mRNA_S-dermatodea_contig9579.17598.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9579.17598.1
Unique NamemRNA_S-dermatodea_contig9579.17598.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9579.17598.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-14
Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 MLACDDSDAARRSLKVIFMLEAGANPNLADDVGMVALHIASGRDDTDIIDFLLLVQAPATLNHPNAHDVTPLCMAATNGSPDAVSLLLSAGADNRAV 291
            M AC    AA R + V  +L  GA+P    D GM+ALH AS RDDTD+I  LLL +A ATLN    +  TPLC AA+ G  ++V  LLS GA + A+
Sbjct:  120 MQACRLFGAADRYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIG-LLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNAL 215
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BLAST of mRNA_S-dermatodea_contig9579.17598.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-8
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 MLACDDSDAARRSLKVI-FMLEAGANPNLADDVGMVALHIASGRDDTDIIDFLLLVQAPATLNHPNAHDVTPLCMAATNGSPDAVSLLLSAGADN 282
            M+ C         L ++  +L+AGA+  + +++G +A+HIA+GR D  ++  LLL  AP+TLN+   + +TPL  AA  G+   +SLL S GA +
Sbjct:  102 MVTCGTGSVTSTKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVV-ALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASD 195
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BLAST of mRNA_S-dermatodea_contig9579.17598.1 vs. uniprot
Match: A0A2V8M2V0_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8M2V0_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.620e-5
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:   19 SDAARRSLK--VIFMLEAGANPNLADDVGMVALHIASGRDDTDIIDFLLLVQAPATLNHPNAHDVTPLCMAATNGSPDAVSLLLSAGAD 279
            +DAA R  +  V  +L+  A+ N A   GM ALH A+  DD ++   LL   A           +TPL MAA NG+P  + +LL AGAD
Sbjct:   11 ADAAMRGDRAAVRALLKEAADANAAQGDGMTALHWAAFNDDVEMAQMLLYAGANVRAT-TRLGGITPLWMAAQNGNPRTIEVLLKAGAD 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9579.17598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAW5_9PHAE8.600e-1448.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMA9_ECTSI1.750e-836.84Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A2V8M2V0_9BACT2.620e-539.33Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9579contigS-dermatodea_contig9579:2251..2544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3e-07
Seed eggNOG ortholog2880.D8LMA9
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size295
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.7879815-CDS-S-dermatodea_contig9579:2250..25441622925417.7879815-CDS-S-dermatodea_contig9579:2250..2544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9579 2251..2544 +
1694079920.011124-CDS-S-dermatodea_contig9579:2250..25441694079920.011124-CDS-S-dermatodea_contig9579:2250..2544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9579 2251..2544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9579.17598.1prot_S-dermatodea_contig9579.17598.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9579 2251..2544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9579.17598.1

>prot_S-dermatodea_contig9579.17598.1 ID=prot_S-dermatodea_contig9579.17598.1|Name=mRNA_S-dermatodea_contig9579.17598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MLACDDSDAARRSLKVIFMLEAGANPNLADDVGMVALHIASGRDDTDIID
FLLLVQAPATLNHPNAHDVTPLCMAATNGSPDAVSLLLSAGADNRAVL
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mRNA from alignment at S-dermatodea_contig9579:2251..2544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9579.17598.1 ID=mRNA_S-dermatodea_contig9579.17598.1|Name=mRNA_S-dermatodea_contig9579.17598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig9579:2251..2544+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGCCTGCGACGACTCAGATGCAGCACGACGCTCTCTAAAGGTGAT
ATTCATGTTGGAGGCCGGTGCTAACCCTAACCTGGCGGACGACGTTGGTA
TGGTTGCCCTCCACATTGCCTCGGGGCGGGACGATACGGACATTATCGAC
TTCTTGCTCTTGGTGCAGGCGCCCGCAACGCTGAACCATCCCAACGCACA
TGACGTTACACCGCTGTGTATGGCAGCGACAAATGGTTCCCCGGACGCGG
TATCACTCCTTCTCTCGGCGGGGGCCGACAACAGGGCAGTATTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9579:2251..2544+

>mRNA_S-dermatodea_contig9579.17598.1 ID=mRNA_S-dermatodea_contig9579.17598.1|Name=mRNA_S-dermatodea_contig9579.17598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig9579:2251..2544+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGCCTGCGACGACTCAGATGCAGCACGACGCTCTCTAAAGGTGAT
ATTCATGTTGGAGGCCGGTGCTAACCCTAACCTGGCGGACGACGTTGGTA
TGGTTGCCCTCCACATTGCCTCGGGGCGGGACGATACGGACATTATCGAC
TTCTTGCTCTTGGTGCAGGCGCCCGCAACGCTGAACCATCCCAACGCACA
TGACGTTACACCGCTGTGTATGGCAGCGACAAATGGTTCCCCGGACGCGG
TATCACTCCTTCTCTCGGCGGGGGCCGACAACAGGGCAGTATTGATGCTG
GCCTGCGACGACTCAGATGCAGCACGACGCTCTCTAAAGGTGATATTCAT
GTTGGAGGCCGGTGCTAACCCTAACCTGGCGGACGACGTTGGTATGGTTG
CCCTCCACATTGCCTCGGGGCGGGACGATACGGACATTATCGACTTCTTG
CTCTTGGTGCAGGCGCCCGCAACGCTGAACCATCCCAACGCACATGACGT
TACACCGCTGTGTATGGCAGCGACAAATGGTTCCCCGGACGCGGTATCAC
TCCTTCTCTCGGCGGGGGCCGACAACAGGGCAGTATTG
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