mRNA_S-dermatodea_contig9503.17532.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9503.17532.1
Unique NamemRNA_S-dermatodea_contig9503.17532.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.650e-52
Identity = 107/274 (39.05%), Postives = 165/274 (60.22%), Query Frame = 2 
Query:  401 PEEAACDNDVFTVGFLPGEGAALVIRSVATVITASIFSAWCGDRSKIRRKLLFFTHWASGLVYVLSEWIMAMMILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKRD-PRFLVAGWCMRYVHIALDTIVLYGVL 1219
            P   +C+     +G   GE     IR ++T+++ S+ SAWC   +K++R  LFF HW SGLV+ L   +  MM+  CW++  L+  IK +KF+E  + NM+AIT+LAICV LALIVS+  T+  V+S+ SP ++ +++ +S  I +  VPLW+   V  GT +W+ +   Q S   V +S F LE  +   M  ++  L+  R  E+++CW+   RI+YYF L+ +  AVN+ IG+   +++    D PR  +  W  RY+H+ALDT VLYGVL
Sbjct:    2 PTILSCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWC-SWTKVKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVI-GTGFWIVNSD-QGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVL 272
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BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.650e-51
Identity = 101/237 (42.62%), Postives = 152/237 (64.14%), Query Frame = 2 
Query:  416 CDNDVFTVGFLPGEGAALVIRSVATVITASIFSAWCGDRSKIRRKLLFFTHWASGLVYVLSEWIMAMMILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWI 1126
            C+   F VG   GE     IR ++T+IT S+ SAW   R  I++ LLFF+HW SGL++ L     A M+  CW+ + L  +IK LKF EL A NMLAITNLAICV LALIV +  T++ VRS  +P ++L+ + LS  + A +VP W + +V +GT +W+++   Q+++ W+ ++ F +E  +   ML +V  LV  RR E+++ W+ H RI+YYFGL+ IA  VNL +G+ G +++
Sbjct:   32 CNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTE-MVVSGTAFWVQTHE-QAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYV 266
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.570e-41
Identity = 100/275 (36.36%), Postives = 152/275 (55.27%), Query Frame = 2 
Query:  617 MILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKRDPRFLVA-GWCMRYVHIALDTIVLYGVLVNTSAADKMAGDGDLEQNASTGQAHDPSDGPGPGCCEKEKNVPPVDRKIGRVAPV------IPCNGSGSSSPK 1420
            M+L CW+   +   +K LKF+EL A NMLAITNLAIC  LAL++ +  T+A V+S  SP +V + + +S  +   A P WQ  +V+ GT + + +   +S + W+ +S+F LE  +   M  +V  L+  R  E+++CW+ H RI+YYFGL+ I   VNL +GV G +++   R+   L+   W  R++HIALDT VLYGVL   +A     G  D ++  S   A   S+  G   C +          IG ++        + C+ SGSS+ K
Sbjct:    1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVS-GTGFAVRNEDQRSGD-WLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVLGVPAATGHDEGP-DAQRRCSAAAAAPGSNPRGCSSCSRPGLNGGASPNIGELSKASSWKGRVSCSSSGSSALK 272
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BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 8.190e-41
Identity = 89/225 (39.56%), Postives = 136/225 (60.44%), Query Frame = 2 
