mRNA_S-dermatodea_contig9601.17622.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE) HSP 1 Score: 468 bits (1203), Expect = 7.080e-147 Identity = 243/329 (73.86%), Postives = 266/329 (80.85%), Query Frame = 2
Query: 23 GSAPVQEPPRLKGLVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMA----DLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
G AP EPPRLK LV VLRRLGVPVLELAFFP+EQRP LVV DPNEA+RGAL A HAL++TLAPPY ++IASGEDHGRD RGRKLRLRWGAL P DMDAL++GLSKPSDS P+ FPPSELDKLRDLPVWKTLSGKRVAVD RHFSL+ GGDVA LPLPPGASDRLLAPSPE+SDLIRDIGVEQV H GVVARFVLPELG V P+DR +LL HVR HWA LK++Q LV+ FKE +FIPV G+ +KA+KLFDPR+ VLKEIFGDEPDAFP GEF EESWLDVLVD+GL+NKLDR TILQCA KV
Sbjct: 3388 GPAPA-EPPRLKVLVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDHGRDARGRKLRLRWGALSPEDMDALLEGLSKPSDSSPPVGFPPSELDKLRDLPVWKTLSGKRVAVDRQRHFSLAAGGDVAHLPLPPGASDRLLAPSPELSDLIRDIGVEQVDHPGVVARFVLPELGTVPPDDRHKLLHHVRVHWAELKENQDLVNQFKEVAFIPVNGVPTKASKLFDPRTVVLKEIFGDEPDAFPAGEFGEESWLDVLVDIGLKNKLDRDTILQCAKKV 3715
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI) HSP 1 Score: 347 bits (890), Expect = 6.900e-105 Identity = 190/316 (60.13%), Postives = 212/316 (67.09%), Query Frame = 2
Query: 62 LVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMA----DLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
LV VLRRLGVPVLELAFFP+EQRP LVV DPNEA+RGAL A HAL++TLAPPY ++IASGEDHGRD RGRKLRLRWGAL P DMDAL+Q R F GGD+ LP G SDRLLAPSPE+SDLIRDIGVEQV H GVVARFVLPELG V P+DR +LL HVR HWA LK++Q LV+ FKE +FIPV G+ +KA+KLFDPR+ VLKEIFGDEPDAFP+GEF EE WLDVLVD+GL+NKLDR TILQCA KV
Sbjct: 1316 LVTVLRRLGVPVLELAFFPQEQRPWLVVGDPNEASRGALGAIHALKSTLAPPYXXXXXXXXXXXXXXXXXXXXXXXXXXEMIASGEDHGRDGRGRKLRLRWGALSPEDMDALLQ-----------------------------------------RQFRQGTGGDLTSFSLPSGTSDRLLAPSPELSDLIRDIGVEQVDHPGVVARFVLPELGTVPPDDRHKLLHHVRVHWAELKENQDLVNQFKEVAFIPVNGVPTKASKLFDPRTLVLKEIFGDEPDAFPSGEFGEEPWLDVLVDIGLKNKLDRDTILQCAKKV 1590
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A7S3YA36_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA36_HETAK) HSP 1 Score: 207 bits (526), Expect = 6.780e-61 Identity = 122/318 (38.36%), Postives = 178/318 (55.97%), Query Frame = 2
Query: 92 PVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGD---------------VADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFA-EESWLDVLVDVGLRNKLDRQTILQCATKV 997
PV+ELA+FP +QR +LV D A R L + H LR+ P YP+ E + E+ G RLRWG+L P MD +Q LS ++S + PS+ DK R LP ++TLSG RVA+ LS G D + LPLPP A++RLLAP P + DL +D+GV ++ +G++ARF+LP GA++ ++++ LL V +W LK+++ LVDA +E F+ ++A L+DPR+E+L++IF D P AFP FA +WL VL DVGLR +D++T L+CA ++
Sbjct: 2 PVVELAYFPGDQRAALVEQDDQAATRAILSSLHDLRSATGPSYPLDEG-------------------VGGVEEAGNP------RLRWGSLSPTQMDDFLQDLSHGANSSM-VSLAPSDRDKFRALPAFETLSGSRVALVAPGRGILSRGNDDQFYRLDRDSSAGLDLEALPLPPAATERLLAPKPRLQDLYQDLGVARLGGAGLLARFLLPSFGALTEQEKEALLAAVVVNWEALKEERELVDALREVPFLDG----ARAGALYDPRNELLRDIFADAPRAFPPARFAGSPAWLAVLADVGLRTGIDKETFLECARRL 289
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.310e-56 Identity = 126/331 (38.07%), Postives = 180/331 (54.38%), Query Frame = 2
Query: 47 PRLKGLVAVLRRLGVPVLELAFFPEEQRPSLV----VSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVD--------CARHFSLSNGGDVAD-LPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKG-MLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
PRL+ L +L LG PVL+ +F P E R ++ V+ P+ AAR ALH H+LR+ PPYP+ + AA AD A+ + G R ++ RLRW L D +AL+ L +P + PS+ KL++LPVW+T++G V + A + + G +VA LPLPP A LLA SP + D+ RD+ +E+++ +AR VLPEL ++P DR +LQ+V HW+ L + L + + F+ V G KL DPR+ V+ IF D PD FP G FA+ +WLDVL D+GL +R T L CA K+
Sbjct: 4676 PRLRQLRQLLHELGAPVLDFSFVPCETRNAVATAGGVTGPDAAARMALHGLHSLRSERTPPYPLP---------LRTPTAADAADDAAATQPQGAAAR-QQGRLRWSILSEADTEALLLALCRPGGEAGGLAVTPSDQQKLKELPVWRTMAGSSVCLSRPGANRAFFALERNAAEGENVAGGLPLPPSAQSMLLAHSPVLDDIYRDMQIERISMGDTLARMVLPELMRMTPADRDAVLQYVLEHWSQLSANAELKEKLGKVPFVTVSGDRRVLPEKLLDPRNAVMASIFDDAPDMFPQGAFAQPAWLDVLADLGLHKSFNRDTFLLCAKKL 4996
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6U4DDX2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DDX2_9STRA) HSP 1 Score: 159 bits (403), Expect = 7.400e-40 Identity = 92/229 (40.17%), Postives = 139/229 (60.70%), Query Frame = 2
Query: 341 RLRWGALRP---PDMDALVQGLSKPSDSGAPIVFPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM------LSKANKLFDPRSEVLKEIFGDEP-DAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
RL WG L D D L+ L P G P+VF P++++K+R P+++T+SG+RVA+ + F + +GG AD PL LL P + DL RD+GVE + GV+ RF+LP+ ++ ED+ +LL+ +W LK++ S+V+ KE +FIPV L KA++LFDPR+E+L IF +E + FP F + WL +L DVGL+ +LDR+T L+CA ++
Sbjct: 472 RLAWGELAAGGSSDADDLLLRLYSP---GVPLVFSPTDVEKMRSFPLYETVSGERVALG-SEEFVVLSGGSAADFPLTVTTGAFLLKPKETLKDLYRDLGVESLDDVGVLHRFLLPDFERLAEEDQGRLLKFTVGNWPRLKENTSVVERLKETAFIPVTPAAEAAPRLVKASELFDPRNELLGAIFEEEEGEVFPPPAFRSDEWLALLSDVGLQAELDRETFLECARRL 696
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: W7U1E4_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.990e-22 Identity = 93/353 (26.35%), Postives = 148/353 (41.93%), Query Frame = 2
Query: 62 LVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAARGALHATHALRNTLAPPYPISEACEARRQGASSAAAAAMADLIASGEDHGRDVRGRKLRLRWGALRPPDMDALVQGLSKPSDSG-APIVFPPSELDKLRDLPVWKTLSGKRVA----------------------------VDCA---RHFSLSNGG--------DVADLPLPPGASD-RLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWAT--LKQDQSLVDAFKEASFIPV-KGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCA 988
L+ +L R P+LELAFFP+ SLV +D + R + H + G KL GA ++D +++ + S G SEL+KLR LP ++T++G RV +D + R FS G +V P ++ ++L + DL +D+GV + + ++ R ++P+L + P R ++L ++ W + L D + V+A A FI KG L+ A+ DPR+E+L+E+F DEP FP GEF WL +L +GL+ K D + L+CA
Sbjct: 4399 LLRLLSRARAPLLELAFFPKAVVDSLVTADNRDVTRAIITCMHVFKE------------------------------------------GLKLDNLSGA----EIDHMIRRCTTSSQDGNVATALTASELEKLRQLPFFETITGNRVPLVQENGPYVVLDDRQIGRDRFLDEIMAIIDMSTTFRQFSDRPGSVVVQRTRFEVNSCDNSPALTECKVLKRKTALEDLYQDLGVATLKKTEILTRLLIPDLALMDPGLRSRVLDLIKNMWISEKLASDTAFVEALTAAKFIATEKGDLAMASAFLDPRNELLREVFEDEPSVFPPGEFGSRDWLPILGVLGLKTKCDGKIFLECA 4705
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A7S0YY12_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YY12_9CRYP) HSP 1 Score: 103 bits (256), Expect = 3.710e-21 Identity = 56/189 (29.63%), Postives = 100/189 (52.91%), Query Frame = 2
Query: 431 FPPSELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGMLSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
F E LR LP++++ SG V + +F G A G + LL + +GVE++ + ++ RF LP ++ +R + ++ + +W + + +LVD + F+ G L +A++LFDP+ ++L+ +FGD+P FPTG+FA + WL VL +GL++ + +QCA +V
