mRNA_S-dermatodea_contig9493.17522.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9493.17522.1
Unique NamemRNA_S-dermatodea_contig9493.17522.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9493.17522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9493contigS-dermatodea_contig9493:3156..4197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size505
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9493.17522.1prot_S-dermatodea_contig9493.17522.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9493 3164..4197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.975744-UTR-S-dermatodea_contig9493:3155..31631622925411.975744-UTR-S-dermatodea_contig9493:3155..3163Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9493 3156..3163 +
1694079916.013068-UTR-S-dermatodea_contig9493:3155..31631694079916.013068-UTR-S-dermatodea_contig9493:3155..3163Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9493 3156..3163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.9927914-CDS-S-dermatodea_contig9493:3163..33451622925411.9927914-CDS-S-dermatodea_contig9493:3163..3345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3164..3345 +
1694079916.0224214-CDS-S-dermatodea_contig9493:3163..33451694079916.0224214-CDS-S-dermatodea_contig9493:3163..3345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3164..3345 +
1622925412.0094519-CDS-S-dermatodea_contig9493:3552..36091622925412.0094519-CDS-S-dermatodea_contig9493:3552..3609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3553..3609 +
1694079916.0314193-CDS-S-dermatodea_contig9493:3552..36091694079916.0314193-CDS-S-dermatodea_contig9493:3552..3609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3553..3609 +
1622925412.0220132-CDS-S-dermatodea_contig9493:3941..41971622925412.0220132-CDS-S-dermatodea_contig9493:3941..4197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3942..4197 +
1694079916.040213-CDS-S-dermatodea_contig9493:3941..41971694079916.040213-CDS-S-dermatodea_contig9493:3941..4197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9493 3942..4197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9493.17522.1

>prot_S-dermatodea_contig9493.17522.1 ID=prot_S-dermatodea_contig9493.17522.1|Name=mRNA_S-dermatodea_contig9493.17522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=165bp
MPSTLRISQLSTFPPEWIFGRRSSDEWGCSSGSSSSSGAPSTNSGSVCDS
DDDESGKHATGEPEFSNFGEDQQRRASSTSSSDNIYTTRAFVRSPQRPRS
SSAVRSPQTPRSPSVVRSSPSSRVRLPSPLPRNATPRATILTDLCAPCSP
SVRAQASPVPQFPTS
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mRNA from alignment at S-dermatodea_contig9493:3156..4197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9493.17522.1 ID=mRNA_S-dermatodea_contig9493.17522.1|Name=mRNA_S-dermatodea_contig9493.17522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1042bp|location=Sequence derived from alignment at S-dermatodea_contig9493:3156..4197+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGCGCCATGCCTTCGACCCTGAGGATCAGCCAATTGTCGACGTTTCCG
CCAGAGTGGATTTTTGGACGCAGAAGCAGCGATGAGTGGGGCTGCAGCAG
CGGTAGCAGCAGTAGCAGCGGTGCCCCCAGCACCAACTCCGGCAGTGTGT
GCGACAGCGACGATGACGAGAGTGGCAAACATGCCACCGGGTGAGTTTCG
CGTGAGCGAGGCGTGTGGATGCGCCGCTTGTTGGGTCGAGGGCAGGCGAG
GTACATATATGTAGGTGGGAATGCGACGTTAGGAGGGTGAATCTAGAGGG
GACCCTGAAGGTCGCGTTCTACAAGCTTTTTTCCTGTCCGCGATCCCATG
GAAGCGATTTGTACCGCTGATGAAAGCCTTGCCTGTTTCCTCGACAGGGA
GCCGGAATTCAGCAACTTTGGGGAGGATCAACAGCGGCGGGCATCTTCTA
CATCGTGAGTTTACTGCCGGCATGTGTGAAAATATTGCGAAAGTACTATT
AATAGTCGTTACGTGTCTCGTCTCGAGACTGGCACACGCTCTTGATTCGC
CGCCACATTTTTCACCGACCGATCGATGCTGTTATTTTTCGTGCTCACCG
GAAGCCGTCAACTGCTCACTGTCTTTCCATATTGCGGGCCATATAGGTTA
TTCTGTCTCGACCCAGAGCGGCCACGACCCGACAAGAACCCGTCCATAAG
GCACATGTCACATATCACATCTCCAGCCGTCCCCTGTTACACCTAAACGC
CGCTCCCTCCCGTGTGATCCCTGCTTTCGCCCGCAGGTCCTCAGATAACA
TCTACACCACCCGCGCTTTCGTGCGGTCCCCGCAAAGACCGCGTTCATCA
AGCGCTGTGCGGTCTCCACAAACGCCGCGTTCACCAAGCGTGGTGCGGTC
CTCCCCGTCATCACGGGTACGGCTACCATCTCCTCTGCCGCGTAACGCCA
CGCCTCGAGCCACGATACTGACGGACCTCTGCGCGCCTTGCTCCCCTTCC
GTCCGCGCTCAAGCGTCCCCGGTGCCGCAATTCCCCACGTCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9493:3156..4197+

>mRNA_S-dermatodea_contig9493.17522.1 ID=mRNA_S-dermatodea_contig9493.17522.1|Name=mRNA_S-dermatodea_contig9493.17522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig9493:3156..4197+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTCGACCCTGAGGATCAGCCAATTGTCGACGTTTCCGCCAGAGTG
GATTTTTGGACGCAGAAGCAGCGATGAGTGGGGCTGCAGCAGCGGTAGCA
GCAGTAGCAGCGGTGCCCCCAGCACCAACTCCGGCAGTGTGTGCGACAGC
GACGATGACGAGAGTGGCAAACATGCCACCGGATGCCTTCGACCCTGAGG
ATCAGCCAATTGTCGACGTTTCCGCCAGAGTGGATTTTTGGACGCAGAAG
CAGCGATGAGTGGGGCTGCAGCAGCGGTAGCAGCAGTAGCAGCGGTGCCC
CCAGCACCAACTCCGGCAGTGTGTGCGACAGCGACGATGACGAGAGTGGC
AAACATGCCACCGGGGAGCCGGAATTCAGCAACTTTGGGGAGGATCAACA
GCGGCGGGCATCTTCTACATCGGAGCCGGAATTCAGCAACTTTGGGGAGG
ATCAACAGCGGCGGGCATCTTCTACATCGTCCTCAGATAACATCTACACC
ACCCGCGCTTTCGTGCGGTCCCCGCAAAGACCGCGTTCATCAAGCGCTGT
GCGGTCTCCACAAACGCCGCGTTCACCAAGCGTGGTGCGGTCCTCCCCGT
CATCACGGGTACGGCTACCATCTCCTCTGCCGCGTAACGCCACGCCTCGA
GCCACGATACTGACGGACCTCTGCGCGCCTTGCTCCCCTTCCGTCCGCGC
TCAAGCGTCCCCGGTGCCGCAATTCCCCACGTCAGTCCTCAGATAACATC
TACACCACCCGCGCTTTCGTGCGGTCCCCGCAAAGACCGCGTTCATCAAG
CGCTGTGCGGTCTCCACAAACGCCGCGTTCACCAAGCGTGGTGCGGTCCT
CCCCGTCATCACGGGTACGGCTACCATCTCCTCTGCCGCGTAACGCCACG
CCTCGAGCCACGATACTGACGGACCTCTGCGCGCCTTGCTCCCCTTCCGT
CCGCGCTCAAGCGTCCCCGGTGCCGCAATTCCCCACGTCA
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