mRNA_S-dermatodea_contig94971.17524.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94971.17524.1
Unique NamemRNA_S-dermatodea_contig94971.17524.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.490e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKV 93
            L+EAKPEGEGRLLALLVNKLGDPDRKISSKV
Sbjct:  423 LLEAKPEGEGRLLALLVNKLGDPDRKISSKV 453
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-9
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSK 90
            L+EAKPEGEGRLLALLVNKLGDPDRKISSK
Sbjct:  203 LLEAKPEGEGRLLALLVNKLGDPDRKISSK 232
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A2P6VMC1_9CHLO (CCAAT enhancer-binding zeta n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMC1_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVG 96
            L+ AKPEGE +LL+ LVNKLGDPDRK++SKVG
Sbjct:  369 LLSAKPEGEAKLLSGLVNKLGDPDRKLASKVG 400
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A7R9Y8A0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8A0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.110e-6
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKV 93
            L+ AKPEGE RLLA+LVNKLGDP+RK++++V
Sbjct:   14 LLSAKPEGEARLLAILVNKLGDPERKVTARV 44
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A2P6TET0_CHLSO (CCAAT enhancer-binding zeta n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TET0_CHLSO)

HSP 1 Score: 50.8 bits (120), Expect = 2.870e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVG 96
            L+ AKPE E RLL  LVNKLGDPDRK++SKVG
Sbjct:  373 LLSAKPEQEARLLGALVNKLGDPDRKLASKVG 404
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A0D2MHH9_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MHH9_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 2.900e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVGGWVG 108
            L+ AKPEGE RLLA LVNKLGDP RK++S  G  +G
Sbjct:  368 LLSAKPEGEARLLAALVNKLGDPSRKVASNAGFLLG 403
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.880e-5
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSK 90
            L+EAKP GE +LLA+LVNK GDPDRK+++K
Sbjct:  395 LLEAKPTGEAQLLAILVNKFGDPDRKVANK 424
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A3M7KZN0_AUXPR (CBF domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZN0_AUXPR)

HSP 1 Score: 48.5 bits (114), Expect = 1.880e-5
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVG 96
            L+  KPE E RLL+ LVNKLGDPDRK++SKVG
Sbjct:  273 LLSKKPEQEQRLLSALVNKLGDPDRKLASKVG 304
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A7S0WGI7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WGI7_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 1.890e-5
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVG 96
            L+  KPEGE RLLA LVNKLGDP RK++SK G
Sbjct:  187 LLRQKPEGEARLLAGLVNKLGDPSRKLASKAG 218
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BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Match: A0A1Y1I0G5_KLENI (CAATT-binding transcription factor n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0G5_KLENI)

HSP 1 Score: 47.8 bits (112), Expect = 3.520e-5
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 LVEAKPEGEGRLLALLVNKLGDPDRKISSKVG 96
            L+ AKPE E +LLA LVNKLGDP+RK++SK G
Sbjct:  421 LLVAKPEQEAKLLAALVNKLGDPERKVASKAG 452
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94971.17524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI4.490e-1096.77CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE2.140e-996.67Reverse transcriptase domain-containing protein n=... [more]
A0A2P6VMC1_9CHLO1.120e-675.00CCAAT enhancer-binding zeta n=1 Tax=Micractinium c... [more]
A0A7R9Y8A0_9STRA2.110e-670.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P6TET0_CHLSO2.870e-675.00CCAAT enhancer-binding zeta n=1 Tax=Chlorella soro... [more]
A0A0D2MHH9_9CHLO2.900e-666.67Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A835ZC94_9STRA1.880e-570.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M7KZN0_AUXPR1.880e-571.88CBF domain-containing protein n=4 Tax=Auxenochlore... [more]
A0A7S0WGI7_9CHLO1.890e-571.88Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A1Y1I0G5_KLENI3.520e-568.75CAATT-binding transcription factor n=1 Tax=Klebsor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94971contigS-dermatodea_contig94971:236..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue8.6e-08
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.1121123-CDS-S-dermatodea_contig94971:235..3431622925412.1121123-CDS-S-dermatodea_contig94971:235..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94971 236..343 -
1694079916.0796022-CDS-S-dermatodea_contig94971:235..3431694079916.0796022-CDS-S-dermatodea_contig94971:235..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94971 236..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94971.17524.1prot_S-dermatodea_contig94971.17524.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94971 236..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94971.17524.1

>prot_S-dermatodea_contig94971.17524.1 ID=prot_S-dermatodea_contig94971.17524.1|Name=mRNA_S-dermatodea_contig94971.17524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
LVEAKPEGEGRLLALLVNKLGDPDRKISSKVGGWVG
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mRNA from alignment at S-dermatodea_contig94971:236..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94971.17524.1 ID=mRNA_S-dermatodea_contig94971.17524.1|Name=mRNA_S-dermatodea_contig94971.17524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at S-dermatodea_contig94971:236..343- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGTTGAAGCCAAGCCTGAAGGAGAAGGCCGCCTGCTGGCGCTCCTGGT
GAACAAGCTCGGTGACCCCGATAGGAAAATTAGCTCAAAGGTGGGTGGGT
GGGTGGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig94971:236..343-

>mRNA_S-dermatodea_contig94971.17524.1 ID=mRNA_S-dermatodea_contig94971.17524.1|Name=mRNA_S-dermatodea_contig94971.17524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig94971:236..343- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGTTGAAGCCAAGCCTGAAGGAGAAGGCCGCCTGCTGGCGCTCCTGGT
GAACAAGCTCGGTGACCCCGATAGGAAAATTAGCTCAAAGGTGGGTGGGT
GGGTGGGTCTGGTTGAAGCCAAGCCTGAAGGAGAAGGCCGCCTGCTGGCG
CTCCTGGTGAACAAGCTCGGTGACCCCGATAGGAAAATTAGCTCAAAGGT
GGGTGGGTGGGTGGGT
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