mRNA_S-dermatodea_contig948.17513.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig948.17513.1
Unique NamemRNA_S-dermatodea_contig948.17513.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig948.17513.1 vs. uniprot
Match: D7FP75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP75_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 6.670e-58
Identity = 202/625 (32.32%), Postives = 281/625 (44.96%), Query Frame = 3
Query:  210 MKTPEETKRRQVLRGHEAYAKAERDLQKIRAS---RKYTTPTGGSSVAANGVQGGAARAAPMDDRGLRAARLTSVRSKRREQDKSREEADRVAQAMKDAPIKRKLERARRAAEELEAKERLALENTREMVRSSWQQREVPDVNPPDLTAGRVTEVDSN--EQDLESQQIEEAIMNSITDMEDGKGSTPSA-------VSSGGIVLDRPEKTTV--------------YWDPVLDGPIEDEKATESASRFSARGGEXXXXXXXXXXXAAPLAAENVEQGSADDSALRGYGGSSGSGRGGGRGQDWNTAMADALSVVEWDVTHEISSGSERESLRRTLLTLVKNALGGDDRRRRVRDNNAFFWENVGRWACGRCLMRLAGFVMERAPHGTATHSFAALADEDGGDDGGG----RADYVWVANAPNSIGQINMLQCLVATLEAHTTPGTTSSGDRDRRSPTSREPQLVVSIVPVYWV-------PGWKAQLEVDMAELVRGATDALAAGARVSPAGE-EHEFTRLRNQQDMEFQEALRQD------------------TAIVGKAAPVTTDSENPEDDIDGSQSVGGVKDEGEAGAA--------VPAPETTQERREKISASYARLGL 1892
            MK P + KR+QV+RG  A  + ER+ ++ R +   R YTTP  G +V  NG +   A AAP+ +  LR AR+   R+ + E+  +REEA+R A                                 ++ VRSSWQQR + + N   L        + +  + D ES+Q E A+  S+ D+E+G+G  P A        +    +   P   T+              YWDPVLDGPI     T++A                    AA   AEN E                           W+  +A+ALSVVE+DV+ EI +G+ RE  RRTL+ L++N L G++RRRRVR++N  F EN+GRWACGR LMR+AGF MER           + + +DGGD   G    R  YVWVA    S G++ M+Q LV  LE     GTT++ D                              PG         A    G+  AL    R+SPA E + +F+R+R +QD  F+EALR+D                  T  VG+      +S+ P  + +G + VGG +  G  G           PA ETT++RR KI+ SYARLGL
Sbjct:    1 MKAPTQKKRQQVVRGLHAAERVEREREQERRAHRGRTYTTPRQGQAVVTNGARSAVA-AAPLTEDELRGARIRRDRTDKYERKLAREEAERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLKQTVRSSWQQRSLDNNNDKPLGGTDTDNANGDVADSDFESRQFEAAVRKSLADLENGEGGAPPAPPAALPRATPAYAIQTPPHVETLHGTPRAFGNREIAEYWDPVLDGPIP-AGLTDNAG------------------VAADAGAENRE---------------------------WDAVLAEALSVVEFDVSDEIPAGANREEFRRTLIVLLRNILAGNERRRRVRNDNVVFQENIGRWACGRQLMRMAGFTMERE----------SSSRDDGGDADWGVNEQRGSYVWVARERRSRGRLAMVQGLVEALEGQ---GTTATEDXXXXXXXXXXXXXXXXXXXXXXXXXSARQDPGEPLARTGWYAFAATGSRAALPPPLRLSPAVEADDDFSRVRREQDEAFEEALRRDREAPASRKTKAPAFGDDDTQHVGENDNRQEESQGPPPEAEGDEDVGGGRSLGGIGVGHGDGSTDPPPAEETTEQRRAKIALSYARLGL 565          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig948.17513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP75_ECTSI6.670e-5832.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig948contigS-dermatodea_contig948:16104..23142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000570.1
Exons9
Model size2785
Cds size1686
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.2236378-UTR-S-dermatodea_contig948:16103..169931622925411.2236378-UTR-S-dermatodea_contig948:16103..16993Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 16104..16993 -
1694079915.456103-UTR-S-dermatodea_contig948:16103..169931694079915.456103-UTR-S-dermatodea_contig948:16103..16993Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 16104..16993 -
1622925411.3551552-UTR-S-dermatodea_contig948:22933..231421622925411.3551552-UTR-S-dermatodea_contig948:22933..23142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 22934..23142 -
1694079915.5742698-UTR-S-dermatodea_contig948:22933..231421694079915.5742698-UTR-S-dermatodea_contig948:22933..23142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig948 22934..23142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.2337227-CDS-S-dermatodea_contig948:16993..172151622925411.2337227-CDS-S-dermatodea_contig948:16993..17215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 16994..17215 -
1694079915.466771-CDS-S-dermatodea_contig948:16993..172151694079915.466771-CDS-S-dermatodea_contig948:16993..17215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 16994..17215 -
1622925411.2475677-CDS-S-dermatodea_contig948:17677..178731622925411.2475677-CDS-S-dermatodea_contig948:17677..17873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 17678..17873 -
1694079915.4779744-CDS-S-dermatodea_contig948:17677..178731694079915.4779744-CDS-S-dermatodea_contig948:17677..17873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 17678..17873 -
1622925411.2636564-CDS-S-dermatodea_contig948:18109..183581622925411.2636564-CDS-S-dermatodea_contig948:18109..18358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 18110..18358 -
1694079915.4886756-CDS-S-dermatodea_contig948:18109..183581694079915.4886756-CDS-S-dermatodea_contig948:18109..18358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 18110..18358 -
1622925411.2771983-CDS-S-dermatodea_contig948:18668..193121622925411.2771983-CDS-S-dermatodea_contig948:18668..19312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 18669..19312 -
1694079915.4989161-CDS-S-dermatodea_contig948:18668..193121694079915.4989161-CDS-S-dermatodea_contig948:18668..19312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 18669..19312 -
1622925411.2870507-CDS-S-dermatodea_contig948:19550..196051622925411.2870507-CDS-S-dermatodea_contig948:19550..19605Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 19551..19605 -
1694079915.5093307-CDS-S-dermatodea_contig948:19550..196051694079915.5093307-CDS-S-dermatodea_contig948:19550..19605Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 19551..19605 -
1622925411.298528-CDS-S-dermatodea_contig948:20183..202551622925411.298528-CDS-S-dermatodea_contig948:20183..20255Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 20184..20255 -
1694079915.5198767-CDS-S-dermatodea_contig948:20183..202551694079915.5198767-CDS-S-dermatodea_contig948:20183..20255Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 20184..20255 -
1622925411.3128524-CDS-S-dermatodea_contig948:20745..208951622925411.3128524-CDS-S-dermatodea_contig948:20745..20895Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 20746..20895 -
1694079915.5304081-CDS-S-dermatodea_contig948:20745..208951694079915.5304081-CDS-S-dermatodea_contig948:20745..20895Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 20746..20895 -
1622925411.3262315-CDS-S-dermatodea_contig948:21971..220361622925411.3262315-CDS-S-dermatodea_contig948:21971..22036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 21972..22036 -
1694079915.5409365-CDS-S-dermatodea_contig948:21971..220361694079915.5409365-CDS-S-dermatodea_contig948:21971..22036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 21972..22036 -
1622925411.3369963-CDS-S-dermatodea_contig948:22900..229331622925411.3369963-CDS-S-dermatodea_contig948:22900..22933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 22901..22933 -
1694079915.553223-CDS-S-dermatodea_contig948:22900..229331694079915.553223-CDS-S-dermatodea_contig948:22900..22933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig948 22901..22933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig948.17513.1prot_S-dermatodea_contig948.17513.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig948 16994..22933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig948.17513.1

>prot_S-dermatodea_contig948.17513.1 ID=prot_S-dermatodea_contig948.17513.1|Name=mRNA_S-dermatodea_contig948.17513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=562bp
MKTPEETKRRQVLRGHEAYAKAERDLQKIRASRKYTTPTGGSSVAANGVQ
GGAARAAPMDDRGLRAARLTSVRSKRREQDKSREEADRVAQAMKDAPIKR
KLERARRAAEELEAKERLALENTREMVRSSWQQREVPDVNPPDLTAGRVT
EVDSNEQDLESQQIEEAIMNSITDMEDGKGSTPSAVSSGGIVLDRPEKTT
VYWDPVLDGPIEDEKATESASRFSARGGETAGFWDPDLDGAAPLAAENVE
QGSADDSALRGYGGSSGSGRGGGRGQDWNTAMADALSVVEWDVTHEISSG
SERESLRRTLLTLVKNALGGDDRRRRVRDNNAFFWENVGRWACGRCLMRL
AGFVMERAPHGTATHSFAALADEDGGDDGGGRADYVWVANAPNSIGQINM
LQCLVATLEAHTTPGTTSSGDRDRRSPTSREPQLVVSIVPVYWVPGWKAQ
LEVDMAELVRGATDALAAGARVSPAGEEHEFTRLRNQQDMEFQEALRQDT
AIVGKAAPVTTDSENPEDDIDGSQSVGGVKDEGEAGAAVPAPETTQERRE
KISASYARLGL*
back to top

mRNA from alignment at S-dermatodea_contig948:16104..23142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig948.17513.1 ID=mRNA_S-dermatodea_contig948.17513.1|Name=mRNA_S-dermatodea_contig948.17513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7039bp|location=Sequence derived from alignment at S-dermatodea_contig948:16104..23142- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCACAGCCTACGTCAACCGCTATCCGGACGGGCAGCACCACGCGTCT GATCAGTACGACGCTCGGGGTCACAGTCCTGTGCATGAACCCGGAGCTGG TGGCAGCAGCGGTGATGATCAACTCGGCAACAACAACAACAACAACAACA GCAATACTCCGCAAGCAGCGCATGGCGGGGGCGAATGGGTTGAAGGTCCC TGCTGGCGCATGAAGACGCCAGAAGAAACCAAGAGGCGACAGGTGTGTAT GTGTGTGTGTGATGGGGTAGAGTGCCATATCTAATTGAGCTTGCGTTGCC TTCGTTGCATCAAGCAAGCGCAGCTCGACGAGCCTTGACCTTTGGGCCCA CGGCGGTAAGCACAGGCACTCGGATCCCTCGGATCTGTCTGGCAGTAAAC ACGTGAATTAATTGCCGCAAAAAACTTTTACAGAGACTTTTTTTGTTCCT GTACATACTGCTTTTGTTGTTGTCTGTATGATATTATACTTAAAAAACTA CCATCACCCCCGTCTGTGGGGGCTATATTGTTATTGGGACATACATTCTA TACGATATACAGTACTTGCTTTGCCGAGGTCCGTCTGTGGTCACAAGGGA TCGTCCCATTTCTCCCCAGTTCTCACCATTGATTTTTGTGGCGCATTGGG TTCGGCACTCCCACAGCTCGCCGATTTCTCATTTTTTTTTCTTGTACGCT CTCGCGCTTTCCGCGGCGGAGGAAGAGAAAATAAATAAATATCGACTCTG CAGGGATTTGAACCCGGGTCCTCCGCCGACTGGCCTGTTGGTCAACCAAT TCAACCACGGGGCGCACACTACTGCTGCTGTGCATACAAATAAAACTTAC GACGTGCAATCGTACTCCTTGGACTTGCCAAAATATTAGGTCTGTGCAAA ATATGTATGTATTTTTACACTATGTGGAAATTATGTATGTGAACTACTGT TGTCGCAGTTGTACAGAGTATGCATATCAAAGAAGTATGTGACATCGAGC TATTATACGCACGATTTGCAATATATCGCTGACACTATACAGTTGTGCGA ACCCCATCAGAATTAACTGTATGTGTCCCTCTCGGCACTTGCCCCTGTCG ATGCAGGTTCTGCGTGGACACGAAGCGTACGCCAAGGCGGAGCGTGACCT TCAGAAAATCAGGGCAAGCCGGTAAGCGCCGTGTGGTAATAGTGCCTCAA AATCACAGCCTGCGCGTTGTGCCACGGATTGCCTGGTGGCGAGCTAGAGC TACTGGTACTATTGTAGTAATGAATCTAAATAGGCTAATAATATGCACAC GTATTCAAAGTGTTTTTGATTTGATTTGATTTGATTTGATTTGCACACGT ATACAGTAACCGATCGGCTTAATCCGACCCGACTTGTGGTCAGACACGCA AAGAGTCAAGGAGAAAAAAAAAAAACTAATCAGAACTCTACTTCTACTAC ACACCGTGCCGTCCCTGGTACTTACTATGGTACAAGAAATTTGACAGGCG CGCTTTAAACGAGTACTACCCGCGACCGTATGGCCTCGTCACGAGGCAAG TGTTTGTACGTTGTCCGCGGCAAAAATTTCTTCACACGGAGGCTGCATAG TTGTTGTTGTTGTTGTTGGTGTTGTTGGCACACATACGATAGACTTGCTT TTCCGAAGTCCGTCTGTGGTCACAAGGGATCATCATTCTCTCCCCGGTTC TCACTTTTGATTTTTATCGCGCAGTGGGTTCTGCACTCCTACAGCTCGCC GATTTCTCGGATTTCTAGTCTGGCAGGAAAATCAGATACACCACAGACAG CAGCATGATGTACATCTGAGATGGATGGAGAGTATTAGGCGAGGGGTTGG TACGTCGCCAAAGAAGTAAACAACCACATCATGGGCGAGGGGGTTTGTTC CAATCTGAAAGCTTACCTGAGGCTCAGAGCCCGTTTTAGAAGGAAGGACG GGTGTGGCGTATGGGACGCTTCATTAATCTTACTGACTTACTTTTGTTTT CATGTGAAAACGCCTAAAGAGGCACTGGAACCCAAAATCCTTGTGTTTTC GTGAGGCGAAAGCATATCATTACACAATACGTGGACGAGAGGGCAATAAC CTACAATCATAGTCTTGACGGCGAATGTGAAACGGGGTTTAGACGGAACC CCGAGGACGGTTGATAGTTTCGTTAGGTTTGAAGAGGCGCCTGGAGCAAG CCACCAAGCATTCGAAAGAGTCACGCTTGCTCTCTGTTACGTCGCAGAAA GTACACCACTCCGACCGGAGGATCGTCGGTCGCAGCTAATGGCGTGCAAG GAGGGGCCGCTCGGGCTGCGCCGATGGATGACCGCGGACTACGTGCAGCC CGCTTGACGAGTGTTCGGTCAAAGAGGAGGGAGCAAGATAAATCAAGGCG CGTATCTGTACCATATAGTATACCAGTATACTGTACCATGTACCATACCA GCACTTTATATATATGACATACTGTACTGTAGGGATCCGGATGTTTTTGG TGAGATGATATTCGGGCGACGATCGGAGCGATGACCCGTCGGATTCGATC AGGATCGCGTCTTCATGCACGCTTCTTACATGGCCGCCAATGTGATATAA CAGTGGGTCTGTCTGGCTTGTGTTTTGATCTGTGAATAGTGGTGCGCAGT ATGCTGTTCGTGTTCTATACGGCACGCGCCGCGCAAGCTGAGGGGTATTA TACTGCGGCGACCCTGAACTCACGGGGTACGGTGGACTGCTTCCAGAAAA GCGACGCGCGTGGTCGCAACATATCATTGAGCAAACATACATACCAGGTA GTTTATTGGTGGTGTTAGATGACGTACACGCGTTGCGCGTATCTGTTGTC GTTGTGGCCGGCTATTCGCGTCCTCTGGGAAGGGCAGGGAGGAGGCCGAT CGTGTGGCACAAGCGATGAAGGACGCTCCCATCAAGCGGAAGCTGGAAAG GGCTCGTCGGTGAGTGGACGCGAGTGTTCAATATCCCCCCTAGCATGCTA CCGCTTAGGCGAATGGTGTAGTGACGGGGCTCCTCCTTGTGCATCTCGAC CTCTGCGGATGCCCACGTGAGCGCAGGAGGTCAACCCATGACAAGGAGAT CCACCTAATTCCGGTACACAAACGTTTAGCACAAAACTGTCCGTTGGTAG AGGGAAGCCGGTTTCTGTGTGAGGCAGACGACACGAGCCAGGCCATACAT TTCCGGATGCTTCAGCCGATCAGTCCCGCGGAATCCGAGGAGCGGGAGCA ACAGCAAGACAGACTGTGCAGAGGTGCTGGGCTCGTGCTCGTGTACACTT GAGAAGGAACATTGACATGAAACATTATCGATTCGCGCATTATCAGCAGC ACTTGCTGAGGGGATATCGAATCGACGATGAAGCGAATATAGGGGCTGAA TCAACAAGTTGCAATGTCCCTTCCCGAATAAGCGCTCAGCGCCACCGTTC GTTCGCTGGTCCCCCCTGTCGTAATATCGCGGCTTTCGCTTGGGCAAAAA CATGTCTTGCGAAAACGGCCATGACCCATGCCGCCAGGGCCGCGGAGGAG CTCGAGGCCAAGGAAAGGTTGGCGTTAGAAAATACGAGGGAGGTGAGCAG AGGAAACTCGGTGGGGGGGGGTATCAAAAGGACGTAAGCACGGGTGGCGG GTTGGATAGTCGACTGGATAGGAACTGCATCGATTAGGACCGTTCGGTAC GGTAACCTGCCCGGAGCATTTAGAGCTGCTAGTAATTTAATACTTGTGGC AGTTGTTTTGATGCCTAGGCTGAAAATCCATTATTAATAGCCATTATGTT CAATCCACCGACGATGTCTCTATCGTACAGATGGTGCGCTCCTCGTGGCA ACAGCGTGAGGTCCCCGATGTCAACCCTCCCGACCTCACCGCTGGCCGCG TCACCGAGGTCGACAGCAACGAACAAGACCTCGAATCGCAGCAGATCGAG GAAGCAATCATGAACAGCATCACCGATATGGAAGATGGGAAAGGCTCCAC CCCTTCTGCCGTCTCTTCGGGAGGAATCGTCCTCGATCGCCCAGAAAAAA CGACAGTATACTGGGATCCCGTCCTAGACGGACCCATTGAGGACGAAAAA GCTACCGAATCTGCGAGCAGGTTCTCTGCTCGTGGTGGAGAAACGGCGGG GTTTTGGGACCCTGACCTCGACGGTGCCGCTCCCTTGGCCGCCGAAAATG TCGAGCAAGGTTCCGCGGATGATTCAGCTCTCCGCGGCTACGGTGGATCA AGCGGCAGCGGGAGGGGAGGGGGAAGGGGACAGGATTGGAACACCGCCAT GGCGGATGCGTTATCCGTCGTGGAATGGGACGTAACGCACGAAATTTCGT CCGGGTCGGAACGCGAGAGCTTGCGCCGAACCCTCCTCACCCTTGTCAAG AACGCGCTCGGGGGAGACGACCGGCGTAGGAGGGTGCGCGACAATAACGC GTTTTTTTGGGAAAACGTCGGCAGGTTAGATCTTTGCAGCGAGCGGGCGG AGTCCGGGCCTTGGAGGTCGTTCTTAGCGACGTGCTGCATTCGTTTGAGG ACAACCTCTGGCGCATCAATGTCATCGAGTTTTGCTGTTTTCGTTTCGAT ATGTTTTTGTATATTGAACCCTTGGGCATGGCATGACCTTTGAACGCATG GGACCTCCCCCCCCCCCTCATGGTTCCGAATTCTTCGTGCACTTTGACAT TTTCTGACTCCAACCACGATTACCCACCCTGACGAAGCCCACCCTCCTAC TTTTTCTGCCGTATAACGACCATCGACGCATCAGGTGGGCATGCGGCAGG TGCCTGATGCGCCTAGCGGGATTTGTCATGGAGAGGGCGCCGCATGGGAC GGCAACCCACTCCTTCGCCGCCCTCGCTGACGAGGATGGGGGTGATGATG GAGGTGGACGGGCGGATTACGTGTGGGTGGCGAACGCTCCAAACTCCATC GGTCAAATCAATATGCTCCAGTGTCTGGTGGCGACTTTGGAGGCACACAC GACGCCCGGGACGACATCCTCAGGTGATCGAGAGTAGCAATGAGGGGACG ACTCGGCGAGGAGACAGTTTCACCGGGTTGGTTGCTGAGTGTCATGTTCA GAAAAACAAAATGTAGCTGAATATTCGGCACCCCCGCCACACCAACACGC TCACATGAAGCTAGCCGCGTCGAACGCACAGCACCGAACAAACACGTCGT GCAAGAAACGTTTTTCCATCGGCCACGGGCCGTGGAGCGATTCCCTCACT GAAAATACGGCTGGCACAGCCGGCGTTCGCCAACTTCCCGTGAGCCACAG TTAGTTGTCTCAATAGTCCCCGTTTATTGGGTTCCAGGCTGGAAAGCGCA GCTCGAGGTGGATATGGCTGAGCTTGTGAGGGGCGCGACGGACGCTCTAG CGGCAGGAGCCCGTGTAAGTCCCGCGGGGGAAGAACACGAGTTTACTCGC CTCCGCAACCAACAGGTGCGTCAGGAATTACACGGATTTCGCGGGAGGTT GGGTGGGTCAGAGTGTGGATGTTCTCCCAGAGGGCGCACCGTAACGTATT GCACGTCTTGGGCTACGCCACGATCTTAACACGATGATGTACCTCATTGC ATAATCTGGCGAGGCGCGTGTGCCCGACGGTGTGGCGGTGTCACCGTTGA ATGTAGCCGCCTCAACAGAACCATAGTTAGCACCCGTTATTTATCATTAT TCCATTCATAGTAATCTATTCCACGGCGTTCGACCCACAATTTTATGTAT GATCGCGTCCTGCTACACCTCATCGTCATGCTTCCAACCATGTGAAACGT TCACACAAGAAATACTAAAAGCATGAAACCTTACCCTTCCCAGAAGGAAT GTGATGTGTAGATCCACCCTTCAGCACAGGGTACCTTATGAAGCCCACCC ACCGACCGTCTCTCTCGATTTGTGTAGGACATGGAATTCCAGGAGGCGCT CCGCCAAGACACGGCCATCGTAGGTAAGGCCGCGCCCGTGACAACTGACA GCGAAAATCCGGAGGACGACATCGACGGTTCCCAGAGTGTTGGAGGCGTC AAGGATGAAGGGGAGGCTGGGGCTGCTGTCCCCGCCCCCGAGACCACACA GGAGAGGCGCGAGAAGATTTCCGCGAGCTACGCCCGCCTTGGACTGTGAT CTGATTTATGCTGGTTGCGCTTGTTTTATATTAGCTGCTTTGCAGACGGA AACGCGGGCGGGCGGGCGCACTTTTTGGCGTTTGTGTGGAAGAGCCAGAT CAGTTTGGTCAGGCTGGCGGCTACGTTAGATCGGAGATACGAGGGAAATT CCGACATCTCCGCGATATCTTGCGAAAATGGGGTTAGTACGGCTCCCTCT TCCACTTACTTACGTAATACTTTGTTGTGGTTCTCGCAACTGCTGCACAC CCCCTTGCCACGAAGTGGAACACAAATTGGAATGAGGGTGAAGAGGTGGA TCGCCGCGCGGATCCATTGACCCATGACGTCAGCAGATCGGAACATGATA TTCCAATCTACCCGTCATCGCTCGGCGATCCCGCTACGATTCCCCATGTC ATAGGCGATATTTATTTTTAGGTCCATATCGCTGTTGAACCCAACAGAGT TGACACGGCGAATAGCTATTCAGTCCGTCATGCACTAGGCTGTACGCGCG ATGAAAAGGTGCGAAAACTATGCCATTTTATTTCCGCCCTCCTTGCACAT ATACCATACTGAGATAGAAGAGGACGTACTGTACCTACTTTTCTCTCCCC TGGAACTATTCATACTTTGCCTGTGAGTTTATTGTTTTTTTATAAAAAAC ATTTTTTTATATCCTCCGGTGGCGCGCTGGAAGAGTCGTAGAATGCAGCA CTTTTTGACGGCTGTTCGAGGCACTTGTGTAAGGATGACAAGTCCGCGCT GAAGAAGCACTTTCGGTCCAGTTGAAATAGCTGCACGCGTAGGGGCGGGC CCCTAAGTAGCCAGGGGTTGTCCGCCAATCCAGCCGAGAGAAGCACACGC TCGACGGCATGAACGGGCTTTGATAATGGCGCGCGCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig948:16104..23142-

>mRNA_S-dermatodea_contig948.17513.1 ID=mRNA_S-dermatodea_contig948.17513.1|Name=mRNA_S-dermatodea_contig948.17513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3372bp|location=Sequence derived from alignment at S-dermatodea_contig948:16104..23142- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGACGCCAGAAGAAACCAAGAGGCGACAGATGAAGACGCCAGAAGA
AACCAAGAGGCGACAGGTTCTGCGTGGACACGAAGCGTACGCCAAGGCGG
AGCGTGACCTTCAGAAAATCAGGGCAAGCCGGTTCTGCGTGGACACGAAG
CGTACGCCAAGGCGGAGCGTGACCTTCAGAAAATCAGGGCAAGCCGAAAG
TACACCACTCCGACCGGAGGATCGTCGGTCGCAGCTAATGGCGTGCAAGG
AGGGGCCGCTCGGGCTGCGCCGATGGATGACCGCGGACTACGTGCAGCCC
GCTTGACGAGTGTTCGGTCAAAGAGGAGGGAGCAAGATAAATCAAGAAAG
TACACCACTCCGACCGGAGGATCGTCGGTCGCAGCTAATGGCGTGCAAGG
AGGGGCCGCTCGGGCTGCGCCGATGGATGACCGCGGACTACGTGCAGCCC
GCTTGACGAGTGTTCGGTCAAAGAGGAGGGAGCAAGATAAATCAAGGGAG
GAGGCCGATCGTGTGGCACAAGCGATGAAGGACGCTCCCATCAAGCGGAA
GCTGGAAAGGGCTCGTCGGGAGGAGGCCGATCGTGTGGCACAAGCGATGA
AGGACGCTCCCATCAAGCGGAAGCTGGAAAGGGCTCGTCGGGCCGCGGAG
GAGCTCGAGGCCAAGGAAAGGTTGGCGTTAGAAAATACGAGGGAGGGCCG
CGGAGGAGCTCGAGGCCAAGGAAAGGTTGGCGTTAGAAAATACGAGGGAG
ATGGTGCGCTCCTCGTGGCAACAGCGTGAGGTCCCCGATGTCAACCCTCC
CGACCTCACCGCTGGCCGCGTCACCGAGGTCGACAGCAACGAACAAGACC
TCGAATCGCAGCAGATCGAGGAAGCAATCATGAACAGCATCACCGATATG
GAAGATGGGAAAGGCTCCACCCCTTCTGCCGTCTCTTCGGGAGGAATCGT
CCTCGATCGCCCAGAAAAAACGACAGTATACTGGGATCCCGTCCTAGACG
GACCCATTGAGGACGAAAAAGCTACCGAATCTGCGAGCAGGTTCTCTGCT
CGTGGTGGAGAAACGGCGGGGTTTTGGGACCCTGACCTCGACGGTGCCGC
TCCCTTGGCCGCCGAAAATGTCGAGCAAGGTTCCGCGGATGATTCAGCTC
TCCGCGGCTACGGTGGATCAAGCGGCAGCGGGAGGGGAGGGGGAAGGGGA
CAGGATTGGAACACCGCCATGGCGGATGCGTTATCCGTCGTGGAATGGGA
CGTAACGCACGAAATTTCGTCCGGGTCGGAACGCGAGAGCTTGCGCCGAA
CCCTCCTCACCCTTGTCAAGAACGCGCTCGGGGGAGACGACCGGCGTAGG
AGGGTGCGCGACAATAACGCGTTTTTTTGGGAAAACGTCGGCAGATGGTG
CGCTCCTCGTGGCAACAGCGTGAGGTCCCCGATGTCAACCCTCCCGACCT
CACCGCTGGCCGCGTCACCGAGGTCGACAGCAACGAACAAGACCTCGAAT
CGCAGCAGATCGAGGAAGCAATCATGAACAGCATCACCGATATGGAAGAT
GGGAAAGGCTCCACCCCTTCTGCCGTCTCTTCGGGAGGAATCGTCCTCGA
TCGCCCAGAAAAAACGACAGTATACTGGGATCCCGTCCTAGACGGACCCA
TTGAGGACGAAAAAGCTACCGAATCTGCGAGCAGGTTCTCTGCTCGTGGT
GGAGAAACGGCGGGGTTTTGGGACCCTGACCTCGACGGTGCCGCTCCCTT
GGCCGCCGAAAATGTCGAGCAAGGTTCCGCGGATGATTCAGCTCTCCGCG
GCTACGGTGGATCAAGCGGCAGCGGGAGGGGAGGGGGAAGGGGACAGGAT
TGGAACACCGCCATGGCGGATGCGTTATCCGTCGTGGAATGGGACGTAAC
GCACGAAATTTCGTCCGGGTCGGAACGCGAGAGCTTGCGCCGAACCCTCC
TCACCCTTGTCAAGAACGCGCTCGGGGGAGACGACCGGCGTAGGAGGGTG
CGCGACAATAACGCGTTTTTTTGGGAAAACGTCGGCAGGTGGGCATGCGG
CAGGTGCCTGATGCGCCTAGCGGGATTTGTCATGGAGAGGGCGCCGCATG
GGACGGCAACCCACTCCTTCGCCGCCCTCGCTGACGAGGATGGGGGTGAT
GATGGAