mRNA_S-dermatodea_contig9582.17600.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9582.17600.1
Unique NamemRNA_S-dermatodea_contig9582.17600.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9582.17600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9582contigS-dermatodea_contig9582:7436..7878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9582.17600.1prot_S-dermatodea_contig9582.17600.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9582 7456..7806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.9535599-UTR-S-dermatodea_contig9582:7435..74551622925417.9535599-UTR-S-dermatodea_contig9582:7435..7455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9582 7436..7455 +
1694079920.1366487-UTR-S-dermatodea_contig9582:7435..74551694079920.1366487-UTR-S-dermatodea_contig9582:7435..7455Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9582 7436..7455 +
1622925417.9836295-UTR-S-dermatodea_contig9582:7806..78781622925417.9836295-UTR-S-dermatodea_contig9582:7806..7878Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9582 7807..7878 +
1694079920.1546474-UTR-S-dermatodea_contig9582:7806..78781694079920.1546474-UTR-S-dermatodea_contig9582:7806..7878Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9582 7807..7878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.9689264-CDS-S-dermatodea_contig9582:7455..78061622925417.9689264-CDS-S-dermatodea_contig9582:7455..7806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9582 7456..7806 +
1694079920.1455297-CDS-S-dermatodea_contig9582:7455..78061694079920.1455297-CDS-S-dermatodea_contig9582:7455..7806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9582 7456..7806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9582.17600.1

>prot_S-dermatodea_contig9582.17600.1 ID=prot_S-dermatodea_contig9582.17600.1|Name=mRNA_S-dermatodea_contig9582.17600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MHCTRPCDAVTDKKITLLPQQLPNAIHPQHPPQLPRPVAFQGARNARTRG
FYSWCPYPRGNTKGKHVYLYIKNMVLTHETQLCKEMQNLLSGYFSGSRIY
MYIKLTTKTSLADRLL*
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mRNA from alignment at S-dermatodea_contig9582:7436..7878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9582.17600.1 ID=mRNA_S-dermatodea_contig9582.17600.1|Name=mRNA_S-dermatodea_contig9582.17600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=443bp|location=Sequence derived from alignment at S-dermatodea_contig9582:7436..7878+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGCCACCCAACACCTGCATGCACTGCACAAGGCCGTGCGATGCTGTG
ACCGATAAAAAAATCACCCTGCTGCCACAGCAGTTACCAAATGCAATCCA
CCCTCAACACCCCCCCCAGCTCCCTCGACCGGTAGCTTTCCAAGGCGCGC
GAAACGCGCGCACAAGAGGCTTTTATAGCTGGTGCCCGTATCCTCGCGGC
AATACGAAAGGAAAACATGTATACTTGTATATCAAAAACATGGTCCTAAC
GCACGAAACTCAATTGTGCAAAGAAATGCAAAACCTCCTCAGCGGCTATT
TTAGTGGGAGTAGGATATACATGTATATAAAACTGACGACTAAAACATCA
CTCGCCGACAGATTACTTTGAAAGGTGCGGCCAAAGGGTACGTATCCCAA
ATCGACCAAAAGGAAGAGGCAAACGACCACCGAAACGCCACCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9582:7436..7878+

>mRNA_S-dermatodea_contig9582.17600.1 ID=mRNA_S-dermatodea_contig9582.17600.1|Name=mRNA_S-dermatodea_contig9582.17600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig9582:7436..7878+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACTGCACAAGGCCGTGCGATGCTGTGACCGATAAAAAAATCACCCT
GCTGCCACAGCAGTTACCAAATGCAATCCACCCTCAACACCCCCCCCAGC
TCCCTCGACCGGTAGCTTTCCAAGGCGCGCGAAACGCGCGCACAAGAGGC
TTTTATAGCTGGTGCCCGTATCCTCGCGGCAATACGAAAGGAAAACATGT
ATACTTGTATATCAAAAACATGGTCCTAACGCACGAAACTCAATTGTGCA
AAGAAATGCAAAACCTCCTCAGCGGCTATTTTAGTGGGAGTAGGATATAC
ATGTATATAAAACTGACGACTAAAACATCACTCGCCGACAGATTACTTTG
AATGCACTGCACAAGGCCGTGCGATGCTGTGACCGATAAAAAAATCACCC
TGCTGCCACAGCAGTTACCAAATGCAATCCACCCTCAACACCCCCCCCAG
CTCCCTCGACCGGTAGCTTTCCAAGGCGCGCGAAACGCGCGCACAAGAGG
CTTTTATAGCTGGTGCCCGTATCCTCGCGGCAATACGAAAGGAAAACATG
TATACTTGTATATCAAAAACATGGTCCTAACGCACGAAACTCAATTGTGC
AAAGAAATGCAAAACCTCCTCAGCGGCTATTTTAGTGGGAGTAGGATATA
CATGTATATAAAACTGACGACTAAAACATCACTCGCCGACAGATTACTTT
GA
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