Query:  617 MILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKRDPRFLVA-GWCMRYVHIALDTIVLYGVLVNTSAADKMAGDGDLEQNASTGQ 1288
            MI  CW  ERL   IK LK++E T+ NMLAITNLAIC+ LAL+V++  T++ V S+ +P +VL+ + +S +  A +VP W   +V+ GT +W+ +     ++ W+ +S  +LE  +   M  +V  L+A R   +++CW+ H RI+YYF L+ I  AVNL +G+ G  ++       +L++  W  RY H+ALDTIVLYGVL  T   D+  G        S+G+
Sbjct:    8 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVS-GTAFWVTNADKAKAD-WIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVL-GTRHMDEGGGSAASTSGTSSGR 229
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.700e-37
Identity = 89/210 (42.38%), Postives = 127/210 (60.48%), Query Frame = 2 
Query:  617 MILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLW-ISWKRDPRFLVAGWCMRYVHIALDTIVLYGVLVNTSAADK 1243
            MI  CW+ E L   IK LKF+EL A NMLAITNLAICV L+LIV +    + V+SI + K+VL+ + LSA + A AVP W   +++ GT +W E G  +  + +V IS F++E  +   M  +V  L+  R  E+++CW  H  ++YYFGL+ +    NL +GV G ++ IS    P  ++  W  R V IALDTIVL+ VL   S  ++
Sbjct:    1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLS-GTGFW-ELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDER 208
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.910e-37
Identity = 91/245 (37.14%), Postives = 145/245 (59.18%), Query Frame = 2 
Query:  575 SGLVYVLSEWIMAMMILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWL-ESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKR-DPRFLVAGWCMRYVHIALDTIVLYGVLVNTSAADKMAGDGDLEQNASTGQAHDPS 1303
            SG +  L+     +M+ AC++   LV +IK + FV +T+ NMLA TNL IC+ LALIVS+  TM  V+++ SP+++ IM+ +SA + A  VPLW+  +V  GT +W   S P +  N ++ +S +++E  +   ML +V  L   R  E+++CW+ H RI+YYF L+    AVNL +G+ G  ++   R +P   +  W  RY+HI+ DT+VLYG L   S  ++   D    +++  G  H+ S
Sbjct:    9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVL-GTHFWFTNSDPVK--NDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGALREGSIDERAEAD----RSSQDGHGHNAS 246
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 5.420e-37
Identity = 87/240 (36.25%), Postives = 142/240 (59.17%), Query Frame = 2 
Query:  575 SGLVYVLSEWIMAMMILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWI-SWKRDPRFLVAGWCMRYVHIALDTIVLYGVLVNTSAADKM--AGDGDLEQNASTG 1285
            +G+++ L   +  MM+  CW+ + L  +IK +KFVEL + +MLA+T+LAICV LALIVS+  T+  V+S+ SP ++ +M+ +S  + A  VPLW+  +V  GT +W+ +   Q     V +S F LE  +   M  +V  L+  R  E+++CW+ H RI+YY  L+ +   ++L IG+   +++    +  R  +  W  RY+HIALDT VLYGVL      +++  A   D+  N++ G
Sbjct:   10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVV-GTSFWIVNSD-QGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLREKDMDERVGNARPSDINSNSTVG 247
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.140e-33
