mRNA_S-dermatodea_contig9525.17547.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9525.17547.1
Unique NamemRNA_S-dermatodea_contig9525.17547.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9525.17547.1 vs. uniprot
Match: D7FH99_ECTSI (Rtt106 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH99_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.010e-6
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:    3 VVGMEATEEE----AAKTHEFSNIEREALPALQQYIQSALVAPREREAKKAA 146
            VVG+EA +++    A +  EFSNI+R+ALP+LQ YIQ ALVAPR+REAK+ A
Sbjct:   31 VVGLEAEDDDGEPVAKQQQEFSNIDRDALPSLQSYIQDALVAPRQREAKQEA 82
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BLAST of mRNA_S-dermatodea_contig9525.17547.1 vs. uniprot
Match: A0A6H5KIG1_9PHAE (Rtt106 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.160e-6
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:    3 VVGMEATEEE----AAKTHEFSNIEREALPALQQYIQSALVAPREREAKKAA 146
            VVG+EA +E     A +  EFSNI+R+ALP+LQ YIQ ALVAPR REAK+ A
Sbjct:  274 VVGLEAEDEHGELVAKQQQEFSNIDRDALPSLQSYIQDALVAPRRREAKREA 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9525.17547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH99_ECTSI1.010e-659.62Rtt106 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KIG1_9PHAE4.160e-661.54Rtt106 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9525contigS-dermatodea_contig9525:862..2450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9525.17547.1prot_S-dermatodea_contig9525.17547.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9525 862..2439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.195667-CDS-S-dermatodea_contig9525:861..10981622925414.195667-CDS-S-dermatodea_contig9525:861..1098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9525 862..1098 -
1694079917.5960557-CDS-S-dermatodea_contig9525:861..10981694079917.5960557-CDS-S-dermatodea_contig9525:861..1098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9525 862..1098 -
1622925414.2068002-CDS-S-dermatodea_contig9525:2361..24391622925414.2068002-CDS-S-dermatodea_contig9525:2361..2439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9525 2362..2439 -
1694079917.6108558-CDS-S-dermatodea_contig9525:2361..24391694079917.6108558-CDS-S-dermatodea_contig9525:2361..2439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9525 2362..2439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.2220008-UTR-S-dermatodea_contig9525:2439..24501622925414.2220008-UTR-S-dermatodea_contig9525:2439..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9525 2440..2450 -
1694079917.621009-UTR-S-dermatodea_contig9525:2439..24501694079917.621009-UTR-S-dermatodea_contig9525:2439..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9525 2440..2450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9525.17547.1

>prot_S-dermatodea_contig9525.17547.1 ID=prot_S-dermatodea_contig9525.17547.1|Name=mRNA_S-dermatodea_contig9525.17547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MEATEEEAAKTHEFSNIEREALPALQQYIQSALVAPREREAKKAAAKAKE
EETTEEVSSMPVQDETVAPTATSKTAPTATSSTPTGTSAGPSNGATSGGG
YTLRD
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mRNA from alignment at S-dermatodea_contig9525:862..2450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9525.17547.1 ID=mRNA_S-dermatodea_contig9525.17547.1|Name=mRNA_S-dermatodea_contig9525.17547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at S-dermatodea_contig9525:862..2450- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTGGTGGGCATGGAGGCCACGGAAGAAGAGGCCGCGAAGACCCATGAG
TTCTCCAACATCGAGCGGGAGGCTCTCCCTGCCTTGCAGGTACCAAGGCA
GCATCGCCGCCAGATGTGTCATGGTCCATGTTCAATCGTTCGATCGTCTG
GCGCTTGCGCTACGTAGGCCCCATGTACCTGGGGGGACGGCAGCCCCATA
AGCATACCCCCCCCCAGAAACAAGAACATATTTGTACTGTAGAAGAGCTA
GCGTTGGCGTCCAATATATGTTGTGGGATGGAAACATGCCCCACACTTGC
TAATTCAGTGGAGGTCTACGTTATGTATGATGCTACGGGGTAGGTCATTG
TAGAAATTGTATATCTGGATGGAGGTGTGGCACTGCAATACAAGTAAAAT
GTAAACTCTGGGAATTGTGTGTTTTTTTTTGCAGGGGCCTTTACGTGCCC
GCAAATTCAGACAGCGCCGAACCAGCACCGGCTGAAAATCACACATTTCC
GAACCAGTACCGGTTTTTATAGATTGTATCACAGCTGTGGTGCGGATCCC
AAGACCGGCACTGTAAGATTATACATGTATATTTTTCACATGTTACACAT
GCCCTTTATAATTTCACATACATATCCAGTGCCGGTTAGAAAAGTCAAAA
TTGTGACAGTGCCGAACCCGTGCCGAGTTTTTTATAATTGAAAATCTGAC
TGCCGAACCGGAAACGTTTCTGGTACTGTAAAAATACATGTGTAAATGTG
TGGTAAGTGCCGGGCATGTTAAATCCCTGTTTTTTTTGTCAAGAAAGATT
GTGTACCCCGCCCCCCCCCACACGCCGCATATTAAGAAGCCCCCGTACGT
TTCGTCTACAGTTAACGCTTTTGGTTTGCGACATGCGTTTACCGTTTTGG
GACTGAGTCTTTTTTTAGTCGAAAGTTGTAAGAAGAGGAGCGTTACGCAT
GCCATCTAAGCGTGGTACATGCATGTGGCACGAAGAAGGGCAGCGGGGGG
TGGGTCGCCGTTTAGTGTGAAGAAAAAAAATAGTGCGGGTAGATGACCCT
GAAAGCAGGGTCGGTCCAAATAGAGATCAAAGTCCCTTTGGGGGCTTGGA
GTATAGTCACGCCTACTGAATGTGCAACATTTGCTTGCCCTGTTTATATG
TCCAATCAACCCATGACACATGACACATCGGTTGGCGTCGCGCACGCAAG
GATGATGGCTAGCAGCTGGTATATTCCTTGTGACACACAGCCTAGCCTGG
CCGGCAAAAACCCGGCATATCGCTCCGTCCCGGCATTGCTGTGACGCGTG
GCCTTTGTATGTTTAACATACGTACCCTCCCCCCCCCCCTCCGCATTGGC
AGCAATATATCCAGAGCGCGCTCGTAGCCCCGCGCGAGCGAGAAGCAAAG
AAGGCTGCCGCTAAGGCCAAGGAAGAAGAGACCACCGAGGAGGTCTCCTC
TATGCCGGTTCAGGATGAAACTGTCGCGCCAACCGCAACATCGAAGACGG
CACCAACCGCAACGTCGTCGACGCCAACCGGAACATCTGCGGGTCCTTCG
AACGGTGCTACGTCGGGAGGAGGATACACGTTGCGCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9525:862..2450-

>mRNA_S-dermatodea_contig9525.17547.1 ID=mRNA_S-dermatodea_contig9525.17547.1|Name=mRNA_S-dermatodea_contig9525.17547.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig9525:862..2450- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCCACGGAAGAAGAGGCCGCGAAGACCCATGAGTTCTCCAACAT
CGAGCGGGAGGCTCTCCCTGCCTTGCAGATGGAGGCCACGGAAGAAGAGG
CCGCGAAGACCCATGAGTTCTCCAACATCGAGCGGGAGGCTCTCCCTGCC
TTGCAGCAATATATCCAGAGCGCGCTCGTAGCCCCGCGCGAGCGAGAAGC
AAAGAAGGCTGCCGCTAAGGCCAAGGAAGAAGAGACCACCGAGGAGGTCT
CCTCTATGCCGGTTCAGGATGAAACTGTCGCGCCAACCGCAACATCGAAG
ACGGCACCAACCGCAACGTCGTCGACGCCAACCGGAACATCTGCGGGTCC
TTCGAACGGTGCTACGTCGGGAGGAGGATACACGTTGCGCGACCAATATA
TCCAGAGCGCGCTCGTAGCCCCGCGCGAGCGAGAAGCAAAGAAGGCTGCC
GCTAAGGCCAAGGAAGAAGAGACCACCGAGGAGGTCTCCTCTATGCCGGT
TCAGGATGAAACTGTCGCGCCAACCGCAACATCGAAGACGGCACCAACCG
CAACGTCGTCGACGCCAACCGGAACATCTGCGGGTCCTTCGAACGGTGCT
ACGTCGGGAGGAGGATACACGTTGCGCGAC
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