mRNA_S-dermatodea_contig95691.17590.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95691.17590.1
Unique NamemRNA_S-dermatodea_contig95691.17590.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.630e-27
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   15 LDDAEVATFADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWS 308
            +D AE  +F +A+H+FPTN  ADD NW RL  LG  IA I+A H++ G  ++ +DRFR L+ +L+L+  A V +N+NVWT+GG+ANGA G++VHM W+
Sbjct: 1387 VDAAERESFDNAVHIFPTNGAADDWNWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEVVHMQWA 1484          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A6S7JG41_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JG41_PARCT)

HSP 1 Score: 69.7 bits (169), Expect = 1.120e-11
Identity = 33/94 (35.11%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   30 VATFADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSV 311
            +  F DA+ L+ +N+Q  + N+++L QL   IA+INA H+    +++S  +   LQ  LY+S+ A VM+  N+W + G+ NG+ G +V + ++V
Sbjct:  464 IDEFEDAVRLYYSNKQGAEYNYNKLKQLNQPIAIINACHSGNQAKHISLQQLFGLQPCLYISKGAKVMLTLNLWPSLGLCNGSTGTVVDIIYAV 557          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A8H5KS06_9HYPO (ATP-dependent DNA helicase n=1 Tax=Fusarium pseudoanthophilum TaxID=48495 RepID=A0A8H5KS06_9HYPO)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-10
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3
Query:    3 MRCELDDAEVATFADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHW 305
            ++ +L + EVATF DA+ +FPTN Q  + N   + QL N +  I A H+ +   +  +    +L   L +   A VM+  N+WTA G+ NGA G +  + W
Sbjct: 1603 VKSKLTEEEVATFDDALRIFPTNLQVREFNRSHMEQLNNAVIQIAATHSNQFGNDAESSVAGNLHKTLPICIGARVMLTENLWTAMGLVNGAVGIVEDLAW 1703          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A6S7GL72_PARCT (ATP-dependent DNA helicase PIF1 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GL72_PARCT)

HSP 1 Score: 62.0 bits (149), Expect = 2.650e-9
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            FADAI L+   +   + N+ +L QLG  +A I A+H+  G    ++D    L A L+LS  A VM+  NVW   G+ NG+ G +  + W  E+
Sbjct:    4 FADAIRLYFDQKSVAEYNYLKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNVWAEVGLCNGSFGTIEQI-WFAEN 95          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: UPI0010699F95 (ATP-dependent DNA helicase PIF1-like isoform X6 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010699F95)

HSP 1 Score: 61.6 bits (148), Expect = 7.520e-9
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F+DAI L+   +   + N+++L ++G  +  I A+H+ RG    ++D    L+A L+LS  A VM+  N+W   G+ NG+ G  V   W  E+
Sbjct:  361 FSDAIRLYFDKKSVAEYNYEKLLEIGQPLVKIQARHSGRGASAATSDEAGGLEAVLFLSTKAEVMLTCNLWAEVGLCNGSFG-TVEQFWFAEN 452          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: UPI00106C135D (ATP-dependent DNA helicase PIF1-like isoform X5 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C135D)

HSP 1 Score: 61.6 bits (148), Expect = 7.680e-9
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F+DAI L+   +   + N+++L ++G  +  I A+H+ RG    ++D    L+A L+LS  A VM+  N+W   G+ NG+ G  V   W  E+
Sbjct:  527 FSDAIRLYFDKKSVAEYNYEKLLEIGQPLVKIQARHSGRGASAATSDEAGGLEAVLFLSTKAEVMLTCNLWAEVGLCNGSFG-TVEQFWFAEN 618          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A6S7HMN7_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HMN7_PARCT)

HSP 1 Score: 61.6 bits (148), Expect = 7.750e-9
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F DAI L+   +   + N+++L QLG  +A I A+H+  G    ++D    L A L+LS  A VM+  N+W   G+ NG+ G +  + W  E+
Sbjct:  651 FTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNLWAEVGLCNGSFGTIEQI-WFAEN 742          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: A0A6S7FUF4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FUF4_PARCT)

HSP 1 Score: 61.6 bits (148), Expect = 7.760e-9
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F DAI L+   +   + N+++L QLG  +A I A+H+  G    ++D    L A L+LS  A VM+  N+W   G+ NG+ G +  + W  E+
Sbjct:  552 FTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNLWAEVGLCNGSFGTIEQI-WFAEN 643          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: UPI00106A333B (uncharacterized protein LOC114544315 isoform X1 n=6 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A333B)

HSP 1 Score: 61.6 bits (148), Expect = 7.830e-9
Identity = 31/93 (33.33%), Postives = 52/93 (55.91%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F+DAI L+   +   + N+++L ++G  +  I A+H+ RG    ++D    L+A L+LS  A VM+  N+W   G+ NG+ G  V   W  E+
Sbjct:  815 FSDAIRLYFDKKSVAEYNYEKLLEIGQPLVKIQARHSGRGASAATSDEAGGLEAVLFLSTKAEVMLTCNLWAEVGLCNGSFG-TVEQFWFAEN 906          
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Match: UPI00106AA32D (ATP-dependent DNA helicase PIF1-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AA32D)

HSP 1 Score: 61.2 bits (147), Expect = 9.190e-9
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 3
Query:   39 FADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTVRGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMHWSVED 317
            F+DAI L+   +   + N+++L ++G  +  I A+H+ RG    ++D    L+A L+LS  A VM+  N+W   G+ NG+ G  +   W  E+
Sbjct:  124 FSDAIRLYFDKKSVAEYNYEKLLEIGQPLVKIQARHSGRGASAATSDEAGGLEAVLFLSTRAEVMLTCNLWAEVGLCNGSFG-TIEQFWFAEN 215          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95691.17590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K692_9PHAE4.630e-2751.02ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6S7JG41_PARCT1.120e-1135.11ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A8H5KS06_9HYPO1.400e-1034.65ATP-dependent DNA helicase n=1 Tax=Fusarium pseudo... [more]
A0A6S7GL72_PARCT2.650e-936.56ATP-dependent DNA helicase PIF1 n=3 Tax=Paramurice... [more]
UPI0010699F957.520e-933.33ATP-dependent DNA helicase PIF1-like isoform X6 n=... [more]
UPI00106C135D7.680e-933.33ATP-dependent DNA helicase PIF1-like isoform X5 n=... [more]
A0A6S7HMN7_PARCT7.750e-934.41ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7FUF4_PARCT7.760e-934.41ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
UPI00106A333B7.830e-933.33uncharacterized protein LOC114544315 isoform X1 n=... [more]
UPI00106AA32D9.190e-932.26ATP-dependent DNA helicase PIF1-like n=2 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95691contigS-dermatodea_contig95691:47..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.9
Seed ortholog evalue4.1e-10
Seed eggNOG ortholog38033.XP_001226244.1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs21AWX@147550,39RYU@33154,3HG3S@35718,3P64X@4751,3QU0F@4890,3UC2G@5139,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.3982966-UTR-S-dermatodea_contig95691:46..481622925417.3982966-UTR-S-dermatodea_contig95691:46..48Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig95691 47..48 +
1694079919.7641158-UTR-S-dermatodea_contig95691:46..481694079919.7641158-UTR-S-dermatodea_contig95691:46..48Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig95691 47..48 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.40866-CDS-S-dermatodea_contig95691:48..3631622925417.40866-CDS-S-dermatodea_contig95691:48..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95691 49..363 +
1694079919.7750819-CDS-S-dermatodea_contig95691:48..3631694079919.7750819-CDS-S-dermatodea_contig95691:48..363Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95691 49..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95691.17590.1prot_S-dermatodea_contig95691.17590.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95691 49..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95691.17590.1

>prot_S-dermatodea_contig95691.17590.1 ID=prot_S-dermatodea_contig95691.17590.1|Name=mRNA_S-dermatodea_contig95691.17590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MRCELDDAEVATFADAIHLFPTNRQADDQNWDRLTQLGNLIALINAQHTV
RGQENVSADRFRSLQAKLYLSRAALVMVNSNVWTAGGVANGAQGDLVHMH
WSVED
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mRNA from alignment at S-dermatodea_contig95691:47..363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95691.17590.1 ID=mRNA_S-dermatodea_contig95691.17590.1|Name=mRNA_S-dermatodea_contig95691.17590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=317bp|location=Sequence derived from alignment at S-dermatodea_contig95691:47..363+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGATGAGGTGCGAGCTTGACGATGCCGAGGTAGCAACGTTCGCTGACGCA ATACACCTCTTCCCCACGAACCGACAGGCGGACGACCAGAATTGGGACCG TTTGACGCAGTTGGGAAACCTCATCGCTCTCATCAACGCACAGCATACCG TTCGAGGCCAAGAGAACGTGAGCGCGGATCGCTTTCGTTCTTTGCAAGCC AAGCTCTACCTGTCACGGGCCGCACTGGTCATGGTGAATTCCAACGTGTG GACGGCCGGGGGGGTCGCGAATGGCGCCCAAGGCGATCTGGTCCACATGC ACTGGAGTGTAGAGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig95691:47..363+

>mRNA_S-dermatodea_contig95691.17590.1 ID=mRNA_S-dermatodea_contig95691.17590.1|Name=mRNA_S-dermatodea_contig95691.17590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig95691:47..363+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGTGCGAGCTTGACGATGCCGAGGTAGCAACGTTCGCTGACGCAAT
ACACCTCTTCCCCACGAACCGACAGGCGGACGACCAGAATTGGGACCGTT
TGACGCAGTTGGGAAACCTCATCGCTCTCATCAACGCACAGCATACCGTT
CGAGGCCAAGAGAACGTGAGCGCGGATCGCTTTCGTTCTTTGCAAGCCAA
GCTCTACCTGTCACGGGCCGCACTGGTCATGGTGAATTCCAACGTGTGGA
CGGCCGGGGGGGTCGCGAATGGCGCCCAAGGCGATCTGGTCCACATGCAC
TGGAGTGTAGAGGACATGAGGTGCGAGCTTGACGATGCCGAGGTAGCAAC
GTTCGCTGACGCAATACACCTCTTCCCCACGAACCGACAGGCGGACGACC
AGAATTGGGACCGTTTGACGCAGTTGGGAAACCTCATCGCTCTCATCAAC
GCACAGCATACCGTTCGAGGCCAAGAGAACGTGAGCGCGGATCGCTTTCG
TTCTTTGCAAGCCAAGCTCTACCTGTCACGGGCCGCACTGGTCATGGTGA
ATTCCAACGTGTGGACGGCCGGGGGGGTCGCGAATGGCGCCCAAGGCGAT
CTGGTCCACATGCACTGGAGTGTAGAGGAC
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