Identity = 70/170 (41.18%), Postives = 111/170 (65.29%), Query Frame = 2 
Query:  617 MILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWI 1126
            MI  CW  ERL   IK LK++E T+ NMLAITNLAIC+ LAL+V++  T++ V+S+ +P +VL+ + +S +  A +VP W   +V+ GT +W+ +     ++ W+ +S  +LE  +   M  +V  L+A R   +++CW+ H RI+YYF L+ IA AVNL +G+ GL ++
Sbjct:    1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVS-GTAFWVTNADKAKAD-WIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYV 168
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.200e-30
Identity = 74/177 (41.81%), Postives = 111/177 (62.71%), Query Frame = 2 
Query:  617 MILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKRDPR 1147
            MI  CW+   L  +IK LKF+EL + NMLA+TNLAICV LAL+V +  T++ V S+ SP+++ + + L+    A AVP W K ++ TGT +   S   Q  + W  +S+FL E  +   M+ +V  L+  R  E+++CW+ H RI+YYFGL+ IA  VNLV+G+ G ++I  +   R
Sbjct:    1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSW-KTIILTGTYFSPYSEDKQDLD-WSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGEGQRR 175
[Close]
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.140e-30
Identity = 70/178 (39.33%), Postives = 114/178 (64.04%), Query Frame = 2 
Query:  611 AMMILACWSKERLVWVIKLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAP-VRSIGSPKMVLIMVGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELCIACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVGGLLWISWKRD 1141
            A MI  CW+   L+ +IK  KF+EL + NMLA+TNLAIC+ LAL+V +     P V S+ SP ++++ + +S    A A P W+  ++ +GT ++ E+   + S+ W+TIS+F LE  +   M  +V  L+  R  E+++CW+ H RI+YYFGL+ IA  VNL++G+ G++++   R+
Sbjct:    3 ATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEF-IILSGTGFFPETENQRGSD-WITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDRE 178
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9503.17532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FTK5_ECTSI3.650e-5239.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNM4_ECTSI2.650e-5142.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNN1_ECTSI3.570e-4136.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K8K6_9PHAE8.190e-4139.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP0_ECTSI1.700e-3742.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWL8_9PHAE2.910e-3737.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK4_ECTSI5.420e-3736.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNN2_ECTSI7.140e-3341.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY2_9PHAE1.200e-3041.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM5_ECTSI4.140e-3039.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9503contigS-dermatodea_contig9503:224..7191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2350
Cds size1194
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9503.17532.1prot_S-dermatodea_contig9503.17532.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9503 1019..6830 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.9833233-UTR-S-dermatodea_contig9503:223..10181622925412.9833233-UTR-S-dermatodea_contig9503:223..1018Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 224..1018 -
1694079916.698901-UTR-S-dermatodea_contig9503:223..10181694079916.698901-UTR-S-dermatodea_contig9503:223..1018Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 224..1018 -
1622925413.0585754-UTR-S-dermatodea_contig9503:6830..71911622925413.0585754-UTR-S-dermatodea_contig9503:6830..7191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 6831..7191 -
1694079916.7539907-UTR-S-dermatodea_contig9503:6830..71911694079916.7539907-UTR-S-dermatodea_contig9503:6830..7191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9503 6831..7191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.9969513-CDS-S-dermatodea_contig9503:1018..16631622925412.9969513-CDS-S-dermatodea_contig9503:1018..1663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 1019..1663 -
1694079916.7105901-CDS-S-dermatodea_contig9503:1018..16631694079916.7105901-CDS-S-dermatodea_contig9503:1018..1663Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 1019..1663 -
1622925413.0092661-CDS-S-dermatodea_contig9503:3442..36011622925413.0092661-CDS-S-dermatodea_contig9503:3442..3601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 3443..3601 -
1694079916.72022-CDS-S-dermatodea_contig9503:3442..36011694079916.72022-CDS-S-dermatodea_contig9503:3442..3601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 3443..3601 -
1622925413.0245228-CDS-S-dermatodea_contig9503:4732..49071622925413.0245228-CDS-S-dermatodea_contig9503:4732..4907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 4733..4907 -
1694079916.7336326-CDS-S-dermatodea_contig9503:4732..49071694079916.7336326-CDS-S-dermatodea_contig9503:4732..4907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 4733..4907 -
1622925413.0435727-CDS-S-dermatodea_contig9503:6615..68301622925413.0435727-CDS-S-dermatodea_contig9503:6615..6830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 6616..6830 -
1694079916.7417338-CDS-S-dermatodea_contig9503:6615..68301694079916.7417338-CDS-S-dermatodea_contig9503:6615..6830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9503 6616..6830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9503.17532.1

>prot_S-dermatodea_contig9503.17532.1 ID=prot_S-dermatodea_contig9503.17532.1|Name=mRNA_S-dermatodea_contig9503.17532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=398bp
