mRNA_S-dermatodea_contig95.17525.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI) HSP 1 Score: 460 bits (1184), Expect = 1.740e-162 Identity = 235/273 (86.08%), Postives = 251/273 (91.94%), Query Frame = 1
Query: 1 MKSAVMAVACASGASAFVAPSLVKTARVA--APKTTMMSEAAGSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWAT 813
MKSAVMA AC S ASAFVAPSLV + RVA APKTTMM+E GSWWTPSDG+KS ALPWAD P+IGDG+MVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLA VGMVAPEL+QHPVGFSGF+FAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLT KYLYEDDLT LELKNK GK +LAGAAKIAPVT +K +VF DTV+PGDLGFDPLGLAANG+NPDYALAELKHARLAM+GFLGMAVQQ+VD NGGVLEQF+NWA+
Sbjct: 1 MKSAVMAAACVSSASAFVAPSLVSS-RVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA) HSP 1 Score: 261 bits (667), Expect = 1.500e-83 Identity = 148/295 (50.17%), Postives = 186/295 (63.05%), Query Frame = 1
Query: 1 MKSAVMAVACASGASAFVAPSLV------------KTARVAAP-----KTTMMSEAAGSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVF--------TDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
MK+A +A+ G +A+ APS+V K+A+ A P +T AAG+W+ D + S +LPW PVIGDG+M+GD GFDPL+L+ D+ WLR AELKHGR+CMLA VG+V PEL+QHPVGF GF F EFTQMNA AAL +VP+ GLAQIV+ C LIE+A+F N S + YED L+ LE + + FL G AK G +D GDLGFDPLGLAANGV DYALAE+KHARLAM+G LGM + Q + + GVL+Q L+WA
Sbjct: 1 MKAAAVALVACGGVAAYQAPSMVFGKKSGGAAAPAKSAKAAGPPAFLRETEPGQGAAGAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNA--GDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWA 292
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.380e-76 Identity = 128/223 (57.40%), Postives = 157/223 (70.40%), Query Frame = 1
Query: 136 PSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK--IAPVTADKGEVFT--DTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLE 792
P DG S ALPW+D PVIGDG + GD GFDP NL++ L WLR AELKHGR+CMLA VG+VAPEL QHP+GF G FAPEFT+MNAF AL++ P LGLAQI++ C L+E+ +F + Y+D LT +E ++ AG +FL G AK +A TA K + T D GD+GFDPLG A NGVNPDYALAELKH R+AM+G LGM +QQS + G+LE
Sbjct: 62 PVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.600e-73 Identity = 123/238 (51.68%), Postives = 158/238 (66.39%), Query Frame = 1
Query: 121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK------IAPV--TADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
G W+ D + S ALPW P IGDG++VGD GFDP L+ D+ WLR AELKHGR+ MLAT+GMV PEL+Q P GF GF FAPEF+++NA ALS+VP LGLAQI++ S +EVA+F+ ++ +ED+LT LE K G+ L+GAAK + P D G + VPGDLGFDP+G NG+NPDYALAE+KHARLAM+G GM +Q+ + G +L Q + WA
Sbjct: 62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA) HSP 1 Score: 232 bits (592), Expect = 2.860e-72 Identity = 118/228 (51.75%), Postives = 154/228 (67.54%), Query Frame = 1
Query: 121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAK--IAPVTADKGEVF--TDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLE 792
G W + SQALPW+D PVIGDGN+ GD GFDP L+ L WLR AE+KHGR+CMLA VG++APEL+Q+PVG+ G F P F +MNAF AL +VP LGLAQIV++ L+E+ S N + ++D LT++E + +G +FL G AK +A T K E T+ V PGDLGFDPLG A +G+ P++A AE+KHARLAM+G LGM +QQ+ G+LE
Sbjct: 56 GQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC) HSP 1 Score: 218 bits (556), Expect = 9.810e-67 Identity = 116/241 (48.13%), Postives = 158/241 (65.56%), Query Frame = 1
Query: 121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYED-------DLTALELKNKKAGKMQFLAGAA--KIAPVTADKGEVFTDTV--VPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
G W+ D + S ALPW P IGDGN+VGD GFDP L+ ++ WLR AELKHGR+CMLA+VG++APEL+Q P GF G DF P F++++ + AL+++P G+AQI+I +LIE+ T+KYLY DLT E + G +FLAG A ++ + ++ E D V VPGDLG+DPLGLA NG+ D+ALAE+KHARLAM+G LGM +Q ++ N +L+Q + WA
Sbjct: 62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELT------TAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC) HSP 1 Score: 192 bits (487), Expect = 1.270e-56 Identity = 109/231 (47.19%), Postives = 146/231 (63.20%), Query Frame = 1
Query: 154 SQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYED-------DLTALELKNKKAGKMQFLAGAAKIA------PVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNW 807
S ALPW P IGDG +VGD GFDPL L+ AD+ +LR AELKHGR+CMLA VG++APEL+Q P GF G +F P F++MN F AL ++P GL QI+I +LIE+ T+K+L++ D++ E + G +FLAG+A+ V +K +F+ VPGDLGFDPLGLA G+ D+ALAE+KH RLAM+ LGM +Q + G+LE +W
Sbjct: 53 SLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN------TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSR--VPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE) HSP 1 Score: 160 bits (404), Expect = 4.900e-44 Identity = 98/234 (41.88%), Postives = 125/234 (53.42%), Query Frame = 1
Query: 121 GSWWTPSDGSKSQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTV----VPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNWA 810
G+W+ D S++ PW I DG + GD GFDPL L+ D W+RTAELKHGRI MLA VG++ PELI P GF G +F P F + AL P LG+ QI ++ +LIE T KY+ KN M++L DKG F+D PG +GFDP G A NG+ D+A AE+KHARLAMVG GM +Q + + +LEQ WA
Sbjct: 84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQ------TLKYV----------KNP----MEYLQPYM-------DKGIKFSDEYFEKRTPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWA 289
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT) HSP 1 Score: 132 bits (332), Expect = 5.980e-34 Identity = 92/220 (41.82%), Postives = 118/220 (53.64%), Query Frame = 1
Query: 154 SQALPWADTPVIGDGNMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEF--TQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVDSNGGVLEQFLNW 807
S ++P+A P DG ++GD GFDPL L+N D+ WLR AE+KHGR+ MLA G + E + P S PE T ALS+ P LGLAQIV L LIE+ + + L + YED N KA AG+ PGDLG+DPLGL+A G+N DYA+AELKH RLAM+G GM + S+ S + EQ +W
Sbjct: 48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGFLVQEGYRLPGPASN----PELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDS------PNLKAP-----AGSGS-----------------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGM-LAGSLVSGKSISEQTYDW 233
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Match: A0A8J5XNK9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNK9_DIALT) HSP 1 Score: 120 bits (302), Expect = 6.460e-30 Identity = 77/208 (37.02%), Postives = 105/208 (50.48%), Query Frame = 1
Query: 154 SQALPWADTPVIGDGNMVGDAGFDPLNLAN--GPADLVWLRTAELKHGRICMLATVGMVAPELIQHPVGFSGFDFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTSKYLYEDDLTALELKNKKAGKMQFLAGAAKIAPVTADKGEVFTDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMVGFLGMAVQQSVD 771
S A+P+ P +G ++ D GFDP N P + R AELKHGR+CMLA +G VA ELI + + AP F ++N A+++VP LG+ QI++LC +IE N T Y AG+ +PGD+GFDPLGL+A G+ D+A+AE+KH RLAM+ FL VQ V
Sbjct: 35 SAAIPFVAKPKNLNGELLCDIGFDPAGFTNKASPEKIAKFREAELKHGRVCMLAVLGFVAQELI------APYQAAP-FNEVNPINAIAAVPALGILQIIVLCGIIE------NRTQGY---------------AGR-------------------------IPGDIGFDPLGLSAGGIKEDWAIAEIKHGRLAMIAFLAFQVQIKVS 189 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95.17525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig95.17525.1 >prot_S-dermatodea_contig95.17525.1 ID=prot_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp MKSAVMAVACASGASAFVAPSLVKTARVAAPKTTMMSEAAGSWWTPSDGSback to top mRNA from alignment at S-dermatodea_contig95:2250..5440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig95.17525.1 ID=mRNA_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3191bp|location=Sequence derived from alignment at S-dermatodea_contig95:2250..5440- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig95:2250..5440- >mRNA_S-dermatodea_contig95.17525.1 ID=mRNA_S-dermatodea_contig95.17525.1|Name=mRNA_S-dermatodea_contig95.17525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig95:2250..5440- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |