTTATATTTATGCTGAACGAAATG
GCGTTCATATCTTAGATTTAATACAAACAACAGAATTTTTGAAACGAGCT
TGTGATTTTAGTAAAAAAGCAGCACAAAAAAATCAAACTTTTTTATTTGT
TGGGACAAAAAAGCAAGCTGCTTTTTTAATCGCAAAGGAGGCACAAAGAT
GTGGAGCATTTTATATAAATCATCGTTGGTTA
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