MVLDLPDPLEAFPPEEAACDNDVFTVGFLPGEGAALVIRSVATVITASIF
SAWCGDRSKIRRKLLFFTHWASGLVYVLSEWIMAMMILACWSKERLVWVI
KLLKFVELTADNMLAITNLAICVQLALIVSNAYTMAPVRSIGSPKMVLIM
VGLSALIPATAVPLWQKRLVTTGTQYWLESGPTQSSNVWVTISQFLLELC
IACAMLFVVGVLVATRRLELRKCWQAHVRIKYYFGLSCIAVAVNLVIGVG
GLLWISWKRDPRFLVAGWCMRYVHIALDTIVLYGVLVNTSAADKMAGDGD
LEQNASTGQAHDPSDGPGPGCCEKEKNVPPVDRKIGRVAPVIPCNGSGSS
SPKSNMVSSASKMLRAWPMFKGERKAEDCPVWPREPAAIHNGMFSEI*
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mRNA from alignment at S-dermatodea_contig9503:224..7191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9503.17532.1 ID=mRNA_S-dermatodea_contig9503.17532.1|Name=mRNA_S-dermatodea_contig9503.17532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6968bp|location=Sequence derived from alignment at S-dermatodea_contig9503:224..7191- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTCGCCAAAGGACGAGAATCGTAAACGGGACCCTTTTCTACTCCTCCG
ACGGACGTACCGTGCGGGCGCCGACGTTTCCTCTGCGCAACTCGCCACGC
CAAACCTCGCCGTCGCTCTTTGCGAACGAGCCGTGTAATTGGCAAGGGTC
GGACCGGCTCGGGCGCACAATTTCCTCGCCCGACAGAGAAACAGAGGGAG
AGAGAAAGAAAGAGGCCCGACGCAATTCACGGGGCTTCGTGAGCTACCGG
TACAAGCCGGTAACCGCAGGATTTTATCCGTATTGAACGAGGGGGGCAGA
CGGATCGGCGGGCGTGATAATATCGCCGTGTTCGCTACGTTCGCGCCGGA
CTGCCATCATCATGGTGTTGGATCTGCCGGATCCCCTGGAAGCCTTCCCG
CCGGAAGAGGCGGCTTGCGACAACGATGTGTTCACCGTGGGGTTTCTACC
CGGGGAGGGGGCGGCCCTTGTGATTCGCTCGGTCGCTACCGTCATTACCG
CCAGCATTTTCTCGGCGTGGTGCGGTGACAGGTCGAAGATTCGACGGAAG
CTGCTCTTCTTCACGCACTGGGCTTCGTGAGTGTCCAGTGTCCGACTCGA
TTGGGTGTGCTTCGTGTGCAATTGCATGGACCGCCACCAGCTACATGCCC
GCCTCGTTTTCGTAACTTTTGGTATAATACACTACAGTAGCGTTGTTACA
AAAATCGGTGAGTGAGTGTAGCTGGTTCGGGCATTTACGTTGACTTGCCA
TTTTTCTGCCATGCTATCCCGGTCTGGCTCATGTCATGTTGTTCCTGCAG
TACTATGATAAAACGTCTTAAGGATGATATCGTACATAGTAATACTGGCC
AGTGTGGACCTGATATTACTTAGGGTTAGTGTGGACCCGATGCCCACATT
GTTCGATACAAAAATTGTCAAGGGAAACGCTCGAAAATGGAGCTCTCCAG
AGACCGACGTTGATGGAGCTACTGGTAGGCGCCGGCGGGTTGGTCGCCTC
TGAGCAACAAGTGTGCTGGCTATGCTTCACTGGAAACCAAACGTTTGATG
GGAATATCCCAGTGAGTTGTGCTATTGCCCGAGATGCACGTTGAGCGCCA
GCGTAGGTTGTCAACGGGCTCCCCTTCCTCTATTATGCCACGCCTATCTC
TGTGCGTACCAGAGAAATAAATAGCATTTAAAATCAGCATTTAACGTCAA
AAAGTTGTACAAAGTACTGTTTCGGCGGGGATCCTTAAGCCGCCGGAAGA
AACGCCTGCGGCGTTTTGGCACCGGATTTGTCTCCGGCGGCAAGCCGCCG
GAGGGATTTTTGTCAGCGGCGGTAATCGGGATTTTCAGATCCTGGCGGCG
GAGCCGCCGCCCACAAACCCCTAGTTATTTCCCTGGTGCGTTCCCCTCTG
TATAGCTGAACATATCCACTAGCCCGCGAACGTGCGCGATGACACCCGAC
GGCATGAGAGTGCGGCACCAGACTCTCTTTCCTATCCCTTTCGTACGCCT
GTTACACTGTAGAACATGCGAAGATCTCGAATAAGGGCTATCCCGCCCTA
GACACCCCCGAAAGCCAGTCGCACGCTCGCTTGCTTCGCTCGCTAGTCCA
AAAATACCCTTTTCTACTTGTGCATATAGTAGCGATAATAGTTGCGTGGG
GCGACTCGGACCACACGCCCTTTATCTCACTCAGGGATAGTGGAAGAGCA
GAGGTTTCCGTGGTGTGAGTCGGGGGAAAGTTCGACTTCTCGGTGTCACT
GCGTCCAGGGTCCGAGCCCCGCTTGAGCCAACCATTTTTCTTGTCTCGAC
CTCCGACGCAGGAGGCTCGAAAACGTCGAGTAAGCAAACTCCGACGAAAT
TCGGCCAAGAGCTGAAGGACGTCGCTCGCCCCGATGCCCGATACATATCG
AACGGTGGCGCCGGAGAGAGATACAGATGTGGGAGGATCTCCTGCGACCA
CAGACGCTCCACATGGCTGGGGGTGATTCTACGCGATTCCCGAAATGATT
GTATTTGGTAACAATGCTTCATCGCGCGAAGCAACGCTACCAACAAACCC
CGAGATAACACCCGCACCGGGGCAAGCAAAAAGTAACACGCTGAAAACAC
GTAAAACAAAGAACATGATAAGTTCCAGTTTACGATCGGCTTGCGACTGA
AAGCTTGGCAAAAACCGCCTTTTCAAAATCCGCCCGCATTCTCAGTGTAT
TCTCACGGCGTATGTGGAGCTTTAAGTGTTGTGTCGCCGTCGTCGTCGTA
CTTCCCCTCTTCGTGTCGCGCGCCGTGTCAGCAGAGGGCTGGTCTACGTG
TTGTCGGAGTGGATCATGGCCATGATGATCCTTGCGTGCTGGTCCAAGGA
AAGGTTGGTTTGGGTCATCAAGCTCTTGAAGTTTGTCGAGCTCACGGCCG
ACAACATGCTGGCCATCACCAATCTCGCCATCTGCGTTCAACTTGCCCTC
ATCGTCTCGGTGAGTAGGAAATGCCGGGGCCCACTTTTTTCGAACCCCTT
GATTGATCGATTGATTATTCACACGTAAAACCGACCGGCCCACCAATTGG
TTGCCGACCCCGCTCGTCGTCAGATGAGAAATAGAGAGATCGGAGAAACC
CTACGGGTTTCCTATATATAGATGTACATATAAAGAAGGGATTGACACAA
ACTCTCGGTAACAGAGGGGGCATACCTCGGAACTAACCCTGCACTGTATC
ATGTGAAACGCTTCGAGACACACAAGTGAGTCCGGGTGGCAAGTTATCGT
TCTTAGGCGAAAATTGCGGAGCGAATGCCCCACGTGTGCAGGCTTCGCTT
AGGCACTACCGACGAATCGGTGCGCCCCTACTCTCACGCCCGGGCATAGT
GTGTTGTGGTTTGAAGTCCGCGCCGAGATTCGTGTTTGTAACAAAACGGA
CTTACTGCGTCTGGTCGATTTGTCGTGCTCAGTGATGCAGCAGTAGGACT
GCGTGGCCTTGGGAAGCCGGAAGGGGCATGTCTGTACACCTTTTTCGCCG
CGCCATGCACCCTCTTCTCTCCGCGGTTCCTCCCCCATGCCCGACCACAA
CCTGTTCGCTTAACCTTGGCGCCCGATCGCGTAACAGATGCATAGCCCTG
TACAAGGCGTGCACGCTCTTTTTGTTGTTTTTTGCACACATATTGTAAAC
TTGCTTTTCCGAGGTCCGTCTGTCTGTGGTCACAAGGGATCATCCCATCT
CTGCACGGTTCTCACCTTTGCTTTTTAATCGCGCATTGGGTGGGTTCGGC
ATTTCTGCAGCTCGCCGATTTTCTCGGATTTTGCTTACTCACGCTCTCGC
ACTTTCCGCGGCGGAGATCAGAGAAAATATAGGAAAGATCGACTCTGCCG
GGATTCGAACCCGGGTCCTCCGCTTACTGGGCTGTTGACCAACCAGATCA
ACCACGGAGTAGGCTGTATATAGCCTATAAATGCGCAAAACAAGTTCCAA
CGTACTTTTCAAGCGTACATACAGTTAGGTTTTTGTTTAGCACCACCGCC
TCTCCCTTTGTTACCCACCACCCCCCTACCCCTTCGCGCTCCATCCGGAT
GTGTGCCTGCCCTATTCCTGACGCTTGGCTGCTACATCAGAACGCGTACA
CAATGGCCCCCGTGCGGAGCATAGGCTCGCCCAAGATGGTGCTGATCATG
GTCGGCCTCTCGGCTCTGATACCCGCCACCGCGGTGCCCTTGTGGCAAAA
ACGTCTGGTCACTACCGGCACCCAGTATTGGCTCGAAAGCGGTCCGACGG
TGAGGAGGGGACACGACTAGGGGGGATGTGAAGGATTCCACAAGTGCAAT
ATGTATCTTGTACGAGCGAGAATATCGACAAGTTGCATCTCCTGAGAATA
GCTCGGTGACATATTCCGAGAAAGTTCCGAGAGACGGTACGATAGCACTC
GTAGCCTGAGAGGGTATACCCACGTCGGTCAGTCTGTGCTGGGGCCGCAT
TAGAGCTCAGGCTACCGTGCAACGCCAGAAGCTTGGTCCGAGGTACACCT
GGTGGTGGAGCAACAGCTCTTCGGCTAGGGACTATTGCTGTTCGGTCCAT
GAGTAGTTTTCCTCCCGATTTAAGCAAGTACGGAGGTGCATACCTATAGT
AAATTAGGACCAAATATGCCAAACAGTATATATTGTACCCAACATATTAT
AATAGGAACCGATCTGGTGTGTCTGGCCGTACTGTACAACATTTTCGACC
TTCAGCCCCTGACATGTCAATAAAAGACTATACTTCTATTCTTACAAGGT
GTTCGGGCCAAAGTTAAAAATGCAACACACTCGAATGGAGTGGTAACAAA
GAGTAGCAGCTCAGAGTATAAGTACGTGTTTATATTATGTGAAAAGAAAG
CACGTCGTGGAAGGAAAGGGCTGGGACAATATCATAGGAAAATAGTTACT
TAAAGGTAGACCAAGCTTACTCCCCTGGAGTTTGTTTACGACTACCCAAT
