mRNA_S-dermatodea_contig95826.17601.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95826.17601.1
Unique NamemRNA_S-dermatodea_contig95826.17601.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A7S6U9W3_9STRA (Photosystem I reaction center subunit II n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W3_9STRA)

HSP 1 Score: 290 bits (741), Expect = 2.740e-99
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYNVI 420
            MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYNVI
Sbjct:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYNVI 140          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: B2XT55_HETAK (Photosystem I reaction center subunit II n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT55_HETAK)

HSP 1 Score: 229 bits (583), Expect = 3.290e-75
Identity = 102/138 (73.91%), Postives = 125/138 (90.58%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYN 414
            MT  L+ ++PIFGGSTGGWLRAAE+EEKY ITW++ KEQ+FEMPTGGAA+ML GENLLYLARKEQCLALGTQLRS +I +Y+IYR+FP GE+QYLHPKDGVFPEKVN GR+ +G+++FSIGKNPNP ++KF+GK T++
Sbjct:    1 MTLNLQTFSPIFGGSTGGWLRAAEIEEKYVITWSSSKEQLFEMPTGGAAIMLQGENLLYLARKEQCLALGTQLRSFKINDYKIYRLFPNGEIQYLHPKDGVFPEKVNPGRLAVGSRNFSIGKNPNPVSVKFSGKGTFD 138          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A516ZAH5_9STRA (Photosystem I reaction center subunit II n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAH5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.710e-74
Identity = 105/138 (76.09%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYN 414
            M+F +K  +PIFGGSTGGWLRAAEVEEKY ITW + KEQ+FEMPTGGAA+M  GENLLYLARKEQCLALGTQLR+ +I +Y+IYRIFP GEVQYLHPKDGVFPEKVN GR+ +  KDFSIGKNPNP  +KFTGK T++
Sbjct:    1 MSFDIKTPSPIFGGSTGGWLRAAEVEEKYGITWTSSKEQIFEMPTGGAAIMRSGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRMGVNNKDFSIGKNPNPIKVKFTGKGTFD 138          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A8F0FAL2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAL2_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 7.180e-73
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 393
            M  +  +YTPIFGGSTGGWLR+AE EEKY ITWNAP EQ+FEMPT G A+ML G+NLLYLARKEQCLALGTQLR L+IK+Y+IYRIFPGGE+Q+LHPKDGVFPE  NAGR P+G KDFSIGKNPNPA+IK+
Sbjct:    1 MAIFPSKYTPIFGGSTGGWLRSAEFEEKYVITWNAPTEQLFEMPTAGTALMLKGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNAGRTPVGKKDFSIGKNPNPASIKW 131          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: B7T226_VAULI (Photosystem I reaction center subunit II n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T226_VAULI)

HSP 1 Score: 222 bits (566), Expect = 1.280e-72
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTY 411
            M   LK Y P FGGSTGGWLRAAEVEEKYAITW + KEQ FEMPTGGAAVML  +NLLYLARKEQCLALGTQL+  +I +Y+IYRIFP GEVQ+LHPKDGVFPEKVN GR+ +G+++FSIGKNPNP ++KF+G++TY
Sbjct:    1 MNLNLKSYFPKFGGSTGGWLRAAEVEEKYAITWTSSKEQTFEMPTGGAAVMLNDQNLLYLARKEQCLALGTQLKKFKINDYKIYRIFPNGEVQFLHPKDGVFPEKVNVGRLAVGSRNFSIGKNPNPISVKFSGQETY 137          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: PSAD_TRICV (Photosystem I reaction center subunit II n=94 Tax=Sar TaxID=2698737 RepID=PSAD_TRICV)

HSP 1 Score: 219 bits (559), Expect = 1.500e-71
Identity = 104/137 (75.91%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTY 411
            MT  L+   P FGGSTGGWLRAAEVEEKYAITW + KEQ+FEMPTGGAA+M  GENLLYLARKEQCLALGTQLR+ +I +Y+IYRIFP GEVQYLHPKDGVFPEKVN GR  + ++ FSIGKNPNPA+IKF+G  TY
Sbjct:    1 MTLNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTY 137          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A7S0CD48_9STRA (Photosystem I reaction center subunit II n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD48_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.500e-71
Identity = 103/137 (75.18%), Postives = 116/137 (84.67%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTY 411
            MT  L+   P FGGSTGGWLRAAEVEEKYAITW + KEQVFEMPTGGAA+M  GENL+Y ARKEQC+ALGTQLR+ ++ +Y+IYRIFP GEVQYLHPKDGVFPEKVN GRI    +DFSIGKNPNPA+IKF+G  TY
Sbjct:    1 MTLNLQTSFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQVFEMPTGGAAIMRNGENLIYFARKEQCMALGTQLRTFKLNDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRISTNRRDFSIGKNPNPASIKFSGTATY 137          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: UPI001EDDB867 (photosystem I reaction center subunit II (ferredoxin-binding) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=UPI001EDDB867)

HSP 1 Score: 219 bits (559), Expect = 1.500e-71
Identity = 103/137 (75.18%), Postives = 116/137 (84.67%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTY 411
            MT  L+   P FGGSTGGWLR+AEVEEKYAITWN+ KEQ+FEMPTGGAA+M  GENLLYLARKEQCLALGTQLR+ +I  Y+IYRIFP GEVQ+LHPKDGVFPEK N GRI    ++FSIGKNPNPA+IKF+G  TY
Sbjct:    1 MTLNLQTPFPTFGGSTGGWLRSAEVEEKYAITWNSTKEQIFEMPTGGAAIMKTGENLLYLARKEQCLALGTQLRTFKINNYKIYRIFPSGEVQFLHPKDGVFPEKTNPGRIATNNRNFSIGKNPNPASIKFSGTSTY 137          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A2R4QPT8_9PHAE (Photosystem I reaction center subunit II n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QPT8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.690e-71
Identity = 99/131 (75.57%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 393
            M+ Y  +Y PIFGGSTGGWLR+AE EEKY ITWN+ KEQ+FEMPT G A+ML+G+NLLYLARKEQCLALGTQLR L+IK+Y+IYRIFPGGE+Q+LHPKDGVFPE  N GR P+G +DFSIGKNPNPA+IK+
Sbjct:    1 MSIYPSKYMPIFGGSTGGWLRSAEFEEKYVITWNSEKEQLFEMPTAGTALMLLGQNLLYLARKEQCLALGTQLRKLKIKDYKIYRIFPGGEIQFLHPKDGVFPETSNEGRTPVGKRDFSIGKNPNPASIKW 131          
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Match: A0A8E5XRI2_9PHAE (Photosystem I reaction center subunit II n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI2_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.520e-71
Identity = 102/132 (77.27%), Postives = 119/132 (90.15%), Query Frame = 1
Query:    1 MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAVMLIGENLLYLARKEQCLALGTQLRSLR-IKEYRIYRIFPGGEVQYLHPKDGVFPEKVNAGRIPIGTKDFSIGKNPNPATIKF 393
            MT +  +  P+FGGSTGGWLR+AEVEEKYAITWN+PKEQ+FEMPT GAA+ML GENLLYLARKEQCLALGTQLR ++ IK+Y+IYRIFPGGEVQ+LHPKDGVFPE  N GR+P+G +DFSIGKNPNPA+IK+
Sbjct:    1 MTVFPSKNVPLFGGSTGGWLRSAEVEEKYAITWNSPKEQIFEMPTAGAALMLQGENLLYLARKEQCLALGTQLRKVKKIKDYKIYRIFPGGEVQFLHPKDGVFPETSNEGRMPVGKRDFSIGKNPNPASIKW 132          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95826.17601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9W3_9STRA2.740e-99100.00Photosystem I reaction center subunit II n=1 Tax=S... [more]
B2XT55_HETAK3.290e-7573.91Photosystem I reaction center subunit II n=2 Tax=H... [more]
A0A516ZAH5_9STRA2.710e-7476.09Photosystem I reaction center subunit II n=3 Tax=D... [more]
A0A8F0FAL2_9PHAE7.180e-7377.86Photosystem I reaction center subunit II n=1 Tax=D... [more]
B7T226_VAULI1.280e-7274.45Photosystem I reaction center subunit II n=1 Tax=V... [more]
PSAD_TRICV1.500e-7175.91Photosystem I reaction center subunit II n=94 Tax=... [more]
A0A7S0CD48_9STRA1.500e-7175.18Photosystem I reaction center subunit II n=1 Tax=P... [more]
UPI001EDDB8671.500e-7175.18photosystem I reaction center subunit II (ferredox... [more]
A0A2R4QPT8_9PHAE1.690e-7175.57Photosystem I reaction center subunit II n=4 Tax=P... [more]
A0A8E5XRI2_9PHAE3.520e-7177.27Photosystem I reaction center subunit II n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95826contigS-dermatodea_contig95826:92..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue5.1e-56
Seed eggNOG ortholog2880.D1J785
Preferred namepsaD
KEGG koko:K02692
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28I81@1,2QQIC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925418.0150433-CDS-S-dermatodea_contig95826:91..5141622925418.0150433-CDS-S-dermatodea_contig95826:91..514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95826 92..514 -
1694079920.164724-CDS-S-dermatodea_contig95826:91..5141694079920.164724-CDS-S-dermatodea_contig95826:91..514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95826 92..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95826.17601.1prot_S-dermatodea_contig95826.17601.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95826 92..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95826.17601.1

>prot_S-dermatodea_contig95826.17601.1 ID=prot_S-dermatodea_contig95826.17601.1|Name=mRNA_S-dermatodea_contig95826.17601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
MTFYLKQYTPIFGGSTGGWLRAAEVEEKYAITWNAPKEQVFEMPTGGAAV
MLIGENLLYLARKEQCLALGTQLRSLRIKEYRIYRIFPGGEVQYLHPKDG
VFPEKVNAGRIPIGTKDFSIGKNPNPATIKFTGKQTYNVI*
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mRNA from alignment at S-dermatodea_contig95826:92..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95826.17601.1 ID=mRNA_S-dermatodea_contig95826.17601.1|Name=mRNA_S-dermatodea_contig95826.17601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at S-dermatodea_contig95826:92..514- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACTTTTTATTTAAAACAGTACACACCAATTTTCGGTGGTAGCACAGG TGGCTGGCTACGTGCAGCAGAAGTTGAAGAAAAATATGCCATTACCTGGA ATGCACCTAAAGAACAAGTTTTTGAAATGCCAACCGGTGGTGCTGCAGTA ATGTTAATTGGTGAAAACCTTTTATATCTAGCTCGAAAAGAACAATGTCT TGCTTTGGGCACTCAATTAAGATCTCTACGAATTAAAGAATATAGAATTT ATAGAATTTTTCCTGGTGGAGAAGTTCAGTATTTGCATCCAAAAGATGGA GTATTTCCAGAGAAAGTAAATGCTGGTCGAATCCCTATTGGCACTAAAGA TTTTTCTATTGGTAAAAATCCTAATCCAGCAACCATTAAGTTTACAGGTA AACAAACATATAATGTAATCTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig95826:92..514-

>mRNA_S-dermatodea_contig95826.17601.1 ID=mRNA_S-dermatodea_contig95826.17601.1|Name=mRNA_S-dermatodea_contig95826.17601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig95826:92..514- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACTTTTTATTTAAAACAGTACACACCAATTTTCGGTGGTAGCACAGG
TGGCTGGCTACGTGCAGCAGAAGTTGAAGAAAAATATGCCATTACCTGGA
ATGCACCTAAAGAACAAGTTTTTGAAATGCCAACCGGTGGTGCTGCAGTA
ATGTTAATTGGTGAAAACCTTTTATATCTAGCTCGAAAAGAACAATGTCT
TGCTTTGGGCACTCAATTAAGATCTCTACGAATTAAAGAATATAGAATTT
ATAGAATTTTTCCTGGTGGAGAAGTTCAGTATTTGCATCCAAAAGATGGA
GTATTTCCAGAGAAAGTAAATGCTGGTCGAATCCCTATTGGCACTAAAGA
TTTTTCTATTGGTAAAAATCCTAATCCAGCAACCATTAAGTTTACAGGTA
AACAAACATATAATGTAATCTAGATGACTTTTTATTTAAAACAGTACACA
CCAATTTTCGGTGGTAGCACAGGTGGCTGGCTACGTGCAGCAGAAGTTGA
AGAAAAATATGCCATTACCTGGAATGCACCTAAAGAACAAGTTTTTGAAA
TGCCAACCGGTGGTGCTGCAGTAATGTTAATTGGTGAAAACCTTTTATAT
CTAGCTCGAAAAGAACAATGTCTTGCTTTGGGCACTCAATTAAGATCTCT
ACGAATTAAAGAATATAGAATTTATAGAATTTTTCCTGGTGGAGAAGTTC
AGTATTTGCATCCAAAAGATGGAGTATTTCCAGAGAAAGTAAATGCTGGT
CGAATCCCTATTGGCACTAAAGATTTTTCTATTGGTAAAAATCCTAATCC
AGCAACCATTAAGTTTACAGGTAAACAAACATATAATGTAATCTAG
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