Sbjct: 104 FTQQEAATLRSLPIFESRSGAFVPLSGGDYFICPPGMSAA------GGEEALL--KHQYPSFYASLGVEELDETALLERFTLPSFPSLGERERGEAVEKILRNWPRVSERPALVDKLRGLPFVETHGALLRADQLFDPKRQLLRTVFGDDP-VFPTGKFASDEWLPVLRALGLQSHVGPDVFVQCARRV 283
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: D0ABB5_9ORYZ (OO_Ba0005L10-OO_Ba0081K17.24 protein n=1 Tax=Oryza officinalis TaxID=4535 RepID=D0ABB5_9ORYZ) HSP 1 Score: 101 bits (251), Expect = 8.800e-20 Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 2
Query: 443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
ELD LR+LP++KT++G ++ + H LS A R L+ + ++ +GVEQ++ ++ RF LP G S ++++ +L ++ A+W L+ + S+V+ KE +F+ L K +L DP +L +F E FP F + WL +L GLR + I+QCATK+
Sbjct: 3641 ELDVLRELPIYKTVTGTYTSLSGSDHCILSPTAFFHP------ADSRCLSSTANADIFLQALGVEQLSDQEILLRFALPGFGNKSAQEQEDILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCTELFKPRELLDPSDALLTSVFSGERHKFPAERFMSDGWLVILRKAGLRTSTEADMIVQCATKI 3823
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: J3M2L5_ORYBR (RING-type domain-containing protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3M2L5_ORYBR) HSP 1 Score: 100 bits (249), Expect = 1.600e-19 Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 2
Query: 443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
+LD LR+LP++KT++G ++ + H +S P S R L + + ++ +GVEQ+T ++ RF LP G S +D++ +L ++ A+W L+ + S+V+ KE +F+ L K +L DP +L +F E FP F + WL +L GLR + I+QCATK+
Sbjct: 3886 QLDVLRELPIYKTVTGTYTSLSGSDHCIISPTAFFH-----PNDS-RCLTSTANANLFLQTLGVEQLTDQEILVRFALPGFGNKSAQDQEDILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCKDLFKPRELLDPSDALLTSVFSGERHKFPAERFMSDGWLVILRKAGLRTSTEADMIVQCATKI 4068
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Match: A0A6G1BSY2_9ORYZ (J domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BSY2_9ORYZ) HSP 1 Score: 100 bits (249), Expect = 1.600e-19 Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 2
Query: 443 ELDKLRDLPVWKTLSGKRVAVDCARHFSLSNGGDVADLPLPPGASDRLLAPSPEVSDLIRDIGVEQVTHSGVVARFVLPELGAVSPEDRKQLLQHVRAHWATLKQDQSLVDAFKEASFIPVKGM----LSKANKLFDPRSEVLKEIFGDEPDAFPTGEFAEESWLDVLVDVGLRNKLDRQTILQCATKV 997
ELD LR+LP++KT++G ++ + H LS R L+ + ++ +GVEQ++ ++ RF LP G S ++++ +L ++ A+W L+ + S+V+ KE +F+ L K +L DP +L +F E FP +F + WL +L GLR + TI+QCATKV
Sbjct: 3738 ELDVLRELPMYKTVTGTYTSLSGSDHCILSPTAFFRP------TDSRCLSSTANADLFLQALGVEQLSDQEILVRFALPGFGNKSAQEQEGILAYLYANWKDLQLNSSVVNTLKETNFLTSANEFCTELFKPRELLDPSDALLTSVFSGERLKFPAEKFMSDGWLVILRKAGLRTSTEADTIVQCATKV 3920 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9601.17622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9601.17622.1 >prot_S-dermatodea_contig9601.17622.1 ID=prot_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=328bp MGGGSAPVQEPPRLKGLVAVLRRLGVPVLELAFFPEEQRPSLVVSDPNEAback to top mRNA from alignment at S-dermatodea_contig9601:4399..6689+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9601.17622.1 ID=mRNA_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2291bp|location=Sequence derived from alignment at S-dermatodea_contig9601:4399..6689+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9601:4399..6689+ >mRNA_S-dermatodea_contig9601.17622.1 ID=mRNA_S-dermatodea_contig9601.17622.1|Name=mRNA_S-dermatodea_contig9601.17622.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at S-dermatodea_contig9601:4399..6689+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |