mRNA_S-dermatodea_contig9482.17515.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9482.17515.1
Unique NamemRNA_S-dermatodea_contig9482.17515.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.640e-37
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLESDWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            M+VS SS+R GQMKG  G +QL G+PL S+ A N GINVRF N ESD V G+D+FL+WE+ATGEWVNV I+TTFGKSM V  SGAVEG A+WPS YKP+A
Sbjct:  234 MKVSGSSSRLGQMKGVSGGFQLLGNPLFSVTANNDGINVRFNNDESDIVEGMDEFLSWEDATGEWVNVEIQTTFGKSMEVHFSGAVEGKAVWPSSYKPVA 333
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 6.570e-37
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLESDWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            M+VS SSTR GQMKG  G +QL G+PL S+ A N GINVRF N ESD V G+D  L+WE+ATGEWV+V I TTFGKSM V  SGAVEG A+WPS YKP+A
Sbjct:  136 MKVSGSSTRIGQMKGVSGGFQLKGNPLFSVTANNNGINVRFNNEESDKVEGMDDTLSWEDATGEWVHVEIRTTFGKSMEVYFSGAVEGKAVWPSSYKPVA 235
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 4.960e-36
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLESDWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            M+VS SSTR GQMKG  G +QL G+PL S+ A N GINVRF N + D V G+D+FL+WE+ATGEWV+V I+TTFGKSM V  SGAV+G A+WPS YKP+A
Sbjct:  357 MKVSGSSTRLGQMKGVSGGFQLKGNPLFSVTANNNGINVRFNNEDDDNVEGMDEFLSWEDATGEWVHVEIQTTFGKSMEVYFSGAVKGKAVWPSSYKPVA 456
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.630e-31
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLESDWVTGLDQFLTWEEATGEWVNVRIETTFGKSMT-VALSGAVEGTAIWPSEYKPIA 300
            M+VS SSTR GQMKG  G +QL G+PL S+ A N GINVRF N + D V G+D+FL+WE+ATGEWV+V I+TTFG+    V  SGAV G A+WP  YKP+A
Sbjct:  416 MKVSGSSTRLGQMKGVSGGFQLKGNPLFSVTANNNGINVRFNNEDDDNVEGMDEFLSWEDATGEWVHVEIQTTFGEVHGGVYFSGAVNGKAVWPPSYKPVA 516
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.040e-28
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLES--DWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            M+V++  T  GQ+KGS G Y + GDP+ S+ A   G++VRF+NLES  D+  GLD  L W+ ATGEWV+V I TTFG+SM V +SGAV GTA+WPS+ KP+A
Sbjct:  235 MQVATRFTHLGQLKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVNISGAVSGTAVWPSDLKPVA 336
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.370e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSYGDYQLSG-----DPLLSIAATNGGINVRFANLE--SDWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            MRVSS  T  GQ+KG+ G  ++ G     DP+  + A   G+ VRF+N E   ++  GL + L W+++TG+WV+V+I TTFG+ M V LSGAVEG A+WPS  KP+A
Sbjct:  106 MRVSSKYTHLGQLKGTIGKGKVKGTMIKLDPIYCLTANKDGLMVRFSNREMPDNFHEGLSKHLNWKDSTGQWVHVKIVTTFGEFMVVRLSGAVEGRAVWPSNLKPVA 212
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BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.710e-19
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 MRVSSSSTRFGQMKGSY-GDYQLSGDPLLSIAATNGGINVRFANLES---DWVTGLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA 300
