mRNA_S-dermatodea_contig9594.17611.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9594.17611.1
Unique NamemRNA_S-dermatodea_contig9594.17611.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.390e-37
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 2
Query:   20 EADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFSK 241
            +AD R ECWFCLASPQLEDHLVCSVADE+YLAQPKGGLVPGHVLIVPVSHQQRYSELSAEG +EAE+YKESF +
Sbjct:  251 KADGRLECWFCLASPQLEDHLVCSVADEIYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGAKEAEQYKESFKR 324          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.420e-22
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 2
Query:   20 EADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYK 226
            E D ++ECWFCLASP LE+HLV +VA+E Y+A PKGGLVP HVLIVP++H QRYSELS    +E E +K
Sbjct:  600 EGDQQRECWFCLASPTLEEHLVTNVAEEAYVALPKGGLVPDHVLIVPIAHIQRYSELSDACVKEVEAFK 668          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: A0A7S2F7S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7S3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.420e-19
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   11 HHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFS 238
            H+  +  R +CWFCLASPQLE HL+ SVA+ VYLA PKGG+VP HVL+VP+ H  R S+L      E  RYK+  +
Sbjct:  114 HNTPSFERHDCWFCLASPQLEAHLIVSVAEHVYLAIPKGGMVPQHVLLVPIDHVTRQSDLGPPVLSELLRYKQGLA 189          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: UPI00097D8B1D (CWF19-like protein 1 n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D8B1D)

HSP 1 Score: 87.4 bits (215), Expect = 8.080e-19
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESF 235
            QP  HP+  P   CWFCLASPQ+E HLV S+    YLA  KGGL P HVLI+P+ H Q   ELS+E   E E+YK + 
Sbjct:   90 QPRRHPQ--PTGPCWFCLASPQVEKHLVISIGSHCYLALAKGGLTPHHVLILPIGHYQSVVELSSEVVEEMEKYKSAL 165          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: UPI00148DF2B5 (CWF19-like protein 1 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00148DF2B5)

HSP 1 Score: 87.8 bits (216), Expect = 1.940e-18
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFS 238
            QP  HP+  P   CWFCLASPQ+E HLV S+    YLA  KGGL P HVLI+P+ H Q   ELS+E   E E+YK + +
Sbjct:  333 QPRRHPQ--PTGPCWFCLASPQVEKHLVISIGSHCYLAVAKGGLTPHHVLILPIGHYQSVVELSSEVVEEMEKYKSALT 409          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: A0A3P8UWD1_CYNSE (CWF19 like cell cycle control factor 1 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8UWD1_CYNSE)

HSP 1 Score: 87.4 bits (215), Expect = 2.660e-18
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESF 235
            QP HHP+  P   CWFCLASPQ+E HLV S+ +  Y+A  KGGL P HVLI+P+ H Q   +LS+E   E ++YK + 
Sbjct:  335 QPRHHPQ--PTGPCWFCLASPQVEKHLVISIGEHCYVALAKGGLTPRHVLILPIGHYQSVVDLSSEVVEEMKKYKSAL 410          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: A0A8D3ADA0_SCOMX (Uncharacterized protein n=2 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3ADA0_SCOMX)

HSP 1 Score: 87.4 bits (215), Expect = 2.670e-18
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFS 238
            QP  HP+  P   CWFCLASPQ+E HLV S+    YLA  KGGL P HVLI+P+ H Q   ELS+E   E E+YK + +
Sbjct:  345 QPRRHPQ--PTGPCWFCLASPQVEKHLVISIGTHCYLALAKGGLTPHHVLILPIGHYQSVVELSSEVVEEMEKYKSALT 421          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: C3Y265_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3Y265_BRAFL)

HSP 1 Score: 87.0 bits (214), Expect = 3.570e-18
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   17 PEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFSK 241
            P   P   CWFCLASP++E HLV SV D  YLA  KGGLVP HVLI+P+ H Q   E++AE   E E+YK +  K
Sbjct:  315 PPPKPTGPCWFCLASPEVEKHLVVSVGDHTYLALAKGGLVPDHVLILPIGHYQSMVEVTAEVHEEIEKYKSALRK 389          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: I3JUF7_ORENI (Uncharacterized protein n=27 Tax=Cichlidae TaxID=8113 RepID=I3JUF7_ORENI)

