mRNA_S-dermatodea_contig96.17618.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig96.17618.1
Unique NamemRNA_S-dermatodea_contig96.17618.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig96.17618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig96contigS-dermatodea_contig96:39205..41417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925419.9783642-CDS-S-dermatodea_contig96:39204..393961622925419.9783642-CDS-S-dermatodea_contig96:39204..39396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96 39205..39396 +
1694079920.8241212-CDS-S-dermatodea_contig96:39204..393961694079920.8241212-CDS-S-dermatodea_contig96:39204..39396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96 39205..39396 +
1622925419.991636-CDS-S-dermatodea_contig96:41305..414161622925419.991636-CDS-S-dermatodea_contig96:41305..41416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96 41306..41416 +
1694079920.8340764-CDS-S-dermatodea_contig96:41305..414161694079920.8340764-CDS-S-dermatodea_contig96:41305..41416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig96 41306..41416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig96.17618.1prot_S-dermatodea_contig96.17618.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig96 39205..41416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig96.17618.1

>prot_S-dermatodea_contig96.17618.1 ID=prot_S-dermatodea_contig96.17618.1|Name=mRNA_S-dermatodea_contig96.17618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
TRSASLAGSASPVMADAAVFKAEVDALQTSKGNITKFFYRDIEDVHPGSG
RAEIDFGTWRCDGRVIRVVKKRLRRLQNVHYDQLRREVTKEALATFRVSR
M
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mRNA from alignment at S-dermatodea_contig96:39205..41417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig96.17618.1 ID=mRNA_S-dermatodea_contig96.17618.1|Name=mRNA_S-dermatodea_contig96.17618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2213bp|location=Sequence derived from alignment at S-dermatodea_contig96:39205..41417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCGGTCTGCTTCGCTCGCCGGAAGCGCCAGTCCTGTCATGGCTGATGC
TGCTGTTTTCAAGGCCGAGGTGGATGCTTTGCAGACGAGCAAGGGGAACA
TTACGAAGTTTTTCTACCGTGACATAGAAGATGTCCACCCAGGCTCGGGC
CGGGCTGAGATCGATTTTGGAACGTGGCGCTGCGATGGCAGGGTGAGATA
CGAGATAGCGATGACTAGGGCTTCCAGCATACGCCCTTTGCGCGAAAGGC
AAGGCGCTCGTGACTTTGAAATGTTGGCGTGTGAGTCTAGGCTGAGTTGC
CGCTGTTAGCCTTCTTGCCACGGTGAGCCCCTGACTCTCAAGCAGAGAGA
GGGAAAGGGTCGCGTCTCCACAGAACTACCCATATTAGCCAGGCAGCGTC
TCGGGGCGTCTTTGTGAGATAGGTCGCACGCGCAGGTTGTGATCGCCGCC
ACGTTCTTGAAGAAGACGGGATCGAAGCAGAGCCTGCCTTGATCAAAAGC
ATGGCAGGATGATTTCTCTAGTTTTCATCAGGCATGCATGGGTTTATATT
ATATAGGGAAAATACAAGGCCGTTATTTTGAAAATGGCAGTAATGTGGCA
CCTGTACCTTCTGATAGTCATAATATATTAAATATAAATATGTATACAAG
CGTGTGCAGCAGTATTAATCTGTAACAAAAGGTAACGCTTGGAAGCGTGA
AACCTGAACCTGTGTGGAATACCAAGTGGCTCTTCTCACCTTCCATTAGC
TTTTGTCACGCGTTGCTGCGCGGATCCGTCTGTCTGCGGTGCACGTTGGC
ATACGGGAAGCAGGATAAACATTCATAAACGCACTCATACTGCTGTACAC
AATGAGTATTGCCCTTGTACCAATATATAGGGGATATCGAAATCCTTTGG
TGTATTTTCACGATAAAATTTGTTCGAGCTTTTTCTCACTAGGGATTTAA
AGTCACCGCCTCTTAGCTCTCCGATTTTACTTTTTGGGATACTGCACAAG
CGGCAGCACTACGCTTGTTTGCAGTTAAACGGCGCTCGCAGCTACGTTCA
CCATCCGGCCGCGCCCGTTCACCAACGCACACCTCACGGGTGTAGCTGTG
GCTGTCCGCTATAATATATTAGTTGTTAATTGCACATCGCTTGGCGGATG
TGCCCCAAAATTTGTTCGAGCTTTTTCTCAATAGGGATTTAAAGTCACCG
CCTCTTAGCTCTCCGATTACACTTTTTGGGATACTGTACAAGCGGCAGCA
CTACGCTTGTTTGCAGTTAAACGGCGCTCGCAGCTACGCTCGCCATCCGG
CCGCGCCCGTTCGCCAACGCACACCTCACGGGTGTAGCTGTGGCTGTCCG
CTATAATATAATAGTTGTTAATTGCACATCGCTTGGCTGATGTTCCAGGA
CTCTTAGATGATATTTCGTAGATTTGGCCGGTTCCCCCTTGACGCACGCA
AGAAGACACCCATGGCTAACAAAGCGTGTTTATGAGGGGTGATTGCTTTG
ATAGGTAGTATTGATCTTCAGATGTGAGACCATCATCATCGTTAGACCCG
TCATCGAGACGAAAGCGTTACTCGCATATACTAACAGCGGGCAGCTTAGC
TCAGGCGACGGCAGTAGTAGACAAGAGAGTTGCATTGAATATGGGCGGGT
ACATATTTCGGTTAATATTGCTAGCAGACCATGCACAATGGCGACCCGTG
ATGTTTGCTAACGCTGGGTTGTTCAGCATCAAAGCGGCACGAACGTCCAA
GCATGTGACTGTGCAATTAATATCAAGCCTGTGCTTTAGGGTGGTGTACC
TTGTTCATTTTGTACAGGTTTCGTGCTCCGAAGCGATCAACACGGTATGT
CCTGTATACCGATGTCGAACACAGCTTGTTGTTCAGATTCAGCCGCTCAC
AGTAGAGACGTCCATACAAAGAACTGCTACATACAGTATGCTCTACGCGT
ACGATGAGCGCCTGAACAGAACGGACCACATAAGAAACAGCACGGAACGG
CCGTTCGACGAGTTTCAACCCCAAATCGAGACTGACCTCCTAGGCCCGCA
ATGCGCCCCGGCTCTCCATGTGATTGGTTTTACGCAAAACAAACCCCCCA
GGTGATCCGTGTGGTGAAAAAGAGGCTGCGGCGGTTGCAGAACGTGCATT
ACGACCAGCTCCGGCGCGAGGTGACCAAGGAGGCTTTGGCTACGTTCCGA
GTCTCGCGCATGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig96:39205..41417+

>mRNA_S-dermatodea_contig96.17618.1 ID=mRNA_S-dermatodea_contig96.17618.1|Name=mRNA_S-dermatodea_contig96.17618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig96:39205..41417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCGGTCTGCTTCGCTCGCCGGAAGCGCCAGTCCTGTCATGGCTGATGC
TGCTGTTTTCAAGGCCGAGGTGGATGCTTTGCAGACGAGCAAGGGGAACA
TTACGAAGTTTTTCTACCGTGACATAGAAGATGTCCACCCAGGCTCGGGC
CGGGCTGAGATCGATTTTGGAACGTGGCGCTGCGATGGCAGGACCCGGTC
TGCTTCGCTCGCCGGAAGCGCCAGTCCTGTCATGGCTGATGCTGCTGTTT
TCAAGGCCGAGGTGGATGCTTTGCAGACGAGCAAGGGGAACATTACGAAG
TTTTTCTACCGTGACATAGAAGATGTCCACCCAGGCTCGGGCCGGGCTGA
GATCGATTTTGGAACGTGGCGCTGCGATGGCAGGGTGATCCGTGTGGTGA
AAAAGAGGCTGCGGCGGTTGCAGAACGTGCATTACGACCAGCTCCGGCGC
GAGGTGACCAAGGAGGCTTTGGCTACGTTCCGAGTCTCGCGCATGGTGAT
CCGTGTGGTGAAAAAGAGGCTGCGGCGGTTGCAGAACGTGCATTACGACC
AGCTCCGGCGCGAGGTGACCAAGGAGGCTTTGGCTACGTTCCGAGTCTCG
CGCATG
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