mRNA_S-dermatodea_contig95456.17568.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95456.17568.1
Unique NamemRNA_S-dermatodea_contig95456.17568.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: D8LQV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV3_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 6.610e-33
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVPITEDG IGSKLVGLCTKRDLDLVDERHEPLSEHMTPVD L+LGREGCSL+EAQEIIKVSKKG
Sbjct:  145 GVPITEDGSIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDDLILGREGCSLEEAQEIIKVSKKG 209
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A835ZCF6_9STRA (IMP dehydrogenase/GMP reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.590e-17
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVPIT+DG++GSKLVGL TKRD DLV++R   LS +MTP + L++G++G SL+EAQ ++K  KKG
Sbjct:  148 GVPITQDGKMGSKLVGLITKRDTDLVEDRGASLSTYMTPAEGLIVGKKGISLEEAQTLLKECKKG 212
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A835ZPD2_9STRA (IMP dehydrogenase/GMP reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPD2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.980e-17
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVPITEDG++GS+LVGL TKRD DLV++R   LS +MTP D L++G +G SL+ AQ ++K  KKG
Sbjct:  147 GVPITEDGKMGSRLVGLITKRDTDLVEDRTASLSTYMTPADSLIVGSKGISLEAAQNLLKECKKG 211
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: R7U013_CAPTE (IMP dehydrogenase n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U013_CAPTE)

HSP 1 Score: 74.3 bits (181), Expect = 4.860e-14
Identity = 33/67 (49.25%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLV--DERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            G+PITE+G++G KL+GL T+RD+D +  D+ H P+SE MTP++ L++   G +L+EA +I++ SKKG
Sbjct:  170 GIPITENGKMGGKLIGLVTQRDIDFIAQDQMHIPISEVMTPLEDLIVAPHGVTLKEANQILQKSKKG 236
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A1X7UIN3_AMPQE (Inosine-5'-monophosphate dehydrogenase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UIN3_AMPQE)

HSP 1 Score: 74.3 bits (181), Expect = 5.370e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLV--DERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            G+PIT  GR+G KLVG+ T RD+D +  D R  PL + MTP D+LV+ + GC+L+EA  I++ SKKG
Sbjct:  141 GIPITATGRLGGKLVGIITSRDVDFLSSDARDRPLGDLMTPRDELVVAQHGCTLEEANHILQTSKKG 207
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A7V3I3V7_9BACT (CBS domain-containing protein (Fragment) n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3I3V7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.720e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            G+PITEDG +GSKLVG+ T RD+D   +R  PLSE MT    LV  REG +L EA +I+K SKKG
Sbjct:  134 GIPITEDGTLGSKLVGIVTNRDIDFEKDRSRPLSEVMTT--DLVTAREGVTLHEANQILKKSKKG 196
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: G4YIT1_PHYSP (Inosine-5'-monophosphate dehydrogenase n=12 Tax=Phytophthora TaxID=4783 RepID=G4YIT1_PHYSP)

HSP 1 Score: 73.9 bits (180), Expect = 7.310e-14
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVPITEDG +  KLVGL T RD+D +++R  PLS  M P+++LV+G+   SL+EA +++K +KKG
Sbjct:  133 GVPITEDGSVKGKLVGLVTSRDVDFLEDRSVPLSSIMVPLEQLVVGKYPISLEEANKVLKEAKKG 197
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A6A3NW49_9STRA (Inosine-5'-monophosphate dehydrogenase n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NW49_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVPITEDG +  KLVGL T RD+D +++R  PLS  M P+++LV+G+   SL+EA +++K +KKG
Sbjct:  636 GVPITEDGSVKGKLVGLVTSRDVDFLEDRSVPLSTIMVPLEQLVVGKYPISLEEANKVLKEAKKG 700
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: M2XSW7_GALSU (Inosine-5'-monophosphate dehydrogenase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSW7_GALSU)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-13
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            G+PITEDGR+GS+L+G+ TKRD++ V +   PLSE MT   +LV   +GC+L +A E +KVSKKG
Sbjct:  152 GIPITEDGRMGSRLLGIVTKRDVEFVKDWTTPLSEVMT--SELVTAPQGCTLDQANETLKVSKKG 214
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BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Match: A0A6V1RUF0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUF0_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.870e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGCSLQEAQEIIKVSKKG 195
            GVP+T DGR+G++L+G+ TKRD D + +R +PL+  MTPV +L   +  C L+ A  I+K SKKG
Sbjct:  143 GVPVTADGRVGARLLGMVTKRDTDFLTDRSQPLTAVMTPVAELTCAQHPCDLESANRILKESKKG 207
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95456.17568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV3_ECTSI6.610e-3393.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCF6_9STRA1.590e-1760.00IMP dehydrogenase/GMP reductase (Fragment) n=1 Tax... [more]
A0A835ZPD2_9STRA2.980e-1760.00IMP dehydrogenase/GMP reductase n=1 Tax=Tribonema ... [more]
R7U013_CAPTE4.860e-1449.25IMP dehydrogenase n=1 Tax=Capitella teleta TaxID=2... [more]
A0A1X7UIN3_AMPQE5.370e-1452.24Inosine-5'-monophosphate dehydrogenase n=1 Tax=Amp... [more]
A0A7V3I3V7_9BACT5.720e-1458.46CBS domain-containing protein (Fragment) n=1 Tax=A... [more]
G4YIT1_PHYSP7.310e-1452.31Inosine-5'-monophosphate dehydrogenase n=12 Tax=Ph... [more]
A0A6A3NW49_9STRA1.020e-1352.31Inosine-5'-monophosphate dehydrogenase n=1 Tax=Phy... [more]
M2XSW7_GALSU1.370e-1355.38Inosine-5'-monophosphate dehydrogenase n=1 Tax=Gal... [more]
A0A6V1RUF0_HETAK1.870e-1349.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95456contigS-dermatodea_contig95456:274..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3e-27
Seed eggNOG ortholog2880.D8LQV3
Preferred nameIMPDH2
KEGG rclassRC00143,RC02207
KEGG koko:K00088
KEGG ReactionR01130,R08240
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
KEGG ModuleM00050
GOsGO:0000166,GO:0000323,GO:0000785,GO:0000902,GO:0000904,GO:0001654,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0003938,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007623,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0022008,GO:0022607,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0030447,GO:0031175,GO:0031347,GO:0031349,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032990,GO:0033554,GO:0034097,GO:0034404,GO:0034641,GO:0034654,GO:0034774,GO:0035578,GO:0035690,GO:0035821,GO:0036094,GO:0036170,GO:0036180,GO:0036230,GO:0040007,GO:0040011,GO:0042119,GO:0042221,GO:0042278,GO:0042330,GO:0042451,GO:0042455,GO:0042493,GO:0042582,GO:0042594,GO:0043010,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043473,GO:0043933,GO:0044003,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0046903,GO:0048066,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0060041,GO:0060205,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070661,GO:0070670,GO:0070887,GO:0071310,GO:0071345,GO:0071353,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0075136,GO:0080134,GO:0090407,GO:0097159,GO:0097485,GO:0097708,GO:0099503,GO:0101002,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1904813
EggNOG free text desc.IMP dehydrogenase activity
EggNOG OGsCOG0516@1,KOG2550@2759
EC1.1.1.205
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInosine-5'-monophosphate dehydrogenase
Ec32 orthologEc-24_002410.1
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.6276684-CDS-S-dermatodea_contig95456:273..4681622925415.6276684-CDS-S-dermatodea_contig95456:273..468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95456 274..468 +
1694079918.5540342-CDS-S-dermatodea_contig95456:273..4681694079918.5540342-CDS-S-dermatodea_contig95456:273..468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95456 274..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95456.17568.1prot_S-dermatodea_contig95456.17568.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95456 274..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95456.17568.1

>prot_S-dermatodea_contig95456.17568.1 ID=prot_S-dermatodea_contig95456.17568.1|Name=mRNA_S-dermatodea_contig95456.17568.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
GVPITEDGRIGSKLVGLCTKRDLDLVDERHEPLSEHMTPVDKLVLGREGC
SLQEAQEIIKVSKKG
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mRNA from alignment at S-dermatodea_contig95456:274..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95456.17568.1 ID=mRNA_S-dermatodea_contig95456.17568.1|Name=mRNA_S-dermatodea_contig95456.17568.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig95456:274..468+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGCCCATCACCGAGGACGGCCGCATAGGATCAAAGCTTGTCGGGCT
GTGCACGAAGCGAGATCTTGACCTTGTCGACGAGAGGCACGAGCCGTTGT
CGGAGCACATGACGCCGGTGGACAAGCTGGTCCTGGGGCGGGAGGGTTGC
TCGCTCCAAGAGGCGCAGGAAATCATCAAAGTTTCCAAGAAAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig95456:274..468+

>mRNA_S-dermatodea_contig95456.17568.1 ID=mRNA_S-dermatodea_contig95456.17568.1|Name=mRNA_S-dermatodea_contig95456.17568.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig95456:274..468+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGCCCATCACCGAGGACGGCCGCATAGGATCAAAGCTTGTCGGGCT
GTGCACGAAGCGAGATCTTGACCTTGTCGACGAGAGGCACGAGCCGTTGT
CGGAGCACATGACGCCGGTGGACAAGCTGGTCCTGGGGCGGGAGGGTTGC
TCGCTCCAAGAGGCGCAGGAAATCATCAAAGTTTCCAAGAAAGGTGGCGT
GCCCATCACCGAGGACGGCCGCATAGGATCAAAGCTTGTCGGGCTGTGCA
CGAAGCGAGATCTTGACCTTGTCGACGAGAGGCACGAGCCGTTGTCGGAG
CACATGACGCCGGTGGACAAGCTGGTCCTGGGGCGGGAGGGTTGCTCGCT
CCAAGAGGCGCAGGAAATCATCAAAGTTTCCAAGAAAGGT
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