mRNA_S-dermatodea_contig9562.17585.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9562.17585.1
Unique NamemRNA_S-dermatodea_contig9562.17585.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9562.17585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9562contigS-dermatodea_contig9562:8163..8521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.041644-UTR-S-dermatodea_contig9562:8162..81851622925417.041644-UTR-S-dermatodea_contig9562:8162..8185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9562 8163..8185 +
1694079919.5446866-UTR-S-dermatodea_contig9562:8162..81851694079919.5446866-UTR-S-dermatodea_contig9562:8162..8185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9562 8163..8185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.0662422-CDS-S-dermatodea_contig9562:8185..85211622925417.0662422-CDS-S-dermatodea_contig9562:8185..8521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9562 8186..8521 +
1694079919.5554962-CDS-S-dermatodea_contig9562:8185..85211694079919.5554962-CDS-S-dermatodea_contig9562:8185..8521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9562 8186..8521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9562.17585.1prot_S-dermatodea_contig9562.17585.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9562 8186..8521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9562.17585.1

>prot_S-dermatodea_contig9562.17585.1 ID=prot_S-dermatodea_contig9562.17585.1|Name=mRNA_S-dermatodea_contig9562.17585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MRSIWLPRMSNQPMGYRLASQTPGGYLTLAAGVILANHSLAGETTPGISL
RPGIIEKRDLCPFGYGMRFVYNISTPPKKIKIQKHGASVKVPRSQEGRWS
KLHLWRLTCYI*
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mRNA from alignment at S-dermatodea_contig9562:8163..8521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9562.17585.1 ID=mRNA_S-dermatodea_contig9562.17585.1|Name=mRNA_S-dermatodea_contig9562.17585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=359bp|location=Sequence derived from alignment at S-dermatodea_contig9562:8163..8521+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGTATAGTCACGGCCACTGAATGCGCAGCATTTGGTTGCCCCGTATG
TCCAATCAACCCATGGGGTATCGTTTGGCGTCGCAAACACCGGGAGGATA
CCTGACACTAGCAGCTGGTGTCATCCTTGCGAATCACAGCCTGGCCGGCG
AAACCACACCCGGCATATCGCTCCGTCCTGGCATTATTGAGAAGCGTGAT
CTTTGTCCGTTTGGATACGGCATGCGTTTTGTATATAACATAAGTACCCC
CCCTAAAAAAATTAAGATTCAGAAACATGGAGCGAGCGTTAAAGTCCCAC
GTTCTCAAGAGGGAAGATGGTCCAAGCTACACCTGTGGAGGCTCACTTGT
TACATATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9562:8163..8521+

>mRNA_S-dermatodea_contig9562.17585.1 ID=mRNA_S-dermatodea_contig9562.17585.1|Name=mRNA_S-dermatodea_contig9562.17585.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig9562:8163..8521+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCAGCATTTGGTTGCCCCGTATGTCCAATCAACCCATGGGGTATCG
TTTGGCGTCGCAAACACCGGGAGGATACCTGACACTAGCAGCTGGTGTCA
TCCTTGCGAATCACAGCCTGGCCGGCGAAACCACACCCGGCATATCGCTC
CGTCCTGGCATTATTGAGAAGCGTGATCTTTGTCCGTTTGGATACGGCAT
GCGTTTTGTATATAACATAAGTACCCCCCCTAAAAAAATTAAGATTCAGA
AACATGGAGCGAGCGTTAAAGTCCCACGTTCTCAAGAGGGAAGATGGTCC
AAGCTACACCTGTGGAGGCTCACTTGTTACATATAAATGCGCAGCATTTG
GTTGCCCCGTATGTCCAATCAACCCATGGGGTATCGTTTGGCGTCGCAAA
CACCGGGAGGATACCTGACACTAGCAGCTGGTGTCATCCTTGCGAATCAC
AGCCTGGCCGGCGAAACCACACCCGGCATATCGCTCCGTCCTGGCATTAT
TGAGAAGCGTGATCTTTGTCCGTTTGGATACGGCATGCGTTTTGTATATA
ACATAAGTACCCCCCCTAAAAAAATTAAGATTCAGAAACATGGAGCGAGC
GTTAAAGTCCCACGTTCTCAAGAGGGAAGATGGTCCAAGCTACACCTGTG
GAGGCTCACTTGTTACATATAA
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