mRNA_S-dermatodea_contig9493.17523.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9493.17523.1
Unique NamemRNA_S-dermatodea_contig9493.17523.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9493.17523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9493contigS-dermatodea_contig9493:4348..7473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2955
Cds size750
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9493.17523.1prot_S-dermatodea_contig9493.17523.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9493 4348..5270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.0543811-CDS-S-dermatodea_contig9493:4347..47771622925412.0543811-CDS-S-dermatodea_contig9493:4347..4777Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 4348..4777 +
1694079916.049354-CDS-S-dermatodea_contig9493:4347..47771694079916.049354-CDS-S-dermatodea_contig9493:4347..4777Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 4348..4777 +
1622925412.0690114-CDS-S-dermatodea_contig9493:4950..52701622925412.0690114-CDS-S-dermatodea_contig9493:4950..5270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 4951..5270 +
1694079916.0612345-CDS-S-dermatodea_contig9493:4950..52701694079916.0612345-CDS-S-dermatodea_contig9493:4950..5270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 4951..5270 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.082648-UTR-S-dermatodea_contig9493:5270..74731622925412.082648-UTR-S-dermatodea_contig9493:5270..7473Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9493 5271..7473 +
1694079916.069925-UTR-S-dermatodea_contig9493:5270..74731694079916.069925-UTR-S-dermatodea_contig9493:5270..7473Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9493 5271..7473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9493.17523.1

>prot_S-dermatodea_contig9493.17523.1 ID=prot_S-dermatodea_contig9493.17523.1|Name=mRNA_S-dermatodea_contig9493.17523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=250bp
CRQLESPERGAFGPAPRLSRTFERGGPGRRSAEKKDDERWDERENAGAVR
AADAKAVEYDSVLPRLEEPSPRIATNSSLPTGKLNGWASVNSIEAWSDNN
SKSPASDLGSDHMTCSTQWSVSQFSGGSGSTKSNAGEDRSFVSANPPPTR
RKTFCAFTTSPRPPVPAVAEAKSESLAPFAVAVSPSVSRDSGDLWAAGSQ
KKTSRVSTRRASGTGTDENEAGGTPSRNARLDGLRARSASAPIIWDDQP*
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mRNA from alignment at S-dermatodea_contig9493:4348..7473+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9493.17523.1 ID=mRNA_S-dermatodea_contig9493.17523.1|Name=mRNA_S-dermatodea_contig9493.17523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3126bp|location=Sequence derived from alignment at S-dermatodea_contig9493:4348..7473+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTCGCCAGTTGGAGTCGCCTGAGCGAGGCGCCTTCGGCCCCGCACCACG
CCTCTCCAGGACCTTCGAGAGAGGGGGCCCTGGACGGCGAAGCGCTGAGA
AAAAAGACGACGAGCGATGGGATGAGCGGGAGAATGCCGGCGCGGTCAGG
GCTGCGGATGCCAAGGCAGTCGAGTATGACAGCGTGTTGCCGCGGCTCGA
AGAGCCGAGCCCACGGATTGCGACGAACTCGTCGCTTCCGACCGGGAAGC
TGAACGGCTGGGCAAGCGTCAATAGTATTGAGGCCTGGTCGGACAACAAT
AGTAAGAGTCCGGCATCCGACCTCGGAAGCGACCACATGACTTGTTCCAC
GCAGTGGTCAGTGTCGCAGTTCTCGGGGGGCTCGGGCTCGACGAAGTCAA
ATGCGGGAGAGGACCGCAGCTTCGTCAGCGGTAAGTGCTGTCCATGGAGG
AGTCTTGCGAAGGATCTTGTACCGGCCAACTTGTTGTAGCCCGCCTTCAG
GGCGGCATGGTAGTCCCCGACCTGTCGAGAGGTACTTGTAGCTCATTAAA
CCCCATCTTGCTGACCTGCTTTGGTCGCGTTCTGTCCTTCTGTACTTGTG
CAGCGAACCCACCTCCAACTCGACGAAAAACTTTCTGCGCTTTCACAACG
AGCCCGAGACCACCCGTGCCAGCTGTGGCGGAGGCGAAAAGCGAATCCTT
GGCACCCTTCGCAGTAGCTGTTTCTCCTAGCGTCAGTAGAGACAGTGGGG
ACCTCTGGGCTGCTGGCAGCCAGAAAAAGACCAGTCGGGTCAGTACCAGG
CGAGCAAGCGGCACCGGAACTGACGAGAACGAAGCGGGTGGAACTCCTAG
CCGAAATGCACGGCTCGACGGCCTTCGCGCCAGGTCAGCGTCCGCTCCCA
TTATCTGGGACGATCAGCCATAACGTAAGGAGGGTGAAGGAAGAGAAGCG
TACCAAGAGCCAGCGCGATTTGCTGAGGGTTAAGCCTTGAAACTTGCCGG
TAGGGGACGGTGGGAGGACACGGTCGCCGTAGTGGATGTATCACCTTTGC
TGCCGTGTTCTTGCTCTTCCGCCGTGATGTGAGGAGAGCCAGCGTGCCGC
TTGAGATAGGTGTGGTTTGCGGCTTCGATTACACTGGCAGCTTTATCGCT
GCACACGAGCGGCTGCGTGTGCGTACCTGCTGTCGAGGTGGCGCGTGCGT
GCACACACGTACGTAACGTGTATTCAGGCGCGATGCCTTATGTGGTGCGC
TGCGCGAAAATCGCACGTTTGTTTCGTTCGGGAGACTTTTGGTGCAAGGT
CATAACCTTGTCTTGAGGGGGTGAACGGTGGTGGCCTCTTTGCACCCTTG
CTCGCGTGTGCGGCTCGTGTTGCAACACATGTCGGCTTGAATGTCGAAAA
AATCCAAGGTGGCCAGGTCGTGGTTTGAGCATTTTACCGTTTTTTAACGT
AATTCAGTGAAGCGTGATCCCCCCCCCCCATTTTGAGGTGAAATACACGA
CCGATCAACACCCTCTCGAGGTATCGCGGCAACGGAGGTCGTCCTTTTCG
GATCCGACCCCGTGCCATGGGAGTTGTAAGGAAGACATGAAGTCGGACGC
AGCCTTCGTTTTAGTGATGGATGGAGACGAGCCGGTCTCTCTCGCAATCT
CATCACGGATCAGTTGTGCTTTTTAATTTTACAATTGCTTTGGGGGTCAA
GCAGCGTTCCTGTGATGTATTGAGACAGAGTTACGCGCTAGGGCAGGTGC
GCGTCTCCTTGTGCCTCCGAGGCTCGCGCAACTTGTGGAGTTTGTCGGCA
TTGTACCCCCTCCCAACCCCGCGCTCTCGCACGTGAATGATTATGTTGAC
CCCGATAGATAGTACAGATGTCGGTATCAGGGGCGTCGCACGCCATGAAC
GTGAACTTTTATGTTTCCAATCTATTTTGGGTCGTTTATTTCGTGGTGCA
GTTTTGTGGCAGATGGGTAGTTGTTTCTGTGGGTTGTCTAGGTCAGTGCC
TGTGTGCTGGAGTTAGGTCGTTGATCGGTATTGTAGCTGTAGCTGGGTCG
GGGGAGAGGGACCGAAGGGGATCGCCCCAGCATGAACAGTACCGTTATAT
CTACAGTCTCTGGCGTTGGGCGGTGTGCAGAGTGGGTCTTTTGTTCTGTT
CCGGTGTCATCGTCTGTTGTGTACGTGTTTTCCTTGTCGATGGGCTCCTT
GTTTCCATGTGTCAAATTATCTGCTGTAAATGTTGCGTGCGTCGAGTGGG
CCTTCCTTCATCACGGAGATTTTTTATTCTCCACACACCAAAATCAAGAT
GTATCGGTCGCGCGAAACGGTGTGGTTTAGTCCGCAGCCTTTGGACCGCC
GCCAATGAAACGGTGTCGATATTTCGTTGAATATGCGCCAACTATTATAG
CAGGGCTACGCTGCACTGTACGTAGTGGTAGAACTTTAGTGCAAATCCCT