HSP 1 Score: 87.0 bits (214), Expect = 3.620e-18
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYKESFSK 241
            QP  HP+  P   CWFCLASPQ+E HLV S+    YLA  KGGL P HVLI+P+ H Q   +LS+E   E E+YK +  K
Sbjct:  328 QPRRHPQ--PSGPCWFCLASPQVEKHLVISIGTHCYLALAKGGLTPRHVLILPIGHYQSVVDLSSEVVEEMEKYKSALRK 405          
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Match: UPI001BD3DAD1 (CWF19-like protein 1 n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD3DAD1)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:    2 QPGHHPEADPRQECWFCLASPQLEDHLVCSVADEVYLAQPKGGLVPGHVLIVPVSHQQRYSELSAEGTREAERYK 226
            QP  HP+  P   CWFCLASPQ+E HLV S+    YLA+ KGGL P HVLI+P+ H Q   +LS+E   E E+YK
Sbjct:  336 QPRRHPQ--PTGPCWFCLASPQVEKHLVISIGSHCYLAKAKGGLTPQHVLILPIGHYQSVVDLSSEVVEEMEKYK 408          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9594.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD91_ECTSI1.390e-3787.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA2.420e-2265.22CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A7S2F7S3_9STRA5.420e-1953.95Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
UPI00097D8B1D8.080e-1953.85CWF19-like protein 1 n=1 Tax=Paralichthys olivaceu... [more]
UPI00148DF2B51.940e-1853.16CWF19-like protein 1 n=2 Tax=Hippoglossus TaxID=82... [more]
A0A3P8UWD1_CYNSE2.660e-1851.28CWF19 like cell cycle control factor 1 n=1 Tax=Cyn... [more]
A0A8D3ADA0_SCOMX2.670e-1853.16Uncharacterized protein n=2 Tax=Scophthalmus maxim... [more]
C3Y265_BRAFL3.570e-1854.67Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
I3JUF7_ORENI3.620e-1852.50Uncharacterized protein n=27 Tax=Cichlidae TaxID=8... [more]
UPI001BD3DAD13.630e-1854.67CWF19-like protein 1 n=1 Tax=Cheilinus undulatus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9594contigS-dermatodea_contig9594:658..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size250
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925419.5481665-CDS-S-dermatodea_contig9594:657..7821622925419.5481665-CDS-S-dermatodea_contig9594:657..782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9594 658..782 -
1694079920.5401683-CDS-S-dermatodea_contig9594:657..7821694079920.5401683-CDS-S-dermatodea_contig9594:657..782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9594 658..782 -
1622925419.5593-CDS-S-dermatodea_contig9594:1468..15921622925419.5593-CDS-S-dermatodea_contig9594:1468..1592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9594 1469..1592 -
1694079920.5510435-CDS-S-dermatodea_contig9594:1468..15921694079920.5510435-CDS-S-dermatodea_contig9594:1468..1592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9594 1469..1592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9594.17611.1prot_S-dermatodea_contig9594.17611.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9594 658..1592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9594.17611.1

>prot_S-dermatodea_contig9594.17611.1 ID=prot_S-dermatodea_contig9594.17611.1|Name=mRNA_S-dermatodea_contig9594.17611.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
AARAPPRGRSSTGMLVLPRLSAAGGPSRLLGRRRGLPRPTQGRLGPGARA
NRAGVAPAAIQRAQRGGYQGSGAVQGVLQQVS*
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mRNA from alignment at S-dermatodea_contig9594:658..1592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9594.17611.1 ID=mRNA_S-dermatodea_contig9594.17611.1|Name=mRNA_S-dermatodea_contig9594.17611.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=935bp|location=Sequence derived from alignment at S-dermatodea_contig9594:658..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCCCGGGCACCACCCCGAGGCCGATCCTCGACAGGAATGCTGGTTCT GCCTCGCCTCTCCGCAGCTGGAGGACCATCTCGTTTGCTCGGTCGCCGAC GAGGTCTACCTCGCCCAACCCAAGGTATGGTTATGGTGTGGTAAGCTGTG GTTTGGTTTGGTGTGGCGTGGTATGGTATGGTGTGGAACGGTATTCTATG GTATGGTATGGTGTTGTGTGGTTTGTGCGGTGCGGTGCCGTTAGGTATCT GGTATTGCGGAAGTAAATACTTTTATTTGTTAAAACACCGCGTGAAGCTT TTTGTCCTCGTGGTGAATTAATTTCCTGTTTTTTTTTCCCGTTTTTTTCC CGTTTTTTCCTACAATAATGTACCGTTTTTTTTTACGCCTTTTCAGTACA TGTATCATACAGTAATTATATATAGAGATGTTCCAAGTGCCTTCCTCTCG GACATTCCTTTTCCCCGGTCGCATCCATTCAACACATTCAGGCGCAGCTA AACGACGCCCTGCCAGCGTAGCAGCCTGCCTGCCACGAGTCGTATAGCGA CCGCGTCCTGCCAAGACACACCTCACGGGCGTAGGTATTGATATAATATT AATAGTTTCATACCGGTTCTACCATAACGCCCAAAAATCTAAAAATAAAC GAAACACACAAAAAACGCACACGAATAACGACAAAGCACACGAAACACAC ACGCACATATGCGGCGATGTCACATGATTATAAAAACACGACGAACACAT TTGTCGCCGTCGTCACGTTTTTTTTTTTTTTTTTTCTCGTTTGTTGCCCG TTCTGGACAGGGAGGCTTGGTCCCGGGGCACGTGCTAATCGTGCCGGTGT CGCACCAGCAGCGATACAGCGAGCTCAGCGCGGAGGGTACCAGGGAAGCG GAGCGGTACAAGGAGTCCTTCAGCAAGTGAGTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9594:658..1592-

>mRNA_S-dermatodea_contig9594.17611.1 ID=mRNA_S-dermatodea_contig9594.17611.1|Name=mRNA_S-dermatodea_contig9594.17611.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig9594:658..1592- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCCCGGGCACCACCCCGAGGCCGATCCTCGACAGGAATGCTGGTTCT
GCCTCGCCTCTCCGCAGCTGGAGGACCATCTCGTTTGCTCGGTCGCCGAC
GAGGTCTACCTCGCCCAACCCAAGGCAGCCCGGGCACCACCCCGAGGCCG
ATCCTCGACAGGAATGCTGGTTCTGCCTCGCCTCTCCGCAGCTGGAGGAC
CATCTCGTTTGCTCGGTCGCCGACGAGGTCTACCTCGCCCAACCCAAGGG
AGGCTTGGTCCCGGGGCACGTGCTAATCGTGCCGGTGTCGCACCAGCAGC
GATACAGCGAGCTCAGCGCGGAGGGTACCAGGGAAGCGGAGCGGTACAAG
GAGTCCTTCAGCAAGTGAGTTAGGGAGGCTTGGTCCCGGGGCACGTGCTA
ATCGTGCCGGTGTCGCACCAGCAGCGATACAGCGAGCTCAGCGCGGAGGG
TACCAGGGAAGCGGAGCGGTACAAGGAGTCCTTCAGCAAGTGAGTTAG
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