            M++    T  GQ+KG+Y G   + GDP++SI+A   G++VRF+N++    D+ T    +  WE+ATGEWV+V I+T FG+ M V  +G V G  +WP +  P+A
Sbjct:  175 MKLGKRFTHIGQIKGAYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFMEVEFAGGVSGKFVWPKDKTPVA 278
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9482.17515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LDH2_ECTSI1.640e-3768.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH3_ECTSI6.570e-3767.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE4.960e-3665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBB3_9PHAE5.630e-3160.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ0_9PHAE3.040e-2855.88WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAW5_9PHAE4.370e-2247.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5S3_9PHAE9.710e-1941.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9482contigS-dermatodea_contig9482:5749..7739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.8e-31
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000750.1
Exons2
Model size302
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.4416592-CDS-S-dermatodea_contig9482:5748..59851622925411.4416592-CDS-S-dermatodea_contig9482:5748..5985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 5749..5985 +
1694079915.6296453-CDS-S-dermatodea_contig9482:5748..59851694079915.6296453-CDS-S-dermatodea_contig9482:5748..5985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 5749..5985 +
1622925411.4635246-CDS-S-dermatodea_contig9482:7676..77391622925411.4635246-CDS-S-dermatodea_contig9482:7676..7739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 7677..7739 +
1694079915.6477227-CDS-S-dermatodea_contig9482:7676..77391694079915.6477227-CDS-S-dermatodea_contig9482:7676..7739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9482 7677..7739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9482.17515.1prot_S-dermatodea_contig9482.17515.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9482 5749..7739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9482.17515.1

>prot_S-dermatodea_contig9482.17515.1 ID=prot_S-dermatodea_contig9482.17515.1|Name=mRNA_S-dermatodea_contig9482.17515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MRVSSSSTRFGQMKGSYGDYQLSGDPLLSIAATNGGINVRFANLESDWVT
GLDQFLTWEEATGEWVNVRIETTFGKSMTVALSGAVEGTAIWPSEYKPIA
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mRNA from alignment at S-dermatodea_contig9482:5749..7739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9482.17515.1 ID=mRNA_S-dermatodea_contig9482.17515.1|Name=mRNA_S-dermatodea_contig9482.17515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1991bp|location=Sequence derived from alignment at S-dermatodea_contig9482:5749..7739+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGTTTCCAGTTCCTCCACGCGTTTCGGGCAAATGAAGGGCTCGTA
CGGCGATTACCAGCTAAGCGGCGACCCCTTGCTCTCCATTGCCGCCACCA
ACGGTGGTATCAACGTTCGGTTTGCGAACCTGGAGTCGGACTGGGTAACG
GGCCTGGATCAGTTCCTCACGTGGGAGGAGGCTACCGGGGAATGGGTCAA
CGTGCGGATCGAAACTACGTTCGGGAAGTCCATGACGGTGAGTGAATTGC
GGAGCAACGCTTCTGTTGATTGATTGATTGATTGGTTCATTGGTTGATTG
ATCGATTGGTTGATTGATTGATTGGCTGATTGATTGATTGATTGGTCGAT
TGATTGATTAATTGGTTCCTTGAAGTGATGAATTGATTGATGGATTGATT
GATTGACTGAGTGATTAATTTGATTGATTGATTGATTGATTGATTAATTG
ATTGATTGATTGATTGATTGATTGATTGGTTGATTGGTTGATTGATTAAT
TGCCTGATTGGTTGATTTGTACAGGTATAGCCGACCGGCTGATTCCGACC
CCGACTTGTGGTCAGATACCTCCGACCTTGGGTCTGCGAAACGAAAAAAA
CACATCGGGGACAACTCCAGCATCGCCACCGTATACGTATTTTGCTGCGG
GTAACGTCAATGCGGCGAGGATGAATATCATAGATGAGCACGTTTTATCT
GGCGGGGAGGTCCTTTATGCTGGTGGCGCCAGAGGGCACGGCTGGCTGCC
CGAGAGGTTGCTGTCCCAACCCCGGTTTGGAATACACTTGGAAATAACCC
ACAAAATGTATCCTATCCTCCTCAAGCGCCTAGAAATTCGGTGGACCATT
CCAGGTAAGACAAGACGGCGGTGGTATTGCCCTCTTGCTAGCCCCACCTT
CCCGAATCGTTTCCGCATTCATGACTTCCGTTGATTGATTGATTGATTGG
TTGATTGATTGACCGATTGGTTGTTGATTGGTTGGTTGGTTGGTTGGTTG
ATTGATTGATTGGTTGATTAATTATCACACTTATAACCTACCGCGATCGG
CCCGCCAATGGTTGCCGATCCTGCTATTACGGAGGTAGACAGTAATCGGG
ACCAAATATCACGACCATAAATAATATACGCAATAAGTGCGAATTTGAAC
ACCCAAACAACACGAATGACAAATTACACTCGTGAAAAAAAAACAACACA
AAAACGCCTGGCCTATAGGACAAACACCCCCGACCGTGAATATCAAACAT
ACCCAATCGTTCCGGGCTGGGTTGTCTTTGTCTTGCTAAGTTAAGATTTT
GTGACGAATTCGGACCTGTCAGTATACTATTTAATAGTATTAATATGGTC
CTCCGTAATATACTAGTATTACTATGGTCCTCCGTAATATACTAATATCA
CTATGGTCCTCCGTAATACTATAATAATACTATCATAACAGTGGTCAGAT
GATAAAAAATCGGGTAAAAATCGAAAATAAACTACGGAAGAAGCTGTACA
TATTTGGTAGTGTAACTAACCAGCATTTCTTGACGGATGCAATGGGTGTA
CTATTTTACGGAGGCACACTATAATCAAGTAATCAGGACAAAATCTCATG
GCCATGACTATACTGTAGTAGCAAATATTCCGACCACGCATACCCTAACA
TCAATAAAAGGGTATCTCGTGAAGAAAACCAACACGAGATAGATATTGTC
ATAGTCTACAACAACATCGACCATGAAATCTCCGTAATTCCAGCCTGTTT
TTGTTTTTCTAGGTTGAGATTAGTGGCAAAATTTGGACCTGTTAACTCTG
GCCCTCCGAAATGTTAATGGCGACGCTTTCGGGTCTGACTGTGATTACGT
ATTTTTGCCAAAATCGTCCCTTTCACAATGCGCACCCTCCCCCCGCCTCT
CGCTCTCTGTTCCGCCTCCTGTCCGCAGGTGGCTTTGTCGGGCGCAGTGG
AAGGCACAGCAATCTGGCCGTCTGAGTACAAGCCCATCGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9482:5749..7739+

>mRNA_S-dermatodea_contig9482.17515.1 ID=mRNA_S-dermatodea_contig9482.17515.1|Name=mRNA_S-dermatodea_contig9482.17515.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig9482:5749..7739+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGTTTCCAGTTCCTCCACGCGTTTCGGGCAAATGAAGGGCTCGTA
CGGCGATTACCAGCTAAGCGGCGACCCCTTGCTCTCCATTGCCGCCACCA
ACGGTGGTATCAACGTTCGGTTTGCGAACCTGGAGTCGGACTGGGTAACG
GGCCTGGATCAGTTCCTCACGTGGGAGGAGGCTACCGGGGAATGGGTCAA
CGTGCGGATCGAAACTACGTTCGGGAAGTCCATGACGATGAGAGTTTCCA
GTTCCTCCACGCGTTTCGGGCAAATGAAGGGCTCGTACGGCGATTACCAG
CTAAGCGGCGACCCCTTGCTCTCCATTGCCGCCACCAACGGTGGTATCAA
CGTTCGGTTTGCGAACCTGGAGTCGGACTGGGTAACGGGCCTGGATCAGT
TCCTCACGTGGGAGGAGGCTACCGGGGAATGGGTCAACGTGCGGATCGAA
ACTACGTTCGGGAAGTCCATGACGGTGGCTTTGTCGGGCGCAGTGGAAGG
CACAGCAATCTGGCCGTCTGAGTACAAGCCCATCGCTGTGGCTTTGTCGG
GCGCAGTGGAAGGCACAGCAATCTGGCCGTCTGAGTACAAGCCCATCGCT
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