mRNA_S-dermatodea_contig95299.17551.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig95299.17551.1
Unique NamemRNA_S-dermatodea_contig95299.17551.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig95299.17551.1 vs. uniprot
Match: A0A653JRJ4_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JRJ4_9SPHN)

HSP 1 Score: 152 bits (384), Expect = 3.060e-41
Identity = 99/179 (55.31%), Postives = 99/179 (55.31%), Query Frame = 1 
Query:    1 SIADVAAQRREHHRENFRNLTETLTTEGK--------------------------------------------------------------------------------ALGATSRSMVGNATGADLRSIRETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI 297
            SIADVAAQRREHHRENFRNLTETLTTEGK                                                                                ALGATSRSMVGNATGADLRSIRETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI
Sbjct:  447 SIADVAAQRREHHRENFRNLTETLTTEGKLMDNITKYADSKNPALGNGVRMLDRLDRQRRALLEEHTGIKTERRMDVVARYGDSLKKHGLEGVATVAGERAKHHVDNARALGATSRSMVGNATGADLRSIRETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI 625
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BLAST of mRNA_S-dermatodea_contig95299.17551.1 vs. uniprot
Match: A0A850HDP7_9SPHN (Uncharacterized protein n=2 Tax=Altererythrobacter lutimaris TaxID=2743979 RepID=A0A850HDP7_9SPHN)

HSP 1 Score: 98.2 bits (243), Expect = 8.570e-22
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 SIADVAAQRREHHRENFRNLTETLTTEGKA------LGATSRSMVGNATGADLRSIRETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI 297
            ++ DVA  R EHH+ NFR + ETLTT+GK        GA  R  +G+ATG +L ++R+TQ RYA+A      +  + +VA  RAQHH  N KKVGSK+ CGIGNI
Sbjct:  500 TMGDVARDRWEHHKSNFRKIGETLTTKGKLKENMRNYGADKREKIGSATGMELHAMRDTQQRYADALKGSDKLKNLGQVAGDRAQHHWGNTKKVGSKIGCGIGNI 604
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BLAST of mRNA_S-dermatodea_contig95299.17551.1 vs. uniprot
Match: A0A6I4V3W6_9SPHN (Uncharacterized protein n=1 Tax=Pontixanthobacter luteolus TaxID=295089 RepID=A0A6I4V3W6_9SPHN)

HSP 1 Score: 86.7 bits (213), Expect = 9.690e-18
Identity = 50/123 (40.65%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:    1 SIADVAAQRREHHRENFRNLTETLTTEGK------ALGA------------------TSRSMVGNATGADLRSIRETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI 297
            ++ DVA QR +HH+ENFR + ETLTT+GK      A G                   T+R+ + NATG  +  + +T++RYA A   D  +  V  VAK RA+HHT+N K+ G K+ CGIGN+
Sbjct:  430 TLGDVAKQRMDHHKENFRKIGETLTTKGKLKENLKAYGQEKGEKISQFAGKMDQADRTARAGLQNATGVKVDRVSDTRDRYANALAGDDKVKNVTAVAKDRAKHHTDNAKRAGKKIGCGIGNL 552
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95299.17551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A653JRJ4_9SPHN3.060e-4155.31Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A850HDP7_9SPHN8.570e-2249.52Uncharacterized protein n=2 Tax=Altererythrobacter... [more]
A0A6I4V3W6_9SPHN9.690e-1840.65Uncharacterized protein n=1 Tax=Pontixanthobacter ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig95299contigS-dermatodea_contig95299:1..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.4071538-CDS-S-dermatodea_contig95299:0..2111622925414.4071538-CDS-S-dermatodea_contig95299:0..211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95299 1..211 -
1694079917.71691-CDS-S-dermatodea_contig95299:0..2111694079917.71691-CDS-S-dermatodea_contig95299:0..211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95299 1..211 -
1622925414.4195104-CDS-S-dermatodea_contig95299:451..5371622925414.4195104-CDS-S-dermatodea_contig95299:451..537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95299 452..537 -
1694079917.7329674-CDS-S-dermatodea_contig95299:451..5371694079917.7329674-CDS-S-dermatodea_contig95299:451..537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig95299 452..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig95299.17551.1prot_S-dermatodea_contig95299.17551.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig95299 1..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig95299.17551.1

>prot_S-dermatodea_contig95299.17551.1 ID=prot_S-dermatodea_contig95299.17551.1|Name=mRNA_S-dermatodea_contig95299.17551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
SIADVAAQRREHHRENFRNLTETLTTEGKALGATSRSMVGNATGADLRSI
RETQNRYAEAATSDKPIAAVAEVAKQRAQHHTNNVKKVGSKVACGIGNI
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mRNA from alignment at S-dermatodea_contig95299:1..537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig95299.17551.1 ID=mRNA_S-dermatodea_contig95299.17551.1|Name=mRNA_S-dermatodea_contig95299.17551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at S-dermatodea_contig95299:1..537- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTATTGCCGACGTAGCGGCTCAGCGCAGGGAGCATCACCGGGAGAACTT
CAGGAACCTGACAGAGACTCTGACAACCGAAGGCAAGTTGATGGATAACA
TCACCAAATATGCCGACAGCAAGAACCCCGCACTGGGCAATGGCGTTCGC
ATGCTCGATCGCCTTGACCGGCAACGTCGGGCGCTGTTGGAAGAGCATAC
GGGGATCAAGACAGAGCGCCGGATGGATGTCGTGGCTCGATATGGTGATA
GCCTGAAGAAACATGGCTTGGAAGGTGTTGCAACCGTTGCTGGAGAGCGC
GCGAAACATCATGTCGACAATGCGAGAGCGCTTGGAGCCACGAGTCGCTC
AATGGTCGGGAATGCGACCGGCGCCGACCTGCGCAGCATTCGCGAAACGC
AAAATCGGTACGCAGAAGCGGCGACATCCGACAAACCGATTGCCGCTGTT
GCAGAGGTTGCCAAACAGCGTGCCCAGCACCATACAAACAATGTCAAAAA
GGTAGGCTCCAAGGTTGCCTGCGGAATTGGGAATATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig95299:1..537-

>mRNA_S-dermatodea_contig95299.17551.1 ID=mRNA_S-dermatodea_contig95299.17551.1|Name=mRNA_S-dermatodea_contig95299.17551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig95299:1..537- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTATTGCCGACGTAGCGGCTCAGCGCAGGGAGCATCACCGGGAGAACTT
CAGGAACCTGACAGAGACTCTGACAACCGAAGGCAATCTATTGCCGACGT
AGCGGCTCAGCGCAGGGAGCATCACCGGGAGAACTTCAGGAACCTGACAG
AGACTCTGACAACCGAAGGCAAAGCGCTTGGAGCCACGAGTCGCTCAATG
GTCGGGAATGCGACCGGCGCCGACCTGCGCAGCATTCGCGAAACGCAAAA
TCGGTACGCAGAAGCGGCGACATCCGACAAACCGATTGCCGCTGTTGCAG
AGGTTGCCAAACAGCGTGCCCAGCACCATACAAACAATGTCAAAAAGGTA
GGCTCCAAGGTTGCCTGCGGAATTGGGAATATCAGCGCTTGGAGCCACGA
GTCGCTCAATGGTCGGGAATGCGACCGGCGCCGACCTGCGCAGCATTCGC
GAAACGCAAAATCGGTACGCAGAAGCGGCGACATCCGACAAACCGATTGC
CGCTGTTGCAGAGGTTGCCAAACAGCGTGCCCAGCACCATACAAACAATG
TCAAAAAGGTAGGCTCCAAGGTTGCCTGCGGAATTGGGAATATC
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