mRNA_S-dermatodea_contig9503.17533.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9503.17533.1
Unique NamemRNA_S-dermatodea_contig9503.17533.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9503.17533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9503contigS-dermatodea_contig9503:227..1220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9503.17533.1prot_S-dermatodea_contig9503.17533.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9503 356..853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.9204667-UTR-S-dermatodea_contig9503:226..3551622925412.9204667-UTR-S-dermatodea_contig9503:226..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 227..355 +
1694079916.6527934-UTR-S-dermatodea_contig9503:226..3551694079916.6527934-UTR-S-dermatodea_contig9503:226..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 227..355 +
1622925412.9473708-UTR-S-dermatodea_contig9503:853..12201622925412.9473708-UTR-S-dermatodea_contig9503:853..1220Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 854..1220 +
1694079916.685144-UTR-S-dermatodea_contig9503:853..12201694079916.685144-UTR-S-dermatodea_contig9503:853..1220Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 854..1220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.9354577-CDS-S-dermatodea_contig9503:355..8531622925412.9354577-CDS-S-dermatodea_contig9503:355..853Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 356..853 +
1694079916.6723607-CDS-S-dermatodea_contig9503:355..8531694079916.6723607-CDS-S-dermatodea_contig9503:355..853Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 356..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9503.17533.1

>prot_S-dermatodea_contig9503.17533.1 ID=prot_S-dermatodea_contig9503.17533.1|Name=mRNA_S-dermatodea_contig9503.17533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=166bp
MHRKPLPVTSGDRFVDARLILASAQRHAYFGRRTLRFRKPPDGSTEGEVV
NCLLPIYTLRALDTLIIFTAIVPPDTPRRSLLLQVSEQCGPATWRHEQEM
HTFYTRKRQHAGSLYDAQRAEVPHPIRTEYNILTKNVTAINGNTKRADKA
VQVPTRTKLKTRTYK*
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mRNA from alignment at S-dermatodea_contig9503:227..1220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9503.17533.1 ID=mRNA_S-dermatodea_contig9503.17533.1|Name=mRNA_S-dermatodea_contig9503.17533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at S-dermatodea_contig9503:227..1220+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACCGAATGCCTGTCAATTTTCTTACATCCCTTATGAACAGTAGAACAC
GGATTTCTCACACGGATTTGTTTTACCTGACCAAATCCCTTACACAGAGC
ATATCAACGTCGAAAAGTGACTTCTGTCAATGCATCGTAAACCCCTCCCC
GTTACAAGCGGTGATCGTTTCGTCGACGCGCGATTGATTTTAGCTTCGGC
ACAACGCCACGCGTATTTTGGTCGCCGTACGCTACGATTCCGCAAACCAC
CCGACGGGAGCACTGAAGGCGAGGTCGTGAACTGCTTACTGCCAATCTAC
ACCTTACGCGCCCTGGACACTTTAATAATTTTTACAGCCATCGTACCCCC
CGATACCCCAAGGAGGTCGCTCCTCCTGCAAGTCTCGGAGCAGTGCGGCC
CGGCGACGTGGCGTCACGAACAAGAAATGCACACGTTCTATACCAGAAAA
CGACAACACGCCGGGTCGCTCTATGACGCGCAGCGAGCTGAGGTACCACA
CCCTATCCGCACGGAGTATAACATTCTGACGAAAAATGTAACGGCAATTA
ACGGCAATACAAAGCGTGCCGACAAAGCCGTGCAAGTACCGACGAGAACA
AAACTAAAAACTCGTACGTACAAGTAGACACAAAACCTTCTTCTCGACAA
AAACACACGACGAATCTTGAAATACAAAGCAAACGGTACGGCGTTACATA
AACGGACAGGGACGATTACAGCTCGTGCTACACATTCCCTCCTCTTCCTC
CTTCCTTCGCTCCTTCTTCTTCCCTTCCTTCGCCTGCTCGGATCAGATTT
CCGAGAACATCCCGTTGTGGATGGCGGCCGGCTCTCGTGGCCACACGGGG
CAGTCCTCGGCCTTCCTCTCTCCCTTGAACATCGGCCACGCCCTCAACAT
TTTACTGGCGCTGCTGACCATATTACTCTTTGGGCTGCTGCTACCGCTGC
CGTTGCAAGGGATGACAGGGGCGACGCGGCCAATTTTCCGGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9503:227..1220+

>mRNA_S-dermatodea_contig9503.17533.1 ID=mRNA_S-dermatodea_contig9503.17533.1|Name=mRNA_S-dermatodea_contig9503.17533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at S-dermatodea_contig9503:227..1220+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATCGTAAACCCCTCCCCGTTACAAGCGGTGATCGTTTCGTCGACGC
GCGATTGATTTTAGCTTCGGCACAACGCCACGCGTATTTTGGTCGCCGTA
CGCTACGATTCCGCAAACCACCCGACGGGAGCACTGAAGGCGAGGTCGTG
AACTGCTTACTGCCAATCTACACCTTACGCGCCCTGGACACTTTAATAAT
TTTTACAGCCATCGTACCCCCCGATACCCCAAGGAGGTCGCTCCTCCTGC
AAGTCTCGGAGCAGTGCGGCCCGGCGACGTGGCGTCACGAACAAGAAATG
CACACGTTCTATACCAGAAAACGACAACACGCCGGGTCGCTCTATGACGC
GCAGCGAGCTGAGGTACCACACCCTATCCGCACGGAGTATAACATTCTGA
CGAAAAATGTAACGGCAATTAACGGCAATACAAAGCGTGCCGACAAAGCC
GTGCAAGTACCGACGAGAACAAAACTAAAAACTCGTACGTACAAGTAGAT
GCATCGTAAACCCCTCCCCGTTACAAGCGGTGATCGTTTCGTCGACGCGC
GATTGATTTTAGCTTCGGCACAACGCCACGCGTATTTTGGTCGCCGTACG
CTACGATTCCGCAAACCACCCGACGGGAGCACTGAAGGCGAGGTCGTGAA
CTGCTTACTGCCAATCTACACCTTACGCGCCCTGGACACTTTAATAATTT
TTACAGCCATCGTACCCCCCGATACCCCAAGGAGGTCGCTCCTCCTGCAA
GTCTCGGAGCAGTGCGGCCCGGCGACGTGGCGTCACGAACAAGAAATGCA
CACGTTCTATACCAGAAAACGACAACACGCCGGGTCGCTCTATGACGCGC
AGCGAGCTGAGGTACCACACCCTATCCGCACGGAGTATAACATTCTGACG
AAAAATGTAACGGCAATTAACGGCAATACAAAGCGTGCCGACAAAGCCGT
GCAAGTACCGACGAGAACAAAACTAAAAACTCGTACGTACAAGTAG
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