mRNA_S-dermatodea_contig9596.17614.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9596.17614.1
Unique NamemRNA_S-dermatodea_contig9596.17614.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9596.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9596contigS-dermatodea_contig9596:3354..3679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925419.731599-UTR-S-dermatodea_contig9596:3353..33761622925419.731599-UTR-S-dermatodea_contig9596:3353..3376Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9596 3354..3376 +
1694079920.6444092-UTR-S-dermatodea_contig9596:3353..33761694079920.6444092-UTR-S-dermatodea_contig9596:3353..3376Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9596 3354..3376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925419.7435355-CDS-S-dermatodea_contig9596:3376..36791622925419.7435355-CDS-S-dermatodea_contig9596:3376..3679Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9596 3377..3679 +
1694079920.6549509-CDS-S-dermatodea_contig9596:3376..36791694079920.6549509-CDS-S-dermatodea_contig9596:3376..3679Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9596 3377..3679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9596.17614.1prot_S-dermatodea_contig9596.17614.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9596 3377..3679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9596.17614.1

>prot_S-dermatodea_contig9596.17614.1 ID=prot_S-dermatodea_contig9596.17614.1|Name=mRNA_S-dermatodea_contig9596.17614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MTILPRCGDERLYLRFEERLDGLTGARRPRGAISWHGEPGFEKRRWAVLR
MPYVENEKNQPNCGRRSQNEPPGWPTRWFRCVPLPSTLEALYADCEASAP
N
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mRNA from alignment at S-dermatodea_contig9596:3354..3679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9596.17614.1 ID=mRNA_S-dermatodea_contig9596.17614.1|Name=mRNA_S-dermatodea_contig9596.17614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=326bp|location=Sequence derived from alignment at S-dermatodea_contig9596:3354..3679+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGCACGGAGGGTCTTGCATTCATGACCATCCTGCCGAGGTGCGGAGAT
GAGAGGCTGTACTTGCGCTTCGAGGAAAGACTCGACGGTCTCACGGGAGC
GCGGCGGCCGCGTGGGGCTATCAGCTGGCACGGAGAGCCAGGCTTTGAGA
AACGCCGATGGGCGGTCCTCAGAATGCCGTACGTCGAAAATGAGAAGAAC
CAACCGAACTGCGGCAGACGCAGCCAAAATGAACCTCCCGGATGGCCAAC
GAGGTGGTTTCGTTGCGTTCCTCTACCAAGCACGCTTGAAGCCCTCTATG
CTGACTGTGAAGCTTCAGCGCCGAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9596:3354..3679+

>mRNA_S-dermatodea_contig9596.17614.1 ID=mRNA_S-dermatodea_contig9596.17614.1|Name=mRNA_S-dermatodea_contig9596.17614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig9596:3354..3679+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCATCCTGCCGAGGTGCGGAGATGAGAGGCTGTACTTGCGCTTCGA
GGAAAGACTCGACGGTCTCACGGGAGCGCGGCGGCCGCGTGGGGCTATCA
GCTGGCACGGAGAGCCAGGCTTTGAGAAACGCCGATGGGCGGTCCTCAGA
ATGCCGTACGTCGAAAATGAGAAGAACCAACCGAACTGCGGCAGACGCAG
CCAAAATGAACCTCCCGGATGGCCAACGAGGTGGTTTCGTTGCGTTCCTC
TACCAAGCACGCTTGAAGCCCTCTATGCTGACTGTGAAGCTTCAGCGCCG
AATATGACCATCCTGCCGAGGTGCGGAGATGAGAGGCTGTACTTGCGCTT
CGAGGAAAGACTCGACGGTCTCACGGGAGCGCGGCGGCCGCGTGGGGCTA
TCAGCTGGCACGGAGAGCCAGGCTTTGAGAAACGCCGATGGGCGGTCCTC
AGAATGCCGTACGTCGAAAATGAGAAGAACCAACCGAACTGCGGCAGACG
CAGCCAAAATGAACCTCCCGGATGGCCAACGAGGTGGTTTCGTTGCGTTC
CTCTACCAAGCACGCTTGAAGCCCTCTATGCTGACTGTGAAGCTTCAGCG
CCGAAT
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