mRNA_S-dermatodea_contig96096.17626.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig96096.17626.1
Unique NamemRNA_S-dermatodea_contig96096.17626.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: D7G0P8_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.310e-31
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYIGEMSP AVRGVLVS+KEAMIVVGML GYSIGW+LEDTV GWR TYGAG+ PAV M  GMF MPPSAR
Sbjct:  175 APAYIGEMSPAAVRGVLVSLKEAMIVVGMLFGYSIGWYLEDTVAGWRFTYGAGAFPAVIMFAGMFLMPPSAR 246          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A836CC74_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC74_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.490e-26
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYIGEMSPP++RG+LV MKEA IVVG+L+GY +G+ LEDTVGGWR +YG    PA+  LVGM+FMPPSAR
Sbjct:  171 APAYIGEMSPPSIRGLLVGMKEAFIVVGILIGYVVGYLLEDTVGGWRTSYGIAVGPALIQLVGMYFMPPSAR 242          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A7S0STX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STX7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-22
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYIGEM+P  +RG+LVS+KE  +V+GM+ GY+IG++  +TVGGWR TYG GS+ +V ML GM ++P SAR
Sbjct:   39 APAYIGEMAPSQIRGLLVSLKEGFVVLGMVFGYTIGYFFSETVGGWRYTYGFGSIISVIMLFGMIYLPYSAR 110          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A835ZBD5_9STRA (General substrate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.550e-21
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYIGEMSPP++RG LV +KEA IVVG+LLGY +G+  E T GGWR+ Y     PA+    GMF MPPSAR
Sbjct:  164 APAYIGEMSPPSIRGFLVGLKEAFIVVGILLGYIMGFAFEGTGGGWRVIYALAMGPAILQFAGMFLMPPSAR 235          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A7I3YWM5_PHYPA (MFS domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I3YWM5_PHYPA)

HSP 1 Score: 86.7 bits (213), Expect = 2.770e-19
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            AP YI E SP  +RG LVS+KEA+IVVG LLGY IGWW  D+VGGWR  +G  ++ A  M +GM+++PP  R
Sbjct:    4 APMYIAETSPSEIRGTLVSLKEALIVVGTLLGYLIGWWEIDSVGGWRFMFGFSALIAAVMGLGMWWLPPCPR 75          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A7S2UXZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXZ9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.820e-19
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            AP+YI EM+PP VRG+LVS+KE +IV+G+L+GY +G+  E TVGGW   YGA  + AV M VG + +PPSAR
Sbjct:  157 APSYIAEMAPPDVRGLLVSLKEGLIVLGILMGYVVGYAYESTVGGWGFIYGASCLMAVIMAVGTWLLPPSAR 228          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A7S2FR46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FR46_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.800e-18
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            AP YI EM+P  +RG LV++KEAMIVVGM+LGY IG++L+   G W+ TYGA    AV MLVG+  +PPSAR
Sbjct:  148 APTYIAEMAPSEIRGTLVALKEAMIVVGMVLGYGIGFFLQHQSGAWKFTYGASIPLAVFMLVGVTALPPSAR 219          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: F0Y6Q9_AURAN (General sugar transporter n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q9_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 5.530e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            AP+YI EMSP A+RG LVS+KEA IVVG+ LGY +G+ L +T GGWR TY A    A+ +  G + +PPSAR
Sbjct:  141 APSYIAEMSPAAIRGTLVSLKEAAIVVGICLGYGLGFALRETAGGWRYTYAASIPLALLLYWGAYCLPPSAR 212          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A059LQT5_9CHLO (Sugar transporter n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQT5_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 7.890e-17
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYI E SP  VRG+++S+KE ++VVG+LLGY + +   D VGGWR  YG G++PA+ +  GM F+P S R
Sbjct:  174 APAYIAETSPAHVRGLMISLKEGLVVVGILLGYVVSFVFVDAVGGWRWMYGLGALPALALGCGMLFLPESPR 245          
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Match: A0A8J9WKA5_9CHLO (D-xylose-proton symporter-like 3, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKA5_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 4.470e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 APAYIGEMSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPAVGMLVGMFFMPPSAR 216
            APAYI E +P  VRG+L+S+KEA +V+G+LLGY   +   D VGGWR  YG  + PA+ +L GM ++P S R
Sbjct:  170 APAYIAEAAPAKVRGLLISLKEAFVVIGILLGYLTSYLFIDDVGGWRAMYGLAAGPALILLAGMSWLPDSPR 241          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig96096.17626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P8_ECTSI2.310e-3183.33MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CC74_9STRA6.490e-2670.83Major facilitator superfamily domain-containing pr... [more]
A0A7S0STX7_9STRA1.030e-2259.72Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A835ZBD5_9STRA8.550e-2162.50General substrate transporter n=1 Tax=Tribonema mi... [more]
A0A7I3YWM5_PHYPA2.770e-1956.94MFS domain-containing protein n=1 Tax=Physcomitriu... [more]
A0A7S2UXZ9_9STRA6.820e-1958.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2FR46_9STRA1.800e-1859.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y6Q9_AURAN5.530e-1756.94General sugar transporter n=1 Tax=Aureococcus anop... [more]
A0A059LQT5_9CHLO7.890e-1752.78Sugar transporter n=1 Tax=Helicosporidium sp. ATCC... [more]
A0A8J9WKA5_9CHLO4.470e-1551.39D-xylose-proton symporter-like 3, chloroplastic n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig96096contigS-dermatodea_contig96096:153..371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue8.6e-22
Seed eggNOG ortholog2880.D7G0P8
Preferred nameVGT1
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005351,GO:0005353,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0007275,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009705,GO:0009791,GO:0009845,GO:0009909,GO:0009911,GO:0009941,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0015755,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034219,GO:0034220,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051119,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055085,GO:0065007,GO:0071702,GO:0090351,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:1902600,GO:1904659,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.5078883-CDS-S-dermatodea_contig96096:152..3501622925420.5078883-CDS-S-dermatodea_contig96096:152..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96096 153..350 -
1694079921.2546325-CDS-S-dermatodea_contig96096:152..3501694079921.2546325-CDS-S-dermatodea_contig96096:152..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96096 153..350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.5203774-UTR-S-dermatodea_contig96096:350..3711622925420.5203774-UTR-S-dermatodea_contig96096:350..371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig96096 351..371 -
1694079921.273252-UTR-S-dermatodea_contig96096:350..3711694079921.273252-UTR-S-dermatodea_contig96096:350..371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig96096 351..371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig96096.17626.1prot_S-dermatodea_contig96096.17626.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig96096 153..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig96096.17626.1

>prot_S-dermatodea_contig96096.17626.1 ID=prot_S-dermatodea_contig96096.17626.1|Name=mRNA_S-dermatodea_contig96096.17626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MSPPAVRGVLVSMKEAMIVVGMLLGYSIGWWLEDTVGGWRITYGAGSVPA
VGMLVGMFFMPPSAR*
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mRNA from alignment at S-dermatodea_contig96096:153..371-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig96096.17626.1 ID=mRNA_S-dermatodea_contig96096.17626.1|Name=mRNA_S-dermatodea_contig96096.17626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at S-dermatodea_contig96096:153..371- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCCCGCGTACATCGGAGAGATGTCGCCCCCCGCCGTCCGAGGTGTGCT GGTGTCGATGAAGGAGGCCATGATCGTGGTGGGCATGCTGCTGGGGTACA GCATCGGCTGGTGGCTGGAAGACACTGTCGGAGGCTGGAGGATCACCTAC GGAGCCGGGTCTGTCCCAGCCGTGGGGATGTTGGTGGGGATGTTCTTCAT GCCGCCGTCCGCGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig96096:153..371-

>mRNA_S-dermatodea_contig96096.17626.1 ID=mRNA_S-dermatodea_contig96096.17626.1|Name=mRNA_S-dermatodea_contig96096.17626.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig96096:153..371- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGCCCCCCGCCGTCCGAGGTGTGCTGGTGTCGATGAAGGAGGCCAT
GATCGTGGTGGGCATGCTGCTGGGGTACAGCATCGGCTGGTGGCTGGAAG
ACACTGTCGGAGGCTGGAGGATCACCTACGGAGCCGGGTCTGTCCCAGCC
GTGGGGATGTTGGTGGGGATGTTCTTCATGCCGCCGTCCGCGAGGTGAAT
GTCGCCCCCCGCCGTCCGAGGTGTGCTGGTGTCGATGAAGGAGGCCATGA
TCGTGGTGGGCATGCTGCTGGGGTACAGCATCGGCTGGTGGCTGGAAGAC
ACTGTCGGAGGCTGGAGGATCACCTACGGAGCCGGGTCTGTCCCAGCCGT
GGGGATGTTGGTGGGGATGTTCTTCATGCCGCCGTCCGCGAGGTGA
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