mRNA_S-dermatodea_contig9593.17609.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9593.17609.1
Unique NamemRNA_S-dermatodea_contig9593.17609.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9593.17609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9593contigS-dermatodea_contig9593:2572..3454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7FU86
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0588@1,KOG0588@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-25_003130.1
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925418.4450405-CDS-S-dermatodea_contig9593:2571..27121622925418.4450405-CDS-S-dermatodea_contig9593:2571..2712Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 2572..2712 -
1694079920.4330645-CDS-S-dermatodea_contig9593:2571..27121694079920.4330645-CDS-S-dermatodea_contig9593:2571..2712Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 2572..2712 -
1622925418.4588506-CDS-S-dermatodea_contig9593:3268..34541622925418.4588506-CDS-S-dermatodea_contig9593:3268..3454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 3269..3454 -
1694079920.4446576-CDS-S-dermatodea_contig9593:3268..34541694079920.4446576-CDS-S-dermatodea_contig9593:3268..3454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 3269..3454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9593.17609.1prot_S-dermatodea_contig9593.17609.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9593 2572..3454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9593.17609.1

>prot_S-dermatodea_contig9593.17609.1 ID=prot_S-dermatodea_contig9593.17609.1|Name=mRNA_S-dermatodea_contig9593.17609.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
HRYPDDPFNRHTYRCCVDSTDEAAPEMSAKKAATITGGFMANGDAQDIIR
GLGRVLLGMGAKIEGVQADGTRTFKSSFKVSAIMHTEEKSSGGAVGIIAS
LFRIVRGDG
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mRNA from alignment at S-dermatodea_contig9593:2572..3454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9593.17609.1 ID=mRNA_S-dermatodea_contig9593.17609.1|Name=mRNA_S-dermatodea_contig9593.17609.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=883bp|location=Sequence derived from alignment at S-dermatodea_contig9593:2572..3454- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGGTACCCCGACGACCCGTTCAACAGACACACGTACCGTTGTTGTGT
TGACAGCACAGACGAGGCAGCGCCGGAAATGAGCGCGAAGAAGGCGGCAA
CCATTACAGGCGGTTTCATGGCGAACGGGGACGCGCAGGACATCATCAGG
GGGCTGGGACGGGTGCTCCTGGGCATGGGCGCAAAGGTGGGTAAAATGTG
CCTGGTGTGTTTTGTGTGGGTGTGTGTGTGTGTTTTTTTTGTGTGTTTTT
TAAATGACCTCTTGGTTTTGTTGTCGTCCCTTTGTCGCTCGTGTGCTGCT
CTTTCCCGTGTATTGGTGCGTTTTTGAATGAGGCGGTACCTGTCTTAGGC
GTGTGGAGATGTGCGGGGCACCTTGCACACTATAGATAGCAGTACGCGGC
AAGTCGGATCGAGCGTTGAGACCAGCTTGTTGTCGCTGCGAAACCAACCC
GCTCCGCTCCCCGCGCACCAACCCAACTAAAGCAACGCTGAACAACAAAA
AGGCAGAAGAAGGCTATGATACTTGTACGGGTTCATCCTGTCCCGGCCCG
CAGACAGCGGTCGGGCGTACGAGATGCTCTAGGTGCAATGTACGAGCCCC
GGCGGTCTGCATATAGCATATAGCCCTTGCAATCAACCCACCGCTTCACT
CACTCCATATAGCCCTTGCAATCAACCCACCGCTTCACTCACTCCCCGTC
CCTATCCCTTATCCGCTGCTGAAATGTGGACTTGTGATTCAGATCGAAGG
GGTTCAGGCAGACGGAACCCGCACCTTCAAGTCTTCGTTCAAGGTCTCGG
CGATTATGCATACAGAAGAGAAGTCGAGCGGTGGCGCCGTGGGCATCATC
GCCTCGCTGTTCCGCATCGTTCGAGGGGACGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9593:2572..3454-

>mRNA_S-dermatodea_contig9593.17609.1 ID=mRNA_S-dermatodea_contig9593.17609.1|Name=mRNA_S-dermatodea_contig9593.17609.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig9593:2572..3454- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGGTACCCCGACGACCCGTTCAACAGACACACGTACCGTTGTTGTGT
TGACAGCACAGACGAGGCAGCGCCGGAAATGAGCGCGAAGAAGGCGGCAA
CCATTACAGGCGGTTTCATGGCGAACGGGGACGCGCAGGACATCATCAGG
GGGCTGGGACGGGTGCTCCTGGGCATGGGCGCAAAGCACAGGTACCCCGA
CGACCCGTTCAACAGACACACGTACCGTTGTTGTGTTGACAGCACAGACG
AGGCAGCGCCGGAAATGAGCGCGAAGAAGGCGGCAACCATTACAGGCGGT
TTCATGGCGAACGGGGACGCGCAGGACATCATCAGGGGGCTGGGACGGGT
GCTCCTGGGCATGGGCGCAAAGATCGAAGGGGTTCAGGCAGACGGAACCC
GCACCTTCAAGTCTTCGTTCAAGGTCTCGGCGATTATGCATACAGAAGAG
AAGTCGAGCGGTGGCGCCGTGGGCATCATCGCCTCGCTGTTCCGCATCGT
TCGAGGGGACGGGATCGAAGGGGTTCAGGCAGACGGAACCCGCACCTTCA
AGTCTTCGTTCAAGGTCTCGGCGATTATGCATACAGAAGAGAAGTCGAGC
GGTGGCGCCGTGGGCATCATCGCCTCGCTGTTCCGCATCGTTCGAGGGGA
CGGG
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