mRNA_S-dermatodea_contig9601.17620.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9601.17620.1
Unique NamemRNA_S-dermatodea_contig9601.17620.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9601.17620.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.850e-40
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    1 DLEALARSSREANEARQAVARWETALSRCKEMWKQLHGVQLLPLANGKAGTFGTSLAIGGGQRFIVATRRQQGLMRQVNGRFVHLKATRRLSKFFERDEFLQMMGIVRFSPAILAENL 354
            D EA+ARS  EA+ AR A+ +W++A+ +CK +WK+L GV LLPLANG AG+F T+ A+ G +RF+V TRRQQGL+ ++  RFVHLKATRRL++FFERD+FL+MMGIVRFSPA+LAENL
Sbjct: 2981 DAEAVARS--EAHAARLALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTTFALAGRKRFVVGTRRQQGLLPKLTNRFVHLKATRRLARFFERDDFLEMMGIVRFSPALLAENL 3096
[Close]
BLAST of mRNA_S-dermatodea_contig9601.17620.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.560e-39
Identity = 75/118 (63.56%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:    1 DLEALARSSREANEARQAVARWETALSRCKEMWKQLHGVQLLPLANGKAGTFGTSLAIGGGQRFIVATRRQQGLMRQVNGRFVHLKATRRLSKFFERDEFLQMMGIVRFSPAILAENL 354
            D EA+ARS  EA+ AR A+ +W++A+ +CK +WK+L GV LLPLANG AG+F T+ A+ G +RF+V TRRQQGL+ ++  RFVHLKATRRL++FFERD+FL+MMGIVRFSP +LAENL
Sbjct: 1022 DAEAVARS--EAHAARFALGQWQSAMDKCKVVWKELQGVPLLPLANGTAGSFPTAFALAGRKRFVVGTRRQQGLLPKLADRFVHLKATRRLARFFERDDFLEMMGIVRFSPTLLAENL 1137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9601.17620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K688_9PHAE3.850e-4064.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG4_ECTSI4.560e-3963.56RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9601contigS-dermatodea_contig9601:1448..2562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3e-33
Seed eggNOG ortholog2880.D8LJG4
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9601.17620.1prot_S-dermatodea_contig9601.17620.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9601 1448..2561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.2109709-CDS-S-dermatodea_contig9601:1447..14981622925420.2109709-CDS-S-dermatodea_contig9601:1447..1498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 1448..1498 +
1694079920.9943945-CDS-S-dermatodea_contig9601:1447..14981694079920.9943945-CDS-S-dermatodea_contig9601:1447..1498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 1448..1498 +
1622925420.223477-CDS-S-dermatodea_contig9601:1874..21291622925420.223477-CDS-S-dermatodea_contig9601:1874..2129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 1875..2129 +
1694079921.014804-CDS-S-dermatodea_contig9601:1874..21291694079921.014804-CDS-S-dermatodea_contig9601:1874..2129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 1875..2129 +
1622925420.2355473-CDS-S-dermatodea_contig9601:2507..25611622925420.2355473-CDS-S-dermatodea_contig9601:2507..2561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 2508..2561 +
1694079921.0316267-CDS-S-dermatodea_contig9601:2507..25611694079921.0316267-CDS-S-dermatodea_contig9601:2507..2561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 2508..2561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9601.17620.1

>prot_S-dermatodea_contig9601.17620.1 ID=prot_S-dermatodea_contig9601.17620.1|Name=mRNA_S-dermatodea_contig9601.17620.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
DLEALARSSREANEARQAVARWETALSRCKEMWKQLHGVQLLPLANGKAG
TFGTSLAIGGGQRFIVATRRQQGLMRQVNGRFVHLKATRRLSKFFERDEF
LQMMGIVRFSPAILAENLHL
back to top

mRNA from alignment at S-dermatodea_contig9601:1448..2562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9601.17620.1 ID=mRNA_S-dermatodea_contig9601.17620.1|Name=mRNA_S-dermatodea_contig9601.17620.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1115bp|location=Sequence derived from alignment at S-dermatodea_contig9601:1448..2562+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCTTGAAGCGCTTGCAAGGAGCTCAAGGGAGGCTAACGAAGCCAGACA
GGTAATTCATGTTGTACGAGTCTGGCCGTGTGCAGGGGAAAGGGTTTGGG
GGACGGGGGCCGGGGTGTGGGCAGTGTCGGCGGAGCGTTGTTTGGAGGGT
TTTTGTGTTTTAGCGAGGCTTGTGTTGGGGATGTCTGACCGTGCTGGTGG
AGTTAATATGGGAATTGAGGGGAATCGCAGTTTAACTCGGGTTGTTTTTG
CTTCGACCCTAACGACGAAGCCAACGCAGAAAGAGCTCAAATGCGGTGTT
GTGTGATTTCACATTGCTGCCCCATGCATTGATAGGAAATTTGGTAATAG
ATGCGGTGTCTCGGACGTGCTGCGTACCCGACCGCATCTCTCACACAGTC
GCTCCGCGTCATCGTTTCACTCTGCAGGCGGTAGCGCGGTGGGAGACCGC
CCTCAGCAGGTGCAAGGAGATGTGGAAGCAGCTGCACGGGGTGCAGTTGC
TTCCTCTGGCGAACGGGAAAGCGGGTACCTTCGGCACGTCCCTCGCGATA
GGCGGTGGGCAGCGGTTTATCGTGGCCACTCGACGGCAGCAGGGGTTGAT
GCGGCAGGTGAACGGTCGGTTCGTGCACCTGAAGGCGACGAGGAGGCTGA
GCAAGTTCTTCGAGCGGGACGAGTTCTTGCAGGTGATTGATTGCTGCTGC
GAACGATTGCATTCCCGCGCGGGTCCGTTTCCGTCAGCTTCGCGACAACT
CGACAGCCTGGAGTGTGCACCGCGCCCCGTCTCGGCGTCCTCCCTATTAC
CTCGTTCGAAACGAAAACCTTCGCCACTCTTAATAGTTTGCCTAGGTTTG
CTCCCCAAATGACCACCCCCCGCCACAAACGCAAGGATGATGACCAGCAG
CTGGTATCATCCTTGTGAAACGCAGCCTGGCCGGCGAAAACCCGGCATAT
CGCTCCGTCCCGGCATTGGTGGTATGCGTGGTCTATGTCCGTTAAAATAC
GACATGCGTTTAACATAAGTACACCCCCCCCCGCCACGCCGGTGCATCAA
CTCAATGCAGATGATGGGCATCGTGCGCTTCAGCCCCGCTATCCTCGCGG
AAAACCTTCACCTTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9601:1448..2562+

>mRNA_S-dermatodea_contig9601.17620.1 ID=mRNA_S-dermatodea_contig9601.17620.1|Name=mRNA_S-dermatodea_contig9601.17620.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig9601:1448..2562+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCTTGAAGCGCTTGCAAGGAGCTCAAGGGAGGCTAACGAAGCCAGACA
GGACCTTGAAGCGCTTGCAAGGAGCTCAAGGGAGGCTAACGAAGCCAGAC
AGGCGGTAGCGCGGTGGGAGACCGCCCTCAGCAGGTGCAAGGAGATGTGG
AAGCAGCTGCACGGGGTGCAGTTGCTTCCTCTGGCGAACGGGAAAGCGGG
TACCTTCGGCACGTCCCTCGCGATAGGCGGTGGGCAGCGGTTTATCGTGG
CCACTCGACGGCAGCAGGGGTTGATGCGGCAGGTGAACGGTCGGTTCGTG
CACCTGAAGGCGACGAGGAGGCTGAGCAAGTTCTTCGAGCGGGACGAGTT
CTTGCAGGCGGTAGCGCGGTGGGAGACCGCCCTCAGCAGGTGCAAGGAGA
TGTGGAAGCAGCTGCACGGGGTGCAGTTGCTTCCTCTGGCGAACGGGAAA
GCGGGTACCTTCGGCACGTCCCTCGCGATAGGCGGTGGGCAGCGGTTTAT
CGTGGCCACTCGACGGCAGCAGGGGTTGATGCGGCAGGTGAACGGTCGGT
TCGTGCACCTGAAGGCGACGAGGAGGCTGAGCAAGTTCTTCGAGCGGGAC
GAGTTCTTGCAGATGATGGGCATCGTGCGCTTCAGCCCCGCTATCCTCGC
GGAAAACCTTCACCTTATGATGGGCATCGTGCGCTTCAGCCCCGCTATCC
TCGCGGAAAACCTTCACCTT
back to top