mRNA_S-dermatodea_contig95443.17567.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95443.17567.1
Unique NamemRNA_S-dermatodea_contig95443.17567.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig95443.17567.1 vs. uniprot
Match: A0A6H5JL03_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL03_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.110e-15
Identity = 39/45 (86.67%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 KMQSAVGGSDEERALRKKRKKSKEDDRFNAVKSAIIKRLGDTCDV 135
            K+Q+AVGGSDEERALR+K++KSKEDDRFNAVKSAIIKRLGDTCD+
Sbjct:   18 KIQAAVGGSDEERALRRKKRKSKEDDRFNAVKSAIIKRLGDTCDL 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95443.17567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JL03_9PHAE1.110e-1586.67t-SNARE coiled-coil homology domain-containing pro... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95443contigS-dermatodea_contig95443:166..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D8LE18
Preferred nameSYP71
KEGG koko:K08506
KEGG Pathwayko04130,map04130
GOsGO:0000149,GO:0003674,GO:0005215,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005911,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0008565,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0022406,GO:0030054,GO:0031201,GO:0031224,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055044,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0090174,GO:0098796,GO:0140056
EggNOG free text desc.SNAP receptor activity
EggNOG OGs28JTR@1,2QS7N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-05_004390.1
Exons1
Model size135
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.5854564-CDS-S-dermatodea_contig95443:165..2971622925415.5854564-CDS-S-dermatodea_contig95443:165..297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95443 166..297 -
1694079918.5213835-CDS-S-dermatodea_contig95443:165..2971694079918.5213835-CDS-S-dermatodea_contig95443:165..297Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95443 166..297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.5958517-UTR-S-dermatodea_contig95443:297..3001622925415.5958517-UTR-S-dermatodea_contig95443:297..300Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig95443 298..300 -
1694079918.539108-UTR-S-dermatodea_contig95443:297..3001694079918.539108-UTR-S-dermatodea_contig95443:297..300Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig95443 298..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95443.17567.1prot_S-dermatodea_contig95443.17567.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95443 166..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95443.17567.1

>prot_S-dermatodea_contig95443.17567.1 ID=prot_S-dermatodea_contig95443.17567.1|Name=mRNA_S-dermatodea_contig95443.17567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
MQSAVGGSDEERALRKKRKKSKEDDRFNAVKSAIIKRLGDTCDV
back to top

mRNA from alignment at S-dermatodea_contig95443:166..300-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95443.17567.1 ID=mRNA_S-dermatodea_contig95443.17567.1|Name=mRNA_S-dermatodea_contig95443.17567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig95443:166..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAATGCAGTCTGCGGTGGGAGGATCGGACGAGGAGCGAGCCTTGCGAAA
GAAGCGCAAGAAGTCGAAGGAGGATGATCGGTTCAACGCCGTCAAGTCCG
CCATCATCAAGCGCCTCGGCGACACGTGCGACGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig95443:166..300-

>mRNA_S-dermatodea_contig95443.17567.1 ID=mRNA_S-dermatodea_contig95443.17567.1|Name=mRNA_S-dermatodea_contig95443.17567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig95443:166..300- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGTCTGCGGTGGGAGGATCGGACGAGGAGCGAGCCTTGCGAAAGAA
GCGCAAGAAGTCGAAGGAGGATGATCGGTTCAACGCCGTCAAGTCCGCCA
TCATCAAGCGCCTCGGCGACACGTGCGACGTGATGCAGTCTGCGGTGGGA
GGATCGGACGAGGAGCGAGCCTTGCGAAAGAAGCGCAAGAAGTCGAAGGA
GGATGATCGGTTCAACGCCGTCAAGTCCGCCATCATCAAGCGCCTCGGCG
ACACGTGCGACGTG
back to top