TGTGTGATATCGCCGTCCCCGAGGTACACACGGTGCCTCGTAGCAGGCCA
AGGCCGCCGTCCGATTTGAACTTTTGCGCGAGTCTTGATTTCCGCTTACT
TTGGTTGAAGCGGGTCCCCTCGCGCCTTTTCGTAAAAGCAGTATGCCCGT
AAATGTGCTCAAAGTTCGCTGACGTTCTCGTTCGTGTAGGAAATGTCAAT
TTTGAAATCAGGTTCAGCCCGGCTGGGATCCCGGGAGGCCAATGCACCGT
CCTCGCGTTATTAGCTAAAAAATGAAAATTGGGAAACGATTTGCGGTGGT
ACCGCATGTATGTATTTTTTACCATGGTTTGGCAGTCACAATTCAACGCA
CGCGCACCCCACCGGGCTAGGTATTAATAGAGTATTAATGGAAGGGAGAG
GGTACGAAAACACCGGCTGTGATTGATTTATTTGTTGATGGATTTGCTCT
GCTGCGTCTGGGCTATTTCTGTTGCAATTACTGTCGATTGTTTTTTATTT
AGTTGCTTGTTTAGTGAAGAAGTTGTCGACTAACGATGCGCTGGTGCTTC
GCACGAGAGAGAGAGAGTAAGTGGGTGTTAATTTATCGAGCCGATTGTGC
TCGGGACTACCTGTATAATAGTCCAAGAGTGGTGCACGATGTCGGCCAAC
GATAATCAATACCTTACACATGTGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9493:4348..7473+

>mRNA_S-dermatodea_contig9493.17523.1 ID=mRNA_S-dermatodea_contig9493.17523.1|Name=mRNA_S-dermatodea_contig9493.17523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at S-dermatodea_contig9493:4348..7473+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTCGCCAGTTGGAGTCGCCTGAGCGAGGCGCCTTCGGCCCCGCACCACG
CCTCTCCAGGACCTTCGAGAGAGGGGGCCCTGGACGGCGAAGCGCTGAGA
AAAAAGACGACGAGCGATGGGATGAGCGGGAGAATGCCGGCGCGGTCAGG
GCTGCGGATGCCAAGGCAGTCGAGTATGACAGCGTGTTGCCGCGGCTCGA
AGAGCCGAGCCCACGGATTGCGACGAACTCGTCGCTTCCGACCGGGAAGC
TGAACGGCTGGGCAAGCGTCAATAGTATTGAGGCCTGGTCGGACAACAAT
AGTAAGAGTCCGGCATCCGACCTCGGAAGCGACCACATGACTTGTTCCAC
GCAGTGGTCAGTGTCGCAGTTCTCGGGGGGCTCGGGCTCGACGAAGTCAA
ATGCGGGAGAGGACCGCAGCTTCGTCAGCGTGTCGCCAGTTGGAGTCGCC
TGAGCGAGGCGCCTTCGGCCCCGCACCACGCCTCTCCAGGACCTTCGAGA
GAGGGGGCCCTGGACGGCGAAGCGCTGAGAAAAAAGACGACGAGCGATGG
GATGAGCGGGAGAATGCCGGCGCGGTCAGGGCTGCGGATGCCAAGGCAGT
CGAGTATGACAGCGTGTTGCCGCGGCTCGAAGAGCCGAGCCCACGGATTG
CGACGAACTCGTCGCTTCCGACCGGGAAGCTGAACGGCTGGGCAAGCGTC
AATAGTATTGAGGCCTGGTCGGACAACAATAGTAAGAGTCCGGCATCCGA
CCTCGGAAGCGACCACATGACTTGTTCCACGCAGTGGTCAGTGTCGCAGT
TCTCGGGGGGCTCGGGCTCGACGAAGTCAAATGCGGGAGAGGACCGCAGC
TTCGTCAGCGCGAACCCACCTCCAACTCGACGAAAAACTTTCTGCGCTTT
CACAACGAGCCCGAGACCACCCGTGCCAGCTGTGGCGGAGGCGAAAAGCG
AATCCTTGGCACCCTTCGCAGTAGCTGTTTCTCCTAGCGTCAGTAGAGAC
AGTGGGGACCTCTGGGCTGCTGGCAGCCAGAAAAAGACCAGTCGGGTCAG
TACCAGGCGAGCAAGCGGCACCGGAACTGACGAGAACGAAGCGGGTGGAA
CTCCTAGCCGAAATGCACGGCTCGACGGCCTTCGCGCCAGGTCAGCGTCC
GCTCCCATTATCTGGGACGATCAGCCATAACGAACCCACCTCCAACTCGA
CGAAAAACTTTCTGCGCTTTCACAACGAGCCCGAGACCACCCGTGCCAGC
TGTGGCGGAGGCGAAAAGCGAATCCTTGGCACCCTTCGCAGTAGCTGTTT
CTCCTAGCGTCAGTAGAGACAGTGGGGACCTCTGGGCTGCTGGCAGCCAG
AAAAAGACCAGTCGGGTCAGTACCAGGCGAGCAAGCGGCACCGGAACTGA
CGAGAACGAAGCGGGTGGAACTCCTAGCCGAAATGCACGGCTCGACGGCC
TTCGCGCCAGGTCAGCGTCCGCTCCCATTATCTGGGACGATCAGCCATAA
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