mRNA_S-dermatodea_contig95367.17559.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95367.17559.1
Unique NamemRNA_S-dermatodea_contig95367.17559.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-22
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGKAE 147
            VVEEIFGDSIHREVVGRSAKLL+FLSSMEDALTTEHLDLIWSSCVGKAE
Sbjct:  472 VVEEIFGDSIHREVVGRSAKLLQFLSSMEDALTTEHLDLIWSSCVGKAE 520
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A8K1CH08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH08_PYTOL)

HSP 1 Score: 56.6 bits (135), Expect = 4.780e-8
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            +++ IFGD IHREVV RS  L++FL+   D LTTE LD IW+SC+ K
Sbjct:  447 ILDAIFGDKIHREVVSRSLVLIKFLAE-SDKLTTEDLDTIWASCLQK 492
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A5D6XIP1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIP1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.540e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            V+EE+FGD IHRE+V RSA L++FL+   + L+  +LD+IW SC+ K
Sbjct:  477 VIEEVFGDRIHREIVSRSALLVKFLAET-NKLSAHYLDVIWQSCIQK 522
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A3R7FZP1_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZP1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.940e-8
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  415 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCIQK 460
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A3F2RUL0_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.940e-8
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  418 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCIQK 463
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: H3HBU9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBU9_PHYRM)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  439 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 484
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A0W8DNQ4_PHYNI (ER membrane protein complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNQ4_PHYNI)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  389 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 434
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BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A662X9W0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9W0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  447 IIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHCIDVIWQSCIQK 492
[Close]
BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: A0A3M6VMM8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMM8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  313 ILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIEK 358
[Close]
BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGK 141
            ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  443 ILEEIFGDRIHREIVSRSALLVKFLAD-SNKLDTHSIDVIWQSCIQK 488
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95367.17559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE1.500e-2297.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A8K1CH08_PYTOL4.780e-857.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XIP1_9STRA6.540e-853.19Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7FZP1_9STRA8.940e-853.19USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RUL0_9STRA8.940e-853.19USP domain-containing protein n=2 Tax=Phytophthora... [more]
H3HBU9_PHYRM1.670e-753.19Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0W8DNQ4_PHYNI1.670e-753.19ER membrane protein complex subunit 1 n=1 Tax=Phyt... [more]
A0A662X9W0_9STRA1.670e-753.19Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3M6VMM8_9STRA1.670e-753.19Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0MTA4_PHYIT1.670e-753.19Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95367contigS-dermatodea_contig95367:83..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.0727432-CDS-S-dermatodea_contig95367:82..2291622925415.0727432-CDS-S-dermatodea_contig95367:82..229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95367 83..229 +
1694079918.2066872-CDS-S-dermatodea_contig95367:82..2291694079918.2066872-CDS-S-dermatodea_contig95367:82..229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95367 83..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95367.17559.1prot_S-dermatodea_contig95367.17559.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95367 83..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95367.17559.1

>prot_S-dermatodea_contig95367.17559.1 ID=prot_S-dermatodea_contig95367.17559.1|Name=mRNA_S-dermatodea_contig95367.17559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
VVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTEHLDLIWSSCVGKAE
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mRNA from alignment at S-dermatodea_contig95367:83..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95367.17559.1 ID=mRNA_S-dermatodea_contig95367.17559.1|Name=mRNA_S-dermatodea_contig95367.17559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at S-dermatodea_contig95367:83..229+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTTGAGGAAATCTTCGGGGATAGCATCCACAGGGAGGTCGTTGGGAG
GTCCGCGAAGTTGCTGCGGTTTCTGAGCAGTATGGAAGATGCACTCACCA
CGGAACACCTTGACCTCATCTGGAGCTCCTGCGTCGGGAAAGCGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig95367:83..229+

>mRNA_S-dermatodea_contig95367.17559.1 ID=mRNA_S-dermatodea_contig95367.17559.1|Name=mRNA_S-dermatodea_contig95367.17559.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig95367:83..229+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTTGAGGAAATCTTCGGGGATAGCATCCACAGGGAGGTCGTTGGGAG
GTCCGCGAAGTTGCTGCGGTTTCTGAGCAGTATGGAAGATGCACTCACCA
CGGAACACCTTGACCTCATCTGGAGCTCCTGCGTCGGGAAAGCGGAGGTG
GTTGAGGAAATCTTCGGGGATAGCATCCACAGGGAGGTCGTTGGGAGGTC
CGCGAAGTTGCTGCGGTTTCTGAGCAGTATGGAAGATGCACTCACCACGG
AACACCTTGACCTCATCTGGAGCTCCTGCGTCGGGAAAGCGGAG
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