TTCCGATTCTGTCTGAAAATTGCCGGACGGCAAATAAATAGATTCTTGAA
TACACTACTACACTATTGGGCAAAAAATTGGTCATGATTACTGTGTACCT
CCACAATAGAGCGACGAAGGAGGCATCTCCGCCCGTCGGATGCCCCGGAT
GGGCGTTCAATGGTGCTCTTGAAACAGCGGTGCAGGGCTGTAGCAGGCCG
TGAACCGCAACAAAGCAATGATATACTTGTACAATATAAGGCATTGTGCG
ACTGCTTGGTAGAGACAAGGCAAGGTTTGTGGGGCGTATGGCATTTGATG
CCTTGTGATTCGAAGCACAAGTTTTTTCCACCGTATTTTTCGTTTGGTTG
GGTTGCCGGCGAGAACTCTTCGCCATATACATTATATCGCAACGGATGTT
TTTTGTTGATTGATCTTCATCCGATCTGGAAGGCGCACAAACAAATGAGA
CGAAGTGGTCGACAAAGGTTTCATGGGCGATTTGAGGTAGGGATGCCCGG
TAAAACTACAGCATCGTCGAACGTTTTGGTACAACAAGCTCCCGCCTGCG
TACGACAAGGATGAGAACACACGCGAAAGGCGTATTCTCATTCGGTAGCG
GCCCTTGCACGCGCCGACCGTCATTCGCCACCGAGTCAGAAACAGACGTG
AATTGAAGACGCGCGAGAGTTCCTTGTGTTGTTTTTCTTGACAAAGTGTC
CAACGCGTTCTCCATCGTTTGACCTGCTTGCGTGCTTACATATCACACGC
GGTCTTAACCCTTCGAAGTATCACGTCATCGAAAGCCTGCATGAAGGGAC
GTGCACGTTCGTATTCAAACAGCGTGACCCCCCCCCCCCCCTGAAAAGTA
AAAACATCTTCATAAAACATAAAGCGAACGTTGAGGTCCCACCTTTCAAG
AGGGAAGATGGTCCAAGCTACACGTATGGAGGCTCACTTGTTTTATATTA
TGCTATGGTGTCGTATCATGTATGCTGTTATACCATTATGGTACAGGAGT
CTTTGTCCTGAGCTATATCCTGACCCCCCCGTGCCCCCCCTCCCCTCCGC
TTCCATTCGTTCCCCCGCTCTTCTCCAGCAATCCTCGAACGTCTGGGTGA
CGATCTCACAGTTCCTGCTGGAGCTGTGCATCGCGTGCGCCATGCTCTTC
GTGGTTGGCGTTCTTGTGGCCACCCGCCGCCTGGAACTGCGCAAGTGCTG
GCAGGCCCACGTGCGGATAAAGTACTACTTCGGGCTGTCCTGCATCGCCG
TCGCGGTCAACCTCGTCATCGGTGTGGGTGGCCTTCTCTGGATCTCGTGG
AAGCGCGACCCTCGCTTTCTGGTGGCGGGCTGGTGCATGCGCTACGTGCA
CATCGCCCTTGACACGATCGTCCTCTACGGCGTTCTGGTGAACACCTCCG
CGGCGGACAAGATGGCAGGGGACGGCGACCTGGAGCAGAACGCTTCCACG
GGCCAGGCGCACGACCCTAGCGACGGCCCCGGACCGGGCTGCTGTGAGAA
AGAAAAAAACGTACCCCCCGTCGACCGGAAAATTGGCCGCGTCGCCCCTG
TCATCCCTTGCAACGGCAGCGGTAGCAGCAGCCCAAAGAGTAATATGGTC
AGCAGCGCCAGTAAAATGTTGAGGGCGTGGCCGATGTTCAAGGGAGAGAG
GAAGGCCGAGGACTGCCCCGTGTGGCCACGAGAGCCGGCCGCCATCCACA
ACGGGATGTTCTCGGAAATCTGATCCGAGCAGGCGAAGGAAGGGAAGAAG
AAGGAGCGAAGGAAGGAGGAAGAGGAGGGAATGTGTAGCACGAGCTGTAA
TCGTCCCTGTCCGTTTATGTAACGCCGTACCGTTTGCTTTGTATTTCAAG
ATTCGTCGTGTGTTTTTGTCGAGAAGAAGGTTTTGTGTCTACTTGTACGT
ACGAGTTTTTAGTTTTGTTCTCGTCGGTACTTGCACGGCTTTGTCGGCAC
GCTTTGTATTGCCGTTAATTGCCGTTACATTTTTCGTCAGAATGTTATAC
TCCGTGCGGATAGGGTGTGGTACCTCAGCTCGCTGCGCGTCATAGAGCGA
CCCGGCGTGTTGTCGTTTTCTGGTATAGAACGTGTGCATTTCTTGTTCGT
GACGCCACGTCGCCGGGCCGCACTGCTCCGAGACTTGCAGGAGGAGCGAC
CTCCTTGGGGTATCGGGGGGTACGATGGCTGTAAAAATTATTAAAGTGTC
CAGGGCGCGTAAGGTGTAGATTGGCAGTAAGCAGTTCACGACCTCGCCTT
CAGTGCTCCCGTCGGGTGGTTTGCGGAATCGTAGCGTACGGCGACCAAAA
TACGCGTGGCGTTGTGCCGAAGCTAAAATCAATCGCGCGTCGACGAAACG
ATCACCGCTTGTAACGGGGAGGGGTTTACGATGCATTGACAGAAGTCACT
TTTCGACGTTGATATGCTCTGTGTAAGGGATTTGGTCAGGTAAAACAAAT
CCGTGTGAGAAATCCGTGTTCTACTGTTCATAAGGGATGTAAGAAAATTG
ACAGGCATTCGGTACGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9503:224..7191-

>mRNA_S-dermatodea_contig9503.17532.1 ID=mRNA_S-dermatodea_contig9503.17532.1|Name=mRNA_S-dermatodea_contig9503.17532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at S-dermatodea_contig9503:224..7191- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTTGGATCTGCCGGATCCCCTGGAAGCCTTCCCGCCGGAAGAGGC
GGCTTGCGACAACGATGTGTTCACCGTGGGGTTTCTACCCGGGGAGGGGG
CGGCCCTTGTGATTCGCTCGGTCGCTACCGTCATTACCGCCAGCATTTTC
TCGGCGTGGTGCGGTGACAGGTCGAAGATTCGACGGAAGCTGCTCTTCTT
CACGCACTGGGCTTCATGGTGTTGGATCTGCCGGATCCCCTGGAAGCCTT
CCCGCCGGAAGAGGCGGCTTGCGACAACGATGTGTTCACCGTGGGGTTTC
TACCCGGGGAGGGGGCGGCCCTTGTGATTCGCTCGGTCGCTACCGTCATT
ACCGCCAGCATTTTCTCGGCGTGGTGCGGTGACAGGTCGAAGATTCGACG
GAAGCTGCTCTTCTTCACGCACTGGGCTTCAGGGCTGGTCTACGTGTTGT
CGGAGTGGATCATGGCCATGATGATCCTTGCGTGCTGGTCCAAGGAAAGG
TTGGTTTGGGTCATCAAGCTCTTGAAGTTTGTCGAGCTCACGGCCGACAA
CATGCTGGCCATCACCAATCTCGCCATCTGCGTTCAACTTGCCCTCATCG
TCTCGAGGGCTGGTCTACGTGTTGTCGGAGTGGATCATGGCCATGATGAT
CCTTGCGTGCTGGTCCAAGGAAAGGTTGGTTTGGGTCATCAAGCTCTTGA
AGTTTGTCGAGCTCACGGCCGACAACATGCTGGCCATCACCAATCTCGCC
ATCTGCGTTCAACTTGCCCTCATCGTCTCGAACGCGTACACAATGGCCCC
CGTGCGGAGCATAGGCTCGCCCAAGATGGTGCTGATCATGGTCGGCCTCT
CGGCTCTGATACCCGCCACCGCGGTGCCCTTGTGGCAAAAACGTCTGGTC
ACTACCGGCACCCAGTATTGGCTCGAAAGCGGTCCGACGAACGCGTACAC
AATGGCCCCCGTGCGGAGCATAGGCTCGCCCAAGATGGTGCTGATCATGG
TCGGCCTCTCGGCTCTGATACCCGCCACCGCGGTGCCCTTGTGGCAAAAA
CGTCTGGTCACTACCGGCACCCAGTATTGGCTCGAAAGCGGTCCGACGCA
ATCCTCGAACGTCTGGGTGACGATCTCACAGTTCCTGCTGGAGCTGTGCA
TCGCGTGCGCCATGCTCTTCGTGGTTGGCGTTCTTGTGGCCACCCGCCGC
CTGGAACTGCGCAAGTGCTGGCAGGCCCACGTGCGGATAAAGTACTACTT
CGGGCTGTCCTGCATCGCCGTCGCGGTCAACCTCGTCATCGGTGTGGGTG
GCCTTCTCTGGATCTCGTGGAAGCGCGACCCTCGCTTTCTGGTGGCGGGC
TGGTGCATGCGCTACGTGCACATCGCCCTTGACACGATCGTCCTCTACGG
CGTTCTGGTGAACACCTCCGCGGCGGACAAGATGGCAGGGGACGGCGACC
TGGAGCAGAACGCTTCCACGGGCCAGGCGCACGACCCTAGCGACGGCCCC
GGACCGGGCTGCTGTGAGAAAGAAAAAAACGTACCCCCCGTCGACCGGAA
AATTGGCCGCGTCGCCCCTGTCATCCCTTGCAACGGCAGCGGTAGCAGCA
GCCCAAAGAGTAATATGGTCAGCAGCGCCAGTAAAATGTTGAGGGCGTGG
CCGATGTTCAAGGGAGAGAGGAAGGCCGAGGACTGCCCCGTGTGGCCACG
AGAGCCGGCCGCCATCCACAACGGGATGTTCTCGGAAATCTGACAATCCT
CGAACGTCTGGGTGACGATCTCACAGTTCCTGCTGGAGCTGTGCATCGCG
TGCGCCATGCTCTTCGTGGTTGGCGTTCTTGTGGCCACCCGCCGCCTGGA
ACTGCGCAAGTGCTGGCAGGCCCACGTGCGGATAAAGTACTACTTCGGGC
TGTCCTGCATCGCCGTCGCGGTCAACCTCGTCATCGGTGTGGGTGGCCTT
CTCTGGATCTCGTGGAAGCGCGACCCTCGCTTTCTGGTGGCGGGCTGGTG
CATGCGCTACGTGCACATCGCCCTTGACACGATCGTCCTCTACGGCGTTC
TGGTGAACACCTCCGCGGCGGACAAGATGGCAGGGGACGGCGACCTGGAG
CAGAACGCTTCCACGGGCCAGGCGCACGACCCTAGCGACGGCCCCGGACC
GGGCTGCTGTGAGAAAGAAAAAAACGTACCCCCCGTCGACCGGAAAATTG
GCCGCGTCGCCCCTGTCATCCCTTGCAACGGCAGCGGTAGCAGCAGCCCA
AAGAGTAATATGGTCAGCAGCGCCAGTAAAATGTTGAGGGCGTGGCCGAT
GTTCAAGGGAGAGAGGAAGGCCGAGGACTGCCCCGTGTGGCCACGAGAGC
CGGCCGCCATCCACAACGGGATGTTCTCGGAAATCTGA
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