mRNA_S-dermatodea_contig9638.17651.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9638.17651.1
Unique NamemRNA_S-dermatodea_contig9638.17651.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: A0A6H5JWA5_9PHAE (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA5_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 5.430e-125
Identity = 193/278 (69.42%), Postives = 230/278 (82.73%), Query Frame = 2 
Query:  464 RPPRPPGSIRKGRIEKRKAGWAAKKALAKEKRREERERREEAMRQAGVEIPEPGKNYQDLPREQWSVSQRIRNAKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRAGWTGGDDRGPSS 1297
            RPPR   SIR+GR EKRKAGWAAKK   KEK+RE      EAMR+ G EIP  GKNY++LP+EQWSVSQRIRNAKR EFE L KEGGYRVC+DMAF+D+M EKA+ASLVQQ+LY YG+NRKA QP  +TLSG+GP++T  + +LQGFDTW+G+ + +RCYTE+FDK+EL+YL+ADSP TIT L+K KVY++GGLVDRNA KG+C++KA  Q I T +LPLKK+DL G HSKVLATNHVFDIL RAMG GG+L+ +E   LPPRKRA WTGGDDRGPSS
Sbjct:   93 RPPRTQ-SIRQGRKEKRKAGWAAKKTRIKEKKREXXXXXXEAMRKEGQEIPVAGKNYKELPQEQWSVSQRIRNAKRMEFETLSKEGGYRVCIDMAFDDLMLEKAQASLVQQVLYAYGTNRKAAQPCRVTLSGMGPVMTAKVNKLQGFDTWLGMTSDARCYTEIFDKEELIYLSADSPATITHLEKGKVYIVGGLVDRNAHKGLCYEKAKKQEIVTGRLPLKKKDLYGAHSKVLATNHVFDILVRAMGNGGNLETVEKKALPPRKRANWTGGDDRGPSS 369
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: D8LL56_ECTSI (Similar to RNA (Guanine-9-) methyltransferase domain containing 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL56_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.760e-98
Identity = 145/201 (72.14%), Postives = 172/201 (85.57%), Query Frame = 2 
Query:  695 EFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRAGWTGGDDRGPSS 1297
            EFE L KEGGYRVC+DMAF+D+M EKA+ASLVQQ+LY YG+NRKA QP  +TLSG+GP++T  + +LQGFDTW+G+ T SRCYTE+FDK+EL+YL+ADSP TIT L+K KVY++GGLVDRNA KG+C++KA  Q I T +LPLKKEDL G HSKVLATNHVFDIL RAMG GGDL+K+E   LPPRKRA WTGGDDRGPSS
Sbjct:    2 EFETLSKEGGYRVCIDMAFDDLMLEKAQASLVQQVLYAYGTNRKAAQPCRVTLSGMGPIMTAKVNKLQGFDTWLGMTTDSRCYTEIFDKEELIYLSADSPATITHLEKGKVYIVGGLVDRNAHKGLCYEKAKKQEIVTGRLPLKKEDLYGAHSKVLATNHVFDILVRAMGNGGDLEKVEKKALPPRKRANWTGGDDRGPSS 202
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: A0A2D4BSW4_PYTIN (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSW4_PYTIN)

HSP 1 Score: 172 bits (435), Expect = 5.780e-46
Identity = 88/191 (46.07%), Postives = 125/191 (65.45%), Query Frame = 2 
Query:  683 AKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRK 1255
            AKRE F  +  E G ++ +D  FE++M EK + SL QQI++ YG NR++P P   T++ +       + ++ GF+ W+     S+ Y ++F K+ LVYLTADSPNTIT+LD+ KVY++GG+VDRN  KG  + KA +QGIATAKLPL K    G+ ++VL  NHVF+IL R  G+  D +    T+LP RK
Sbjct:   96 AKREAF-MMATEEGLQIVIDCGFEELMVEKEKKSLSQQIMFSYGVNRRSPAPVRATITSLSGDTRDNLTKISGFNEWLAFKATSKGYMDVFKKESLVYLTADSPNTITELDRDKVYIIGGIVDRNRLKGATYKKAVEQGIATAKLPLDKFLEMGSSTRVLTVNHVFEILVR-FGESSDWKHATMTVLPSRK 284
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: A0A8K1CUE3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUE3_PYTOL)

HSP 1 Score: 162 bits (409), Expect = 1.530e-42
Identity = 85/191 (44.50%), Postives = 120/191 (62.83%), Query Frame = 2 
Query:  683 AKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRK 1255
            AKRE +  +  E G ++ +D  FE+ M EK + SL QQI++ YG NR++  P   T++ +       + ++ GF+ W+   +    Y ELF K+ LVYLTADSPNTIT+LDK KVY++GG+VDRN  KG  ++KA +QGIATAKLPL +    G  ++VL  NHVF+IL R   +  D +    + LP RK
Sbjct:   68 AKRESY-LMASEEGLQIVIDCGFEEAMSEKEKKSLSQQIMFSYGVNRRSAAPLRATITSLRGDTKDNLTKISGFNEWLAFKSTELSYMELFRKEALVYLTADSPNTITELDKDKVYIIGGIVDRNRLKGATYNKALEQGIATAKLPLDQHVDMGASTRVLTVNHVFEILVR-YSETKDWKGAAMSTLPSRK 256
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BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: A0A2P4Y172_9STRA (SAM-dependent MTase TRM10-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y172_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.760e-42
Identity = 100/256 (39.06%), Postives = 153/256 (59.77%), Query Frame = 2 
Query:  500 RIEKRKAGWAAKKALAKEKRREERERREEAMRQAGVEIPEPGKNYQDLPREQWSVSQRIRNA--KREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            R EKR+  W  +K   K KR+E+     + +++A   IP P    ++L   + +V +R   A  KRE +  +  E G +V +D AFED M EK + SL QQI++ YG NR++  P    ++ +   + + ++++ GF  W      S+ Y +LF +D LVYLTADSPNTI++L + KVY++GG+VDRN  KG+ ++KA ++GI TAKLPL      G+ ++VL  NHVF+ILA+   +  D  +   + LP RK A
Sbjct:    2 RKEKRRMQWEERKVEKKLKRQEQ-----QRVKKANGLIPPP----KELDMSEEAVLRRKERAIAKREAY-LMAAEEGVKVVIDCAFEDKMTEKEKKSLSQQIMFSYGVNRRSRTPMNAYITSLHGDIRQNLEKISGFHEWQAFTGSSKSYMDLFKRDSLVYLTADSPNTISKLSRDKVYIIGGIVDRNRLKGITYEKAVEEGIETAKLPLDAVVEMGSATRVLTVNHVFEILAQ-FSEVKDWAQATLSTLPSRKGA 246
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: K3WPP4_GLOUD (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPP4_GLOUD)

HSP 1 Score: 160 bits (406), Expect = 1.270e-41
Identity = 85/193 (44.04%), Postives = 120/193 (62.18%), Query Frame = 2 
Query:  683 AKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            AKRE F  +  E G +V +D  FED M  +A+ SL QQI+Y YG NR++  P+   ++ +       + ++ GF  W+   +  RCY +LF K+ LVYLTADSPNTIT+L + KVY++GG+VDRN  KG+ + KA +QGI TAKLPL +    G  ++VL  NHVF+IL +   +  D  +   + LP RK A
Sbjct:  110 AKRETF-LMAAEEGIKVVIDCGFEDEMESRAKKSLSQQIMYSYGVNRRSDSPATTYITSLTGETKDNLVKIGGFPEWMAFKSTPRCYIDLFKKESLVYLTADSPNTITKLSRDKVYIIGGIVDRNRLKGITYKKAQEQGIETAKLPLDQVVEMGGATRVLTVNHVFEILVQ-FAEKNDWAQAALSTLPSRKNA 300
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BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: H3GVK9_PHYRM (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVK9_PHYRM)

HSP 1 Score: 158 bits (399), Expect = 5.840e-41
Identity = 105/259 (40.54%), Postives = 147/259 (56.76%), Query Frame = 2 
Query:  485 SIRKGRIEKRKAGWAAKKALAKEKRREERERREEAMRQAGVEIPEPGKNYQDLPREQWSVSQRIRNAKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            S R  R EKR+  W  +KA  K KR+E+    + A + +G  IP P     D+  E     +    AKRE F  +  E G +V +D  FE+ M EK + SL QQI++ YG NR++  P           + K ++++ GF  W      ++ Y ELF K+ LVYLTADSPNTIT+L + KVY++GG+VDRN  KG+ ++KA +QGI TAKLPL      G+ ++VL  NHVF+ILA+   +  D  +     LP RK A
Sbjct:   32 SKRAMRKEKRRMQWEDRKAEKKLKRQEQ----QRAKKASGT-IPPP--KEVDMSEEAVLRRKERTIAKRETF-LMAAEEGVKVVIDCEFEEKMTEKEKKSLSQQIMFSYGVNRRSRTP-----------MKKNLEKISGFHEWQAFSGSTKSYMELFKKESLVYLTADSPNTITKLSRDKVYIIGGIVDRNRLKGITYEKAVEQGIETAKLPLDTVVEMGSATRVLTVNHVFEILAQ-FSEVKDWAQATLATLPSRKGA 270
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: V9EWT5_PHYPR (SAM-dependent MTase TRM10-type domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=V9EWT5_PHYPR)

HSP 1 Score: 158 bits (399), Expect = 8.030e-41
Identity = 103/260 (39.62%), Postives = 151/260 (58.08%), Query Frame = 2 
Query:  485 SIRKGRIEKRKAGWAAKKALAKEKRREERERREEAMRQAGVEIPEPGKNYQDLPREQWSVSQRIRNA-KREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            S R  R EKR+      KA+ K KR+E+     + +++A   IP P    ++L   + +V +R   A  R E   +  E G +V +D  FE+ M EK + SL QQI++ YG NRK+  P    ++ +   + K ++++ GF  W      S  Y +LF K+ LVYLTADSPNTIT+L + KVY++GG+VDRN  KG+ ++KA +QGI TAKLPL      G+ ++VL  NHVF+ILA+   +  D  +   + LP RK A
Sbjct:   32 SKRAMRKEKRRLQSEEXKAVKKLKRKEQ-----QRVKKANGLIPPP----KELDMSEEAVQRRKDRAIARREAYLMAAEEGVKVVIDCEFEEEMNEKEKKSLSQQIMFSYGVNRKSRTPMNAYITSLHGDIRKNLEKISGFHEWQAFTGTSNSYMDLFKKESLVYLTADSPNTITKLSRDKVYIIGGIVDRNRLKGITYEKAVEQGIETAKLPLDTVVEMGSATRVLTVNHVFEILAQ-FSEIKDWAQATLSTLPSRKGA 281
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: G4YHA4_PHYSP (SAM-dependent MTase TRM10-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YHA4_PHYSP)

HSP 1 Score: 157 bits (398), Expect = 1.450e-40
Identity = 92/226 (40.71%), Postives = 136/226 (60.18%), Query Frame = 2 
Query:  590 MRQAGVEIPEPGKNYQDLPREQWSVSQRIRNA--KREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            +++A  EIP P    ++L   + +V +R   A  KRE F  +  E G +V +D  FE+ M EK + SL QQI++ YG NR++  P    ++ +   + K ++++ GF  W       + Y +LF K+ LVYLTADSPNTIT+L + KVY++GG+VDRN  KG+ + KA +QGI TAKLPL      G+ ++VL  NHVF+ILA+   +  D  +   + LP RK A
Sbjct:   73 LKKASGEIPPP----KELDMSEEAVLRRKERALAKREAF-LMAAEEGVKVVIDCEFEEEMTEKEKKSLSQQIMFSYGVNRRSRTPMSAYITSLHGDIQKNLEKISGFHEWQAFTGSQKSYIDLFKKESLVYLTADSPNTITKLSRDKVYIIGGIVDRNRLKGITYQKAVEQGIETAKLPLDTVVEMGSATRVLTVNHVFEILAQ-FSEVKDWAQATLSTLPSRKGA 292
[Close]
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Match: A0A067BJ29_SAPPC (SAM-dependent MTase TRM10-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJ29_SAPPC)

HSP 1 Score: 155 bits (392), Expect = 6.550e-40
Identity = 95/255 (37.25%), Postives = 146/255 (57.25%), Query Frame = 2 
Query:  527 AAKKALAKEKR-------REERERREEAMRQAGVEIPEPGKNYQD---LPREQWSVSQRIRNAKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILYLYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELFDKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIATAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRKRA 1261
            + K+AL ++KR       +E +++++E  R A  ++PEP  +  +   L R++ ++      AKRE F     EG   + +D  FE+ M  K + SL QQI++ YG N+++  P+ + ++ V       + ++ GF+ W+   T  +CY ++F K+ LVYLTADSPN I +L   KVY++GG+VDRN  KG+ ++KA  QGIATAKLPL K    G  ++VL  NHVF IL        D  +   + LP RK A
Sbjct:   27 SGKRALRRQKRQEIWVSVKERKKQKKEEARAARPKVPEPALDMSEAAVLMRKERAI------AKRESFLMAASEGP-TIVIDCGFEEAMSSKEKKSLTQQIMFSYGINKRSETPANVHVTSVRGEAEANLTKIGGFNDWLAFSTTPKCYMDVFRKESLVYLTADSPNVIDELQSDKVYIIGGIVDRNRLKGVTYEKAVAQGIATAKLPLDKVLEMGQATRVLTVNHVFQILVNYR-TAQDWTQATLSALPARKGA 273
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9638.17651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWA5_9PHAE5.430e-12569.42SAM-dependent MTase TRM10-type domain-containing p... [more]
D8LL56_ECTSI1.760e-9872.14Similar to RNA (Guanine-9-) methyltransferase doma... [more]
A0A2D4BSW4_PYTIN5.780e-4646.07SAM-dependent MTase TRM10-type domain-containing p... [more]
A0A8K1CUE3_PYTOL1.530e-4244.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4Y172_9STRA5.760e-4239.06SAM-dependent MTase TRM10-type domain-containing p... [more]
K3WPP4_GLOUD1.270e-4144.04SAM-dependent MTase TRM10-type domain-containing p... [more]
H3GVK9_PHYRM5.840e-4140.54SAM-dependent MTase TRM10-type domain-containing p... [more]
V9EWT5_PHYPR8.030e-4139.62SAM-dependent MTase TRM10-type domain-containing p... [more]
G4YHA4_PHYSP1.450e-4040.71SAM-dependent MTase TRM10-type domain-containing p... [more]
A0A067BJ29_SAPPC6.550e-4037.25SAM-dependent MTase TRM10-type domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9638contigS-dermatodea_contig9638:1267..7150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue2.3e-81
Seed eggNOG ortholog2880.D8LL56
KEGG koko:K15445
EggNOG free text desc.tRNA (guanine(9)-N(1))-methyltransferase activity
EggNOG OGsKOG2967@1,KOG2967@2759
EC2.1.1.221
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA methyltransferase TRMD/TRM10-type domain
Ec32 orthologEc-25_000090.1
Exons6
Model size1566
Cds size1359
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925422.1297987-UTR-S-dermatodea_contig9638:1266..14711622925422.1297987-UTR-S-dermatodea_contig9638:1266..1471Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9638 1267..1471 +
1694079922.421326-UTR-S-dermatodea_contig9638:1266..14711694079922.421326-UTR-S-dermatodea_contig9638:1266..1471Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9638 1267..1471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925422.1436093-CDS-S-dermatodea_contig9638:1471..18451622925422.1436093-CDS-S-dermatodea_contig9638:1471..1845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 1472..1845 +
1694079922.435022-CDS-S-dermatodea_contig9638:1471..18451694079922.435022-CDS-S-dermatodea_contig9638:1471..1845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 1472..1845 +
1622925422.1541564-CDS-S-dermatodea_contig9638:2746..29631622925422.1541564-CDS-S-dermatodea_contig9638:2746..2963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 2747..2963 +
1694079922.4502673-CDS-S-dermatodea_contig9638:2746..29631694079922.4502673-CDS-S-dermatodea_contig9638:2746..2963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 2747..2963 +
1622925422.164485-CDS-S-dermatodea_contig9638:4131..42971622925422.164485-CDS-S-dermatodea_contig9638:4131..4297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 4132..4297 +
1694079922.4669442-CDS-S-dermatodea_contig9638:4131..42971694079922.4669442-CDS-S-dermatodea_contig9638:4131..4297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 4132..4297 +
1622925422.1771388-CDS-S-dermatodea_contig9638:4794..49221622925422.1771388-CDS-S-dermatodea_contig9638:4794..4922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 4795..4922 +
1694079922.4778988-CDS-S-dermatodea_contig9638:4794..49221694079922.4778988-CDS-S-dermatodea_contig9638:4794..4922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 4795..4922 +
1622925422.1930254-CDS-S-dermatodea_contig9638:6053..61191622925422.1930254-CDS-S-dermatodea_contig9638:6053..6119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 6054..6119 +
1694079922.4867325-CDS-S-dermatodea_contig9638:6053..61191694079922.4867325-CDS-S-dermatodea_contig9638:6053..6119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 6054..6119 +
1622925422.2050688-CDS-S-dermatodea_contig9638:6742..71501622925422.2050688-CDS-S-dermatodea_contig9638:6742..7150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 6743..7150 +
1694079922.4958172-CDS-S-dermatodea_contig9638:6742..71501694079922.4958172-CDS-S-dermatodea_contig9638:6742..7150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9638 6743..7150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9638.17651.1prot_S-dermatodea_contig9638.17651.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9638 1472..7150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9638.17651.1

>prot_S-dermatodea_contig9638.17651.1 ID=prot_S-dermatodea_contig9638.17651.1|Name=mRNA_S-dermatodea_contig9638.17651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=453bp
MDTANPAAAAGALPTDGDNSSVPEDVGGTPTDTVTPVAKVGGGDGDEEGC
DQNNQDGGGKGNGGGNGDGDGNGDGDGGEDGEGRARRPPRPPGSIRKGRI
EKRKAGWAAKKALAKEKRREERERREEAMRQAGVEIPEPGKNYQDLPREQ
WSVSQRIRNAKREEFEALIKEGGYRVCVDMAFEDVMGEKARASLVQQILY
LYGSNRKAPQPSFLTLSGVGPLLTKGIKRLQGFDTWVGVDTQSRCYTELF
DKDELVYLTADSPNTITQLDKKKVYVLGGLVDRNACKGMCFDKATDQGIA
TAKLPLKKEDLRGTHSKVLATNHVFDILARAMGQGGDLQKIEDTMLPPRK
RAGWTGGDDRGPSSKSSSAQEKPAGNGIEPSVEGGDDNAGVSVGGGEASG
LEGGGRCDSGSGIDSGPAAVGGSEEAVGNAQTDGCAVGVQSGGGEGEENC
QDG
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mRNA from alignment at S-dermatodea_contig9638:1267..7150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9638.17651.1 ID=mRNA_S-dermatodea_contig9638.17651.1|Name=mRNA_S-dermatodea_contig9638.17651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5884bp|location=Sequence derived from alignment at S-dermatodea_contig9638:1267..7150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACTGCTGTCACTCCATCTCCTGAACCCCCACATGCGAGAGAACCACAG
CCTGGATGCTTCTTAGTGAGGACATACACTAGCGTCAACGGGAGCTATCG
GCTCTCTCGCAGGCACACAAGTATCTCGCTCAATATTTGATATAGTTTAT
AGTGCCAGCTACAGCGGTATAATAAAGCTCCTGGTACAGACGTACTATCC
ACATTATGGACACGGCCAACCCAGCAGCGGCGGCAGGTGCTCTGCCTACC
GATGGGGACAACAGCAGCGTCCCCGAAGACGTCGGTGGAACCCCAACAGA
CACGGTCACACCAGTGGCCAAAGTCGGTGGCGGGGATGGGGATGAGGAGG
GCTGCGACCAAAATAATCAGGATGGGGGCGGCAAAGGCAACGGTGGTGGC
AATGGCGACGGAGATGGCAATGGCGATGGAGATGGTGGCGAGGACGGCGA
GGGGCGTGCGAGACGCCCCCCCAGACCACCGGGTTCTATCAGGAAGGGTC
GGATAGAAAAGCGAAAGGCCGGCTGGGCGGCGAAAAAGGCGCTTGCGAAA
GAGAAAAGGAGGGAGGAGCGAGAACGCAGGTGACACATATTTTCAAATGG
TTTCGTCTATCATACTTGTACGTATTTGAGGAAATTAATTGTCTGTTCAG
AGTCTCAGTGTGGACAGCGAGTGAGCGGAACAACAGACGGGAGGAGTGAA
GAGTCGATTGGGCGGCAATGAACTCCTCGAGATGGGGTGCGTGTTCCACT
CAACGCCGCCATTGCAAACCCTGTGAAGGAGAGCATCGCGCTGCCAACTC
GAACCGTCAGACATACTTTCAGCATTGCGTGTACACTAAGGCCGATGCTG
TCATGGTCTTCGAAGTTGGGTTGGGCTCGACCGCTCGCAAAAAGACACAA
GAGAAACCGATCAAGAGGAACCGCTCGGTCACTGGACACACCCAGAGACC
CCACCGCAGCAGAGAGCTCGACTCAACGCTCCGTCTCTAAGGTAGCGGTG
ACCATCAATTGCGTCCTGGGTAGCACCTGGTTATCATTTGACCCCGGTTT
GTATGTAGATGAGTGCAGCCGTTGGGTGTTCACGGAGATTTCGGGACGCA
AAGAACTCACACATACAGCTGTCACCCCACACCCCGCCTCGTCTTGCCAA
CACTTTCGCCACGCCAACAGCGTCCGAAACGGCGGCTATTATCGTACCAT
AAGCCCACCAATCGCTGTCGAGATTGCTCCACTTCTTTCTTCAGCCGTGG
GACAGGACCCAGTCAGCCATGGAATACGATCCATGTCGGCCCGAATTTAC
CAGGAAATATCATCAGTATATAATCAGTAATAATATCCCGGATTGATGTA
TGATAGTCGTCGGCAGTGAGGGCAATCATTGCTACAGCCGTAACTTGCAG
CGAAGTTTGGCCACCCGCTGAACCCTTCGCTTTGGTTTCTGTCTGAACGG
CATGCTCTCGGAAAACACGTGCGGCGACAGAGAAGAAGCGATGCGGCAGG
CAGGAGTGGAGATCCCCGAGCCGGGGAAAAACTACCAGGACCTTCCGAGA
GAGCAGTGGTCCGTCAGCCAGAGAATTCGCAACGCCAAGAGAGAGGAGTT
CGAGGCGCTGATTAAGGAGGGGGGCTACCGGGTGTGCGTGGATATGGCGT
TTGAGGATGTTATGGGGGAGAAGGCTCGCGCAAGCCTAGTGCAACAGGTG
GGTGCGGGATGAATGCGCAACTCGCTCCTGGATTGTGCACCATGCACCAC
TGCTGTACGCATGCGTTATGTGTATATGTATACAGTACATGTAAACTACT
GCAATTTTTTACAGAGTTGTGGATACCTGGTGCCCTAGATATGACAGCAT
TCCCTGAGGACGTAACCTCCAGACGGCTCCTTACCCGCATACATTCCCTC
CTCGCGGGGCACCTCGCCTCTTTGGCGTCTCCTCGCGAGTTTGGTTACCC
AAGACCTCACCTCGGTGCGTACTCCACGCCACCCTTCAAGAAGAGGTAGT
TGGTCGCCTGGGGATTTGCTTTGCCTCACACTTCGGGCCGTCGTACATAC
AACAACCAACACAATGGACGGTTTCTTCCTCGACGTGTTGTTCGAACTTT
TGTGGTACATTTACTGCTGCAGCGGTCCGTCCTTCCACCCCTTGAAGCTG
TCTCGGACAACGGTGGTTCGTCGTCGATGGAGTTGTAGCAAATACACACG
TGCAGGGGTCAATTGTGCCATCACACGCTCTCATGTGGAGGAGTACCATT
GCAAAAAGACTGTGTATACTACTGCGGTTGGTGACAACCAGCCCCACACA
ACGACATACGACTCTACGTGAGCATCTGTGTTTGGTCCTGCTAATGTTTT
CTTTGCTGTGCGCAGGAAACGGCGAGCGAGCGCAAGTTCGCGCTGAGAGC
CACTTTTATAGGTTTAGAGCAAGTATGGCATCGTCTTTGGCTCACTAGTT
ACCCGCCACGAGGTTCTTGTTTCGGTGCTGCGTTGCAGATGGTTTGCTGT
TGCACGGAGTAGATCCTTGTTCCTGCGTTGAAATATGTGGATTTGACTAC
AAGTATGATGCGTAAAGGCGAGTATTATACTAAGTTTTGCGTAGTCCATT
AGGGTTGCTGTGGAACACACCCAGTGCAACGGTTTCCCGGGAGGCGGTAG
AGGTTTTCCGTGGTGCCTGCTACGGTGTTCTTTCCTGTGTACAATTCACA
GATCGAGCATAGTTTGTTTTCCCGGAGGCGATGGACTGTGTCCGTAGTGC
CTGCTGTGGTGTTGTTTGTGGCGTATAATATGATAGGCGGATCGATTGTC
AACGCTACCCGACGCTTACTGCCGTACATCATCGTCTTCGCACGTGTTGT
CTGCTACTGTAACAGATACTGTACCTGTATGGCTCCAACCGAAAGGCACC
GCAGCCGTCTTTTCTGACTCTGAGCGGTGTGGGGCCGTTGCTGACAAAGG
GCATCAAGAGGCTGCAGGGGTTCGATACCTGGGTCGGGGTGGACACGCAG
TCCCGGTGCTATACGGAGTTGTTCGACAAAGGTACGGGACGCCGCAAGAC
GAAAACGTAGGGGGGTGACGACTCGAAATTGCGGTATAATGGTTGTGCGA
TTCATTTCGCACCAGCAGTCTGCAATTATACCGCGGTCGGGTTTGAAAAC
TGCGTGGGCATGGTCGGTCTTGCAATCGATTAATGCGTGTGCTTTCCCGT
GCGCTAAATAGTTCCCCTTTTCAGAACCTGCCAAGAGCTTCGCGCATTGC
AGTACGGCGTCCTTCTTGGTATCTCCAAATACGCCGTGCGTGTGGGGATG
CCCCCTGTCCCGTGGCCGTAATTGCTCTTCGGACGAACCACTCGCAAAAG
GCACCGGTACACACAGATCCCGTTGTGGTATCCCTTTGAGATAGTTACCC
CTCGTATTGGTGCCTCTCAAGCGCGCCCCTCTGACATGTGCGATCAACCA
ACTGACGCCGTCTGTCATGGTCATGTATCGTCCCGTTTCCCTGACAACGC
ACCGTTTGGTTGCGCGCCTCCTCTGCAGATGAATTGGTGTATCTAACCGC
AGACTCGCCCAACACAATAACCCAGCTGGACAAGAAGAAGGTTTACGTCC
TCGGTGGCCTGGTAGACCGGAATGCGTGCAAGGGGATGTGCTTCGACAAG
GCAACGGTAAGTCGCTCGTCCCAAGGTGGAGGTGTCCATCAGCTCCTGTT
TTTGCGGTGTGATCGTGTTTTTGTGACCACCCGCAGCGCGCAGCGGGTGC
TTGTGGATTGTGTCGAAAATACGACTTCAGTTGCTTGATGCGCGAATTGA
GGCGTCTCACTACTGTACGAGAAAGTGAGTCAGTGGCATTTAGTCGTCTT
CGTAGGTACGCCCGCCAAGTTCTCTAGTGGTTCGAGTGCGTCACTTTGAC
AGACACCGCCGATCGAGATTGTGTACCTAGTGCAAGTTCCAATTGGTACC
GAGCCTTAGCTCTCAAATCATGTGGTGAGATTTTTGCTGAGCAGGATCCG
GTATCCGGAGTGGCTACATCTACGCATACGCCTGGGTTGCAGATAGACCC
TGGATGCTCTTGCTGGGTGTTTGTTTGTTGTGCTTTGGCACCACCGTAAA
ATAGTGAGGCCTGCCTGTAGTTTCTTCGGGGTTGTATTTTGGCGTCGTTT
GTTGTCAACGGGGGATACAGGCATGGCGAGATGCCTCTTTTGCGGGTATT
TTTCTTTTAGCCGGACGTCGTTAATAGCACAGGTGCTGCGAGGGGTACCC
TACGGGAGCCTTGTGCGTAGGTTTCGAGAACAAGCCCTGGGAGTCCGCCA
GTACAAGATTCGTGCAAGGTTCCAACCTTTTAGGATCGGGTTCAATGTGC
CGTTCCATAGCGCCGGCGCGGGTAATAATGGCAAGAGCCGTTATGGCGTG
TCATACGATACGTTTATTTCCTGCACAAGCGCATCGTTTGGTCGTGGATT
GGTGTAAAGCGTGAATACACGCCCCGAAAGGATACGTGCCAGCGCTGTTG
TACATTCTTGGTTGGTTTTCGTCGCCTTTTGATTGTCGAACGCTTAGAGT
GGTCGCCTACTGCGGGTTGGATTGGGTACGCTCTGGTGTACGACTGTCCG
ATTCGCTTGTTGACAAGGAGCTCTCCTCTCAAGAGTCCAGGGACGCCTGA
GTAGGCTCCTGCGTGAACCGAATGGTCTCGCCGCAATGGGCCGGTCTGTG
CAGATACCAAGCTGTGTGCTAGGGTTGACGCGTCTTGGATCTCCTATTTT
TACGCCGCATGCATGTTTCCGAAATCCGCGCCCGTAGGATCAAGGAATCG
CGACAGCGAAACTTCCTCTGAAGAAAGAAGACTTGCGTGGGACCCACAGC
AAGGTGAGAGCCGAAGAGGGCGGTAGCTGGTGAGGGCACGGATCCAGACG
TGACTTTAAAAAGCGCCTGCGGTGTGTGTGCTACTTTTGTTTCACTTTTG
GGCACTGCACCGCGGGACATGCGGAGCGGACGCGTCACTAGCCTGCCAGC
TGGAAGAGTCGCCTCTGTGCTCCGTGCTATGTTTGTGGCGGAAAAAAAAA
ATCTACATGTTCTAGACGTGGATGGCCCACATGCTAGGCAAAACGATTGT
GGTATGAATGGCGGGACCCGCGTTGTGTTCTGCCTCTTGTGCAACCCACG
CGCCGCGCCGTTGAAGGGCTGCAAGAACCGTTGAGCCCGAGTGTACGCAT
GTACATCAATTTCTCCCGTACGCGTTGTTTCCTGCTATGCGAGCTGTGTG
GTCGACGCGGCTGTGCAGAGAACGCCACCTCCGAGGTTACTTCATTCCGT
CCTCGTTGCATCAAGTGCACGCGATCGCCCCCTGTGCCGATCGAACACGT
GGGATAGGACGTTCGTCCCACGTATTTATCACACCACCTATGGTCCTTGT
CCTGCGTGTGTGTTACCCAGTCCCCGAACGATTGGCCTCCCTCCTCCCCC
ATCACCTCGCTGCCGCTTGCATCCAGGTCCTTGCCACGAACCACGTGTTC
GACATCCTTGCGCGGGCGATGGGGCAGGGGGGTGATCTCCAGAAGATAGA
GGACACGATGCTGCCGCCACGCAAGCGCGCCGGCTGGACAGGAGGAGACG
ACCGTGGCCCTTCCAGCAAAAGCAGCTCCGCTCAAGAGAAACCCGCAGGG
AACGGGATAGAGCCAAGCGTCGAGGGCGGCGACGACAACGCGGGTGTCAG
TGTAGGGGGTGGTGAAGCAAGCGGGTTGGAGGGTGGCGGGCGTTGTGATA
GCGGCTCTGGTATAGATTCGGGGCCTGCGGCGGTCGGGGGCAGCGAAGAG
GCCGTTGGGAATGCCCAAACGGATGGGTGTGCAGTCGGAGTGCAGTCCGG
TGGCGGAGAGGGGGAGGAAAATTGTCAGGACGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9638:1267..7150+

>mRNA_S-dermatodea_contig9638.17651.1 ID=mRNA_S-dermatodea_contig9638.17651.1|Name=mRNA_S-dermatodea_contig9638.17651.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at S-dermatodea_contig9638:1267..7150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACGGCCAACCCAGCAGCGGCGGCAGGTGCTCTGCCTACCGATGG
GGACAACAGCAGCGTCCCCGAAGACGTCGGTGGAACCCCAACAGACACGG
TCACACCAGTGGCCAAAGTCGGTGGCGGGGATGGGGATGAGGAGGGCTGC
GACCAAAATAATCAGGATGGGGGCGGCAAAGGCAACGGTGGTGGCAATGG
CGACGGAGATGGCAATGGCGATGGAGATGGTGGCGAGGACGGCGAGGGGC
GTGCGAGACGCCCCCCCAGACCACCGGGTTCTATCAGGAAGGGTCGGATA
GAAAAGCGAAAGGCCGGCTGGGCGGCGAAAAAGGCGCTTGCGAAAGAGAA
AAGGAGGGAGGAGCGAGAACGCAGATGGACACGGCCAACCCAGCAGCGGC
GGCAGGTGCTCTGCCTACCGATGGGGACAACAGCAGCGTCCCCGAAGACG
TCGGTGGAACCCCAACAGACACGGTCACACCAGTGGCCAAAGTCGGTGGC
GGGGATGGGGATGAGGAGGGCTGCGACCAAAATAATCAGGATGGGGGCGG
CAAAGGCAACGGTGGTGGCAATGGCGACGGAGATGGCAATGGCGATGGAG
ATGGTGGCGAGGACGGCGAGGGGCGTGCGAGACGCCCCCCCAGACCACCG
GGTTCTATCAGGAAGGGTCGGATAGAAAAGCGAAAGGCCGGCTGGGCGGC
GAAAAAGGCGCTTGCGAAAGAGAAAAGGAGGGAGGAGCGAGAACGCAGAG
AAGAAGCGATGCGGCAGGCAGGAGTGGAGATCCCCGAGCCGGGGAAAAAC
TACCAGGACCTTCCGAGAGAGCAGTGGTCCGTCAGCCAGAGAATTCGCAA
CGCCAAGAGAGAGGAGTTCGAGGCGCTGATTAAGGAGGGGGGCTACCGGG
TGTGCGTGGATATGGCGTTTGAGGATGTTATGGGGGAGAAGGCTCGCGCA
AGCCTAGTGCAACAGAGAAGAAGCGATGCGGCAGGCAGGAGTGGAGATCC
CCGAGCCGGGGAAAAACTACCAGGACCTTCCGAGAGAGCAGTGGTCCGTC
AGCCAGAGAATTCGCAACGCCAAGAGAGAGGAGTTCGAGGCGCTGATTAA
GGAGGGGGGCTACCGGGTGTGCGTGGATATGGCGTTTGAGGATGTTATGG
GGGAGAAGGCTCGCGCAAGCCTAGTGCAACAGATACTGTACCTGTATGGC
TCCAACCGAAAGGCACCGCAGCCGTCTTTTCTGACTCTGAGCGGTGTGGG
GCCGTTGCTGACAAAGGGCATCAAGAGGCTGCAGGGGTTCGATACCTGGG
TCGGGGTGGACACGCAGTCCCGGTGCTATACGGAGTTGTTCGACAAAGAT
ACTGTACCTGTATGGCTCCAACCGAAAGGCACCGCAGCCGTCTTTTCTGA
CTCTGAGCGGTGTGGGGCCGTTGCTGACAAAGGGCATCAAGAGGCTGCAG
GGGTTCGATACCTGGGTCGGGGTGGACACGCAGTCCCGGTGCTATACGGA
GTTGTTCGACAAAGATGAATTGGTGTATCTAACCGCAGACTCGCCCAACA
CAATAACCCAGCTGGACAAGAAGAAGGTTTACGTCCTCGGTGGCCTGGTA
GACCGGAATGCGTGCAAGGGGATGTGCTTCGACAAGGCAACGATGAATTG
GTGTATCTAACCGCAGACTCGCCCAACACAATAACCCAGCTGGACAAGAA
GAAGGTTTACGTCCTCGGTGGCCTGGTAGACCGGAATGCGTGCAAGGGGA
TGTGCTTCGACAAGGCAACGGATCAAGGAATCGCGACAGCGAAACTTCCT
CTGAAGAAAGAAGACTTGCGTGGGACCCACAGCAAGGATCAAGGAATCGC
GACAGCGAAACTTCCTCTGAAGAAAGAAGACTTGCGTGGGACCCACAGCA
AGGTCCTTGCCACGAACCACGTGTTCGACATCCTTGCGCGGGCGATGGGG
CAGGGGGGTGATCTCCAGAAGATAGAGGACACGATGCTGCCGCCACGCAA
GCGCGCCGGCTGGACAGGAGGAGACGACCGTGGCCCTTCCAGCAAAAGCA
GCTCCGCTCAAGAGAAACCCGCAGGGAACGGGATAGAGCCAAGCGTCGAG
GGCGGCGACGACAACGCGGGTGTCAGTGTAGGGGGTGGTGAAGCAAGCGG
GTTGGAGGGTGGCGGGCGTTGTGATAGCGGCTCTGGTATAGATTCGGGGC
CTGCGGCGGTCGGGGGCAGCGAAGAGGCCGTTGGGAATGCCCAAACGGAT
GGGTGTGCAGTCGGAGTGCAGTCCGGTGGCGGAGAGGGGGAGGAAAATTG
TCAGGACGGGGTCCTTGCCACGAACCACGTGTTCGACATCCTTGCGCGGG
CGATGGGGCAGGGGGGTGATCTCCAGAAGATAGAGGACACGATGCTGCCG
CCACGCAAGCGCGCCGGCTGGACAGGAGGAGACGACCGTGGCCCTTCCAG
CAAAAGCAGCTCCGCTCAAGAGAAACCCGCAGGGAACGGGATAGAGCCAA
GCGTCGAGGGCGGCGACGACAACGCGGGTGTCAGTGTAGGGGGTGGTGAA
GCAAGCGGGTTGGAGGGTGGCGGGCGTTGTGATAGCGGCTCTGGTATAGA
TTCGGGGCCTGCGGCGGTCGGGGGCAGCGAAGAGGCCGTTGGGAATGCCC
AAACGGATGGGTGTGCAGTCGGAGTGCAGTCCGGTGGCGGAGAGGGGGAG
GAAAATTGTCAGGACGGG
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