mRNA_S-dermatodea_contig9548.17569.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9548.17569.1
Unique NamemRNA_S-dermatodea_contig9548.17569.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: W7TFL2_9STRA (DUF1990 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFL2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.970e-22
Identity = 74/225 (32.89%), Postives = 117/225 (52.00%), Query Frame = 2 
Query:  137 PNMRLILKHSDKAIAGYMSEIANRAYNHDHVGITALQPPL--RSTTPPIVIP--KGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRE-RDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLVGEEEGE 796
            P +R+   HS + +  Y+  +  R +NH +VG+T    P   R     + +   +GF+V  +R LLG G + Y       L +  +VN  SW + V     S + + G+ +++ +++Y LLW+ NP R V  H     P     G  +++  ST+ GH++ GEERF V F   R   VW D+ S S+G+  LG++ MP++RP+Q  F  +  R M  LVGE   E
Sbjct:  168 PRLRMGWPHSSRQVQHYLVALRQRKFNHMYVGVTQEFAPYGEREVEDWLRLKGYEGFKVKTQRVLLGKGPETY------ALAKDKIVN-WSWGEEVKWVRFS-EGEHGINVVSQIRTYGLLWTMNPLRKVLCH---EKPWGKRGGAVAAVAVSTLRGHLLEGEERFCVWFEGGRQGDVWFDVLSFSKGAFPLGRLLMPVVRPLQNRFLVDVGRAMQKLVGESVPE 381
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A0G4GX11_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GX11_VITBC)

HSP 1 Score: 95.1 bits (235), Expect = 3.190e-18
Identity = 82/275 (29.82%), Postives = 127/275 (46.18%), Query Frame = 2 
Query:   68 LSSLCVAIAHVADAKFAG--RAAWFPNMRLILKHSDKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGK---YSSIGFSTVLGHMIAGEERFTVEFR---------------------------------ERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLV 778
            L +LC+ ++  A    +G   +A  P +++  +HSD AI   +  I  R  NH  V  T L+ P  S     + P  + VN +R L+G G + Y  A +  L    +   L W  +     D R    G  + T  K+Y +  + NPC   Y   D+   R   +G+   Y+++G+STV GH++AGEERFTV +                                  E+D  VW ++YS SR SGVLG++A   +RP+Q+ F A+   +M + V
Sbjct:    6 LLNLCILVSPHASTAASGVRPSASIPMLKVGQRHSDDAIFDALGTIKGRPPNHPFVRGTLLRYPTSS-----MAPSSYMVNHKRFLIGHGEKAYHFASRALLSWQLINESLEWIRI-----DRR----GEAVTTCAKAYGVS-AINPCLYQYELIDQRAARP--SGREVVYTAVGYSTVKGHLLAGEERFTVAWNQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDG-VWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKMPAYV 262
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: R1E3Q5_EMIHU (DUF1990 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3Q5_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 2.670e-17
Identity = 67/210 (31.90%), Postives = 102/210 (48.57%), Query Frame = 2 
Query:  155 LKHSDKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRA----VQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRL--LWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQM 766
            ++ SD+++  + + IA+RA NHD   I   + P   T       +  RV A R  LG G   ++RA    +   + EG      +W+ ++  DP  R     +  L  + S RL  LW +NPCR V     R         +  S+G+ST+ GH++ GEE+  V +      V  ++ S SRG+G LGK+  P +   Q+ FF EQCR M
Sbjct:   21 VRPSDESLTAFAASIADRAINHD---IHLARAPASGTPA-----RSLRVIAMRVPLGHGRACWRRARRRLLSWEMHEGS-----TWSAVLVEDPPGRS----LVTLAALPSPRLPLLWVSNPCRAVRRRVGR---------RRCSVGYSTLSGHLLEGEEKMDVVWSRETDEVAFEVVSHSRGAGPLGKLLFPALSSTQRRFFREQCRCM 204
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A8J6CD17_DIALT (DUF1990 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD17_DIALT)

HSP 1 Score: 90.1 bits (222), Expect = 5.080e-17
Identity = 57/155 (36.77%), Postives = 86/155 (55.48%), Query Frame = 2 
Query:  284 PKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFA 748
            P   ++  R  ++G G + Y RA +  L +G ++  + WA + F      Q      L TVVK YR +WS NPCR+ +     T          S++ ++T+ GH++ GEE F V   ERD  V + + S+S+GSGVLGK+A+P I PI++AF A
Sbjct:   55 PHHLQLCERAAVIGRGQEAYDRARRA-LAKGELLVGVDWAAVHFL----AQPAVARDLATVVKCYRCVWSLNPCRVTHVALGTTR---------STLAYATLDGHLLEGEEAFDVRL-ERDGAVHVRVTSLSKGSGVLGKLAVPFIIPIRRAFLA 194
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A061RK60_9CHLO (Upf0548 protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK60_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 3.030e-15
Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 2 
Query:  200 ANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETG----------KYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLV 778
            + R +N++HVG T   PPL    P  +  + + V+  R  LG+G  VY+RA +  ++E     +L W  +    P  +  K     + VV    L+W+ NP ++VY             G          +  S     + GH++AGEERF+VE+ + D +VW ++Y+ S+ + +L K   P++R +QK F ++  + M+  V
Sbjct:   22 SRRGFNYEHVGSTYSAPPL----PDKLRDQNWNVDHTRVKLGSGKMVYRRA-KSAVQEWRHF-QLGWTSVEPTTPILKDSK-----VCVVARALLVWTRNPLQIVYVREGNREVLSASAGPDGSPATTRAEVYSFAHGCLGGHLLAGEERFSVEWHKDDDSVWYEIYTFSKPAHLLSKATYPIVRGLQKKFGSDSAKAMMQEV 213
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BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A7V9UWY9_9BACT (DUF1990 domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9UWY9_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 1.310e-14
Identity = 57/213 (26.76%), Postives = 95/213 (44.60%), Query Frame = 2 
Query:  140 NMRLILKHSDKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLV 778
            NM  + + SD+ I  +++   +  +++  VG +  +           IP G+ +N  R  LG G   + RA      +   + RL W  L   +P     +    ++ V+ ++R   S NPCR++Y      L       +     F T+ GH   GEERF VE+R  D +VW ++ S +R   +L K+  P +   Q+ F  +  R ML  V
Sbjct:    3 NMFTLFEPSDEQIENFVAAQRDLPFSYREVGASQSR-----------IPAGYPINHHRIQLGIGADAFARAKAA--LQSWTMYRLEWTHLYPINPPIAVGE----VVCVIANHRFCRSLNPCRIIYV-----LEEAGGAAERYGFAFGTLPGHSEEGEERFIVEWRRDDDSVWYEILSFARPHHILAKIGFPFVGLFQQKFGIDSKRAMLGAV 193
[Close]
BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A521XCS0_9PROT (DUF1990 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XCS0_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 2.210e-14
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 2 
Query:  167 DKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFS--TVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQM 766
            D AI   ++++++  Y++  VG  AL+ P        V P G+  +  R LLG G   Y+RA +  LR   + + L W  L    P +    +G T + +   +  +W+ N CR+VY   D+        G     GF+  T+ GH+++GEERFTVE+   D +VW  + + SR   +L ++  P++R +QK F  E    M
Sbjct:    9 DGAICERLAQLSSAPYSYAEVG--ALENP--------VFPIGYLADRHRALLGRGAAGYERA-KAALRRWEMFH-LGWVRLY---PSAPPIAAG-TSIGISARFLGVWNLNFCRIVYTVEDK--------GDVERFGFALGTLPGHILSGEERFTVEWHRADDSVWYHVCAFSRPDQLLSRLGYPIVRQLQKRFAKESHAAM 186
[Close]
BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A517VGW0_9PLAN (DUF1990 domain-containing protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VGW0_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 7.360e-14
Identity = 66/222 (29.73%), Postives = 106/222 (47.75%), Query Frame = 2 
Query:  143 MRLILKHSDKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLVGEEEGEAPNR 808
            M L+ + S + I  +++  A   + +  +G T      RS TPP     GF+V+  R  LG G  VY++A +    +     RL+W  L      +   + G T+  + ++  L W  N  R+VY      +  E E  +  +  + T+  H   GEERF VE+R  D +VW DLY+ SR   +L K+A P +R  Q+ F  +  + M + VG ++    NR
Sbjct:    1 MFLLQQPSAEQINEFIAIQAQLEFTYSSLGAT------RSATPP----DGFQVDHNRICLGQGRAVYEQAKRA--LQDWQHFRLNWVSL---HRPAALPEPGQTVAILAQTLGL-WVLNASRVVY------VLEETEPVQRYAFAYGTLPEHAECGEERFQVEWRADDDSVWYDLYAFSRPQQLLSKIAYPYVRRKQQEFARDSLQAMQAAVGIDQNGLANR 200
[Close]
BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A6C6T8_9PLAN (DUF1990 domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6C6T8_9PLAN)

HSP 1 Score: 79.3 bits (194), Expect = 2.030e-13
Identity = 65/216 (30.09%), Postives = 102/216 (47.22%), Query Frame = 2 
Query:  143 MRLILKHSDKAIAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLVGEEE 790
            M L+ +   K I  ++   A   + +  +G T      RS  PP      F+V+  R  LG G  VY++A +    +     RL+W  L    PD+   + G T+  +  +  L W  N  R+VY      +  E E  +  +  + T+  H   GEERF VE+R  D +VW DLY+ SR   +L K+A P +R  QK F  +  + M + VG+++
Sbjct:    1 MFLLQQPKAKQIDDFIEVQAQLEFTYSSIGAT------RSPAPP----DSFQVDHNRICLGQGRAVYEQAKRA--LQDWQHFRLNWVSL--HHPDALP-EPGQTVAILAHALGL-WVLNASRVVY------VLEETEPVQRYAFAYGTLPEHAECGEERFQVEWRADDDSVWYDLYAFSRPQQLLSKIAYPYVRRKQKQFARDSLQAMKAAVGKDK 194
[Close]
BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Match: A0A7S3WZF0_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WZF0_9SPIT)

HSP 1 Score: 78.6 bits (192), Expect = 6.220e-13
Identity = 65/214 (30.37%), Postives = 98/214 (45.79%), Query Frame = 2 
Query:  146 RLILKHSDKA-IAGYMSEIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVYKRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYR--LLWSANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRERDSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLV 778
            RL  +   K  I    + ++NR YNHD VGI AL         P  + +  RV      LG G + +  A +  L E  + +  SW+ +       R     +  L  +   R  LLW  NPCR V           +  G +  +G++T+ GH+IAGEE  +V +R+    V  ++ S SRG+ + G++    +   Q  FF EQCR M +LV
Sbjct:   22 RLYFRRPSKVQIDAMAASLSNRQYNHDFVGIGALP----EDQEPSHVARRLRVIRHTVNLGRGNRSWDVA-RAALLEWRMHDGSSWSAI------HRDRSGSVVTLAALPHPRIPLLWVLNPCREV--------DYSLNAGDHCCVGYATLKGHLIAGEESMSV-YRKASGEVCFEVLSRSRGANLFGRLIFLGLAKTQDRFFREQCRCMQALV 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9548.17569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TFL2_9STRA1.970e-2232.89DUF1990 domain-containing protein n=3 Tax=Monodops... [more]
A0A0G4GX11_VITBC3.190e-1829.82Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
R1E3Q5_EMIHU2.670e-1731.90DUF1990 domain-containing protein n=2 Tax=Emiliani... [more]
A0A8J6CD17_DIALT5.080e-1736.77DUF1990 domain-containing protein n=1 Tax=Diacrone... [more]
A0A061RK60_9CHLO3.030e-1528.57Upf0548 protein n=1 Tax=Tetraselmis sp. GSL018 Tax... [more]
A0A7V9UWY9_9BACT1.310e-1426.76DUF1990 domain-containing protein n=1 Tax=Pyrinomo... [more]
A0A521XCS0_9PROT2.210e-1430.69DUF1990 domain-containing protein n=1 Tax=Betaprot... [more]
A0A517VGW0_9PLAN7.360e-1429.73DUF1990 domain-containing protein n=1 Tax=Gimesia ... [more]
A6C6T8_9PLAN2.030e-1330.09DUF1990 domain-containing protein n=6 Tax=Planctom... [more]
A0A7S3WZF0_9SPIT6.220e-1330.37Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9548contigS-dermatodea_contig9548:2468..8164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue2.5e-16
Seed eggNOG ortholog2903.EOD17666
EggNOG free text desc.Domain of unknown function (DUF1990)
EggNOG OGs2E8GY@1,2SEZ2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionDomain of unknown function DUF1990
Ec32 orthologEc-12_008030.1
Exons6
Model size1559
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9548.17569.1prot_S-dermatodea_contig9548.17569.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9548 3207..8121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.6629117-UTR-S-dermatodea_contig9548:2467..32061622925415.6629117-UTR-S-dermatodea_contig9548:2467..3206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9548 2468..3206 -
1694079918.573392-UTR-S-dermatodea_contig9548:2467..32061694079918.573392-UTR-S-dermatodea_contig9548:2467..3206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9548 2468..3206 -
1622925415.738924-UTR-S-dermatodea_contig9548:8121..81641622925415.738924-UTR-S-dermatodea_contig9548:8121..8164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9548 8122..8164 -
1694079918.6538448-UTR-S-dermatodea_contig9548:8121..81641694079918.6538448-UTR-S-dermatodea_contig9548:8121..8164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9548 8122..8164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.677988-CDS-S-dermatodea_contig9548:3206..33231622925415.677988-CDS-S-dermatodea_contig9548:3206..3323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 3207..3323 -
1694079918.5840323-CDS-S-dermatodea_contig9548:3206..33231694079918.5840323-CDS-S-dermatodea_contig9548:3206..3323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 3207..3323 -
1622925415.6877415-CDS-S-dermatodea_contig9548:3612..37651622925415.6877415-CDS-S-dermatodea_contig9548:3612..3765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 3613..3765 -
1694079918.5972333-CDS-S-dermatodea_contig9548:3612..37651694079918.5972333-CDS-S-dermatodea_contig9548:3612..3765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 3613..3765 -
1622925415.6993334-CDS-S-dermatodea_contig9548:4285..44101622925415.6993334-CDS-S-dermatodea_contig9548:4285..4410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 4286..4410 -
1694079918.6100981-CDS-S-dermatodea_contig9548:4285..44101694079918.6100981-CDS-S-dermatodea_contig9548:4285..4410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 4286..4410 -
1622925415.7105384-CDS-S-dermatodea_contig9548:4784..48721622925415.7105384-CDS-S-dermatodea_contig9548:4784..4872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 4785..4872 -
1694079918.6214333-CDS-S-dermatodea_contig9548:4784..48721694079918.6214333-CDS-S-dermatodea_contig9548:4784..4872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 4785..4872 -
1622925415.7199602-CDS-S-dermatodea_contig9548:5156..53111622925415.7199602-CDS-S-dermatodea_contig9548:5156..5311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 5157..5311 -
1694079918.630736-CDS-S-dermatodea_contig9548:5156..53111694079918.630736-CDS-S-dermatodea_contig9548:5156..5311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 5157..5311 -
1622925415.7293692-CDS-S-dermatodea_contig9548:7982..81211622925415.7293692-CDS-S-dermatodea_contig9548:7982..8121Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 7983..8121 -
1694079918.6424074-CDS-S-dermatodea_contig9548:7982..81211694079918.6424074-CDS-S-dermatodea_contig9548:7982..8121Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9548 7983..8121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9548.17569.1

>prot_S-dermatodea_contig9548.17569.1 ID=prot_S-dermatodea_contig9548.17569.1|Name=mRNA_S-dermatodea_contig9548.17569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
MWVSLWLLLSSLCVAIAHVADAKFAGRAAWFPNMRLILKHSDKAIAGYMS
EIANRAYNHDHVGITALQPPLRSTTPPIVIPKGFRVNARRQLLGTGLQVY
KRAVQVGLREGGVVNRLSWADLVFADPDSRQWKSGMTLLTVVKSYRLLWS
ANPCRLVYAHWDRTLPREMETGKYSSIGFSTVLGHMIAGEERFTVEFRER
DSTVWLDLYSVSRGSGVLGKVAMPLIRPIQKAFFAEQCRQMLSLVGEEEG
EAPNRPRR*
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mRNA from alignment at S-dermatodea_contig9548:2468..8164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9548.17569.1 ID=mRNA_S-dermatodea_contig9548.17569.1|Name=mRNA_S-dermatodea_contig9548.17569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5697bp|location=Sequence derived from alignment at S-dermatodea_contig9548:2468..8164- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAGGGTGGTTGCTGGAGTGCATCCGAATTGGTTGGGAGCTGATGTGGG
TGTCTCTATGGCTGCTGCTAAGCTCTCTATGCGTGGCAATAGCCCATGTG
GCTGATGCCAAATTCGCTGGGCGTGCGGCGTGGTTCCCGAACATGCGTCT
GATCTTGAAGCACTCCGACAAAGCGATTGCAGGTAGGTGCTCTGTTGTAA
ACAACGTGACTACAGTATCTTCATCAACATTGACAACACGACCTACTCTA
CATGACTCAGACGGCGACTGTAATGGTACAGCAGGAGCGGGTCACTCGAC
AAATAACTCTCCCGAGCGGGTGTTTGCATGTATGCGTGGACGCTATGATT
TAAAAACGGCCGCGAGTGATGTGGTGATCATGTACATCAGTCGTGCGAAG
GTATGATACGTTGTGGGAGCAGCGGCAAGCAGTCGAAACAGACAGTATGA
AATATGTATGCTACACCTGCAGGAGCAGTTGGAGATCACGAGAAATCCGC
TTGGTTACACCGTCAACGCCTTCCTCACATCGGCGAGTCGCCGTGGACGA
AGGATTTGCCAAGCACGTAAAGGCACGCCTTCAACCGACCCATCTTCCTA
ACCACTCACTGCAGTTGTAACATATAGGTGTGTTGTCACATTCAAGGCAA
AAGTAGGGCACGTATTTTCCTATTATAGGCACACTGTTTCAACTTTCAAC
GAGTACGTGCAGCCGTTGTCCCGTTGTTGTGGTTGTACAACTACACAGTA
TTAATACAGTAGCTACACTAGTGCGGTAAAATGCTTGCGCGCGCGGGCAG
CCCCCCCTGTCCGCCCCACCCGTCCGCCCCACCCTTCGTAAGTATATGAT
GAAGAACGAATGGCGCACATGGATCAATGTTTCCAAGAATTGCCACCTAC
CATGTGTTCGTCTATGACACTGGAGATGCCGTGTGTAGGCGCGACGGCAA
CAGGCAAGCGTAAGGAGGAAATACCCGTCGAACCACGATTTGATCCAGCC
GATAGAGGGAAAGCGCACGGTGCCCTGTGTACTGTAGATGGCGATGTGAC
GAGAAGAAAATAAGCCACGAGGGAACTAAATCTAGGGGAGGTCGCCACGG
ACACGTTTCCAAACGCGCAAGCTATTCTACGCGATGCTATGATATTAATG
GCGAAATCACATACACGCACTGATCGTACCCGGTGGCGACGCAACACGAG
CGGTTCGGAAACTATTTGTACTGGTCACCTCATGTTGCGAGAGGGCACAC
GGGTATACAGTGCCACGATCATGATGAGTAGATCAAGCCAAACGCACGGC
AAACAACCAAATTCTATTTTACGAAGCGGGAGAGCGACCATGTTTGCAAT
GGAGGTGTCTGGCGAGACGGCTAGAGCCATTGATAGATTTGATTGATCGA
TTGGTTATCACACTTACAACCGACCGGCCCACCAACGGTTGTCGATCCCG
CTCGTGGCCAGATGATAAAAATCGAGGGATGAAAAAAAACTAAGTAATTA
TGTACGTTTTCCTGAGAGCACGCTTGCCCCTTGGCGTGTCCCTTATACCC
TACACCGCTGGGTTTGGCCACCCGCTTCCGTTAGAAAGCTTAGCTTGATG
CCGCGACCCGCCGAAAACGAGACGCTTAGAGCTTTCGTGTTCGATGGCTC
TCGTAACAGCGAGGTCTGCTGGCCAAAAACATGTCCAGATCAAGGCTTCG
TCGGGCGCTGTTTCAGCGTTGGAAAGGGGTAAAAAGCGGCAAAGAGAGTG
TGCTAAGTCACTTTCACTTCTCCCGTCACGGCCCGAAGCAAGGGATTGGA
CAAATGTCGCCGGATATCAGAACTTTAAAATGGTTTCCCCCTGTTTCACG
CGCTACCACGGACGTTGTGCGTAAGTAAACTGCCATAGCTTTACTCGTAG
GCATACTGTGTTTCTTCGAATATCGGGGACAGTTCCGAGGAACCATAGAA
ACCTTCCAGAGCCTGTACCCTGCAGTATTCCTGTCCATCAAGCTCGTTAC
CACAACCATATGTTCAGAGCAAGCGCTCTAGCTTAGTTTTTCTACTCTGC
CGACCCATCCGTGTTTGACGAAAGTCGAAAACATTTTAGGGTTGTCTAAA
GTCTCTGCTGGAGACTGCGTCAGCTGGACGCGCTCACGAAGAGTGTATTT
CCCCGTATTACTATAGTATTAAATGTGACGGATGTGTCGGGTTAGGAGGT
GTTGTATACAAGCTTACCTTAAAAGGCTACACGGCGGTTGTTCTCGCAGG
ATTGCGAAGGAGATTTGGTGTATGCCAACAGCTGCTACCATAGCCCGGCG
CGATCCTACTAAATTATTACGTTTTAGAGTGTGGTAGAATTTCCTATATA
TAAACCCTAGCCCCACCGCTAACCCCAACCCCAACGCACGAGTGCGGTGT
GCGTTCGAGAGTGGGTACAAGTGTGCGTTCAAGCGTGGGCAAAGAACTGC
TCAAAATATAGGAAAACAAAATATTCTCCAAATCCTGTATGTTAGCTTGG
GGGGCGTCCATGTACTATCACTACTGCCGGCGCGCGTCTGATCTTTCTCT
ATCTGTCTTTCGCATTGCGGCTACAGCAGTAGTATATACGCCTGTCTGCC
GTGGCCACGGCAACCCTGTTTGACAGAAGCTTTCGCCACGGCAGACGCCA
CGGCTCCGGCTTTTTGTCGTTGACCTATTTTGTTTTTACACGCTTGATCG
AGTGTCCCAAGTCTTTCTTGTTGGTTCCAACAGGTACCAGCTCATGTGTG
TCTATTGTCGCGTTGCAGCCCAACCGCAGAGGTGCCCGAGCCAGCAAGGC
ATGCCAAGTTGCCGTTGATATATACCACTCTGCCTCTCCACGTGGCGCCC
CAGGGTACATGTCAGAGATTGCTAACAGAGCTTACAACCACGACCACGTG
GGAATCACGGCTCTTCAACCACCGCTGCGCTCCACGACCCCGCCTATCGT
CATCCCCAAGGGCTTCAGGGTCAACGCGCGGCGGCAGCTGTTGGGCACCG
GGTTGCAGGCGAGAGGCCAAGCAGTAGTTGGAAAAGGCCATGCCAATGGT
ACTTCGTCTCATTTGTCGGAGCATTATCCGGCGGGCTTGGAAAATATCTT
GACGCTCTCATAGCCATATACGCTGCGCTGGAGATCCTGATGTTGCCATT
TCCCCGCCAAGGCTCCTTCGTGATCATTTCCCCGCGGAAACCCTGCCCGG
CTAGGCAGCTGCGCGCTGCGCATTTGCTGTACTCGGAGGGTAACGGCCAA
ACCCCTCCGTATCGCGTTTTGCACCCTTTGTTGCTTTTCCAGGTCTACAA
GCGAGCGGTGCAAGTGGGACTAAGGGAAGGGGGGGTAGTCAATCGTCTTT
CTTGGGCCGACCTAGTCTTCGCCGATCCAGGTGGGCTGTAGCTTAGGTTA
TTGCTCACATGGGCCAGGCGGACACTGATGAGAGATATACTCAGTAAACA
GAGGTAGGAACAAGGGTTGTCGAACAACACAGGTTGTACGCGTTTGCCCA
GTAACGATTTGGAAATTTGTAAGATGTGCATGCGTAGCTTGAAGAGGGGG
GGGTCCTGATGTAACAAGCGCGCTTGCTTAACGCCATCACGAAATAACCA
TGTGTCTCGAATCGGTCGGTGGTGTTGCTATGGAATGCATTTCCCGATAT
TAAGGTTTACCGGCTGAACGATGGTCGGTTGAACTCGAGACATTGACGCG
TGTCAAACGTTTTCGCATGCTCGGTTGCATGTGCTTGCTCTTGTGCTATG
GCAGACTCCAGGCAATGGAAGTCAGGAATGACTTTGCTCACCGTGGTGAA
GTCCTACCGCCTGCTGTGGTCGGCAAACCCCTGCAGGCTCGTCTACGCCC
ATTGGGACAGGACGCTTCCCCGTGAAATGGTGAGCAGCTGGAGCACAAGC
AATTATCACGTCGGAAAACTAATCCGGGACGGATGACTTTTTCCGGCGGA
CACGTAAACGGCACCCGCCCACGTCTCGAAAACGCTAAATAGGGTATACC
CGGTACCTGCGCGACCGCCGTGGTCACCGGGTATGGTATTTCAACGATGT
CTAACATACCTACCGCTTGAACCGATGCTGGGTCGGTAGGCCATAAAAAA
ATAGAGGTTGGACGGCAAAAAGTCGAGTTTGATCCACTTAAAACCTCTTG
GGACGCACAAATAGCTGTGTTTGACATATAAGAGGGTAGGTTAGACCTTA
CTCGTCGCCGTGAGTACGGGAGGGTGTCCAAGTACATTGAATGCAATCTA
GCCGACCGCAGTACCGTTGCTATTTGTCATGTTTCGCAGTTGTCTCTTAG
CAACAAGAACACCTACAGTAAGAAAAACGATCGGCAGCTTTTGTCTCGTT
TACAAAACGTTAGGCTATTGTTTTACTTTTTTCCTGTGCCGCTTCTCAGG
AAACGGGCAAGTACTCTAGCATCGGCTTCTCTACGGTGTTAGGGCATATG
ATAGCGGGAGAAGAACGGTTTACCGTCGAATTTCGAGAGCGAGACTCGAC
CGTCTGGTTGGACCTGTACTCGGTTTCGAGGGGCTCTGGCGTTCTTGGCA
AGGTGAGCGGTGAAATGGAAGCTTCTCCGCGACTTCATCCAGCGCGGGTA
AAGTTTCTACGTCCAAGCACGAAATAACAAGTTAGTTGATTGGTTGGAGG
GACTCGCCCACCTCTTTCACATCCGTTATTCGACTGCACTACTGTACTGG
CCATGTGTTGCAACGCGCGTGTTTGCGCGGGACACAACACTGCCACACAA
CAACCGCGTGTGTGCGAATGAACCCCATACCCTGCCCATCCTAACTCTCC
TGGGTTGTCGTCGTCCGTTGTGTGGTTTCGTCCGCAAACAGGTGGCCATG
CCGCTCATTCGACCCATACAGAAAGCTTTTTTCGCCGAGCAATGCCGGCA
GATGCTCAGCCTGGTGGGGGAGGAGGAGGGAGAAGCTCCCAATAGACCGA
GACGTTGAACCACGGAAATTGCAAATGCTACAGTGGCGCACAGGGCGACG
TACGTGCGCTGTGCTGGAAATACTCGGCGTTAGAGGGAGTCGGTAGGTCT
AACGTTGGCACCGTTCATCTCTGCCGTTGTGGACACAGCGCTAGGCTTTC
GGTGTTCCTGGAACGCGCTATGCGGAAGATGTGTATTGTTCCAAGCGCGC
GTGCGCGGTTTCCAGATGATGGCAATGAGCCCGGCATTGCCGTTACTTTA
GAACGTCGATGTTATAGTTGTTGCGTCCAGCCACAAACGTCTTTGCGTTG
CTATGTACCTGAGGTACTACGTACTGGTTTTGTTCGTTCTCGCCGTGAAT
ATGCATCCGTCGTGGACACTGGTGGCTACGCTCTGCAAGATCGAAACTAT
TTTCACGGCCCATGCTGTTGCGCATGGCCAAGTGTTTCCTCGCTGTTCTG
TGCGGATTTGGCCAACATCCATTGAACGATGGCAGAATGGGGTTCGTCGT
TTGGACCAAGGACGTTCGCGAGTGGGCTCAATATATTTTGTACAGGTGCG
CAGCGTGTCCTGCTTGTAGAGCACTGTATTTCCTTCCTTTTTGAATTACG
TAAAACTCATTGCGAAACACCCGCGTTCGCTGTTCAACTACGGACATTTT
GCGTTTTCGCGGTGCAATTTACTGACGTGATACACACCCCGATCACTCCG
AAGATTGACAAGTCGAGATACAGAAAGAGGCCAAGTGGTTATGTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9548:2468..8164-

>mRNA_S-dermatodea_contig9548.17569.1 ID=mRNA_S-dermatodea_contig9548.17569.1|Name=mRNA_S-dermatodea_contig9548.17569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig9548:2468..8164- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGTGTCTCTATGGCTGCTGCTAAGCTCTCTATGCGTGGCAATAGC
CCATGTGGCTGATGCCAAATTCGCTGGGCGTGCGGCGTGGTTCCCGAACA
TGCGTCTGATCTTGAAGCACTCCGACAAAGCGATTGCAGATGTGGGTGTC
TCTATGGCTGCTGCTAAGCTCTCTATGCGTGGCAATAGCCCATGTGGCTG
ATGCCAAATTCGCTGGGCGTGCGGCGTGGTTCCCGAACATGCGTCTGATC
TTGAAGCACTCCGACAAAGCGATTGCAGGGTACATGTCAGAGATTGCTAA
CAGAGCTTACAACCACGACCACGTGGGAATCACGGCTCTTCAACCACCGC
TGCGCTCCACGACCCCGCCTATCGTCATCCCCAAGGGCTTCAGGGTCAAC
GCGCGGCGGCAGCTGTTGGGCACCGGGTTGCAGGGTACATGTCAGAGATT
GCTAACAGAGCTTACAACCACGACCACGTGGGAATCACGGCTCTTCAACC
ACCGCTGCGCTCCACGACCCCGCCTATCGTCATCCCCAAGGGCTTCAGGG
TCAACGCGCGGCGGCAGCTGTTGGGCACCGGGTTGCAGGTCTACAAGCGA
GCGGTGCAAGTGGGACTAAGGGAAGGGGGGGTAGTCAATCGTCTTTCTTG
GGCCGACCTAGTCTTCGCCGATCCAGGTCTACAAGCGAGCGGTGCAAGTG
GGACTAAGGGAAGGGGGGGTAGTCAATCGTCTTTCTTGGGCCGACCTAGT
CTTCGCCGATCCAGACTCCAGGCAATGGAAGTCAGGAATGACTTTGCTCA
CCGTGGTGAAGTCCTACCGCCTGCTGTGGTCGGCAAACCCCTGCAGGCTC
GTCTACGCCCATTGGGACAGGACGCTTCCCCGTGAAATGACTCCAGGCAA
TGGAAGTCAGGAATGACTTTGCTCACCGTGGTGAAGTCCTACCGCCTGCT
GTGGTCGGCAAACCCCTGCAGGCTCGTCTACGCCCATTGGGACAGGACGC
TTCCCCGTGAAATGGAAACGGGCAAGTACTCTAGCATCGGCTTCTCTACG
GTGTTAGGGCATATGATAGCGGGAGAAGAACGGTTTACCGTCGAATTTCG
AGAGCGAGACTCGACCGTCTGGTTGGACCTGTACTCGGTTTCGAGGGGCT
CTGGCGTTCTTGGCAAGGAAACGGGCAAGTACTCTAGCATCGGCTTCTCT
ACGGTGTTAGGGCATATGATAGCGGGAGAAGAACGGTTTACCGTCGAATT
TCGAGAGCGAGACTCGACCGTCTGGTTGGACCTGTACTCGGTTTCGAGGG
GCTCTGGCGTTCTTGGCAAGGTGGCCATGCCGCTCATTCGACCCATACAG
AAAGCTTTTTTCGCCGAGCAATGCCGGCAGATGCTCAGCCTGGTGGGGGA
GGAGGAGGGAGAAGCTCCCAATAGACCGAGACGTTGAGTGGCCATGCCGC
TCATTCGACCCATACAGAAAGCTTTTTTCGCCGAGCAATGCCGGCAGATG
CTCAGCCTGGTGGGGGAGGAGGAGGGAGAAGCTCCCAATAGACCGAGACG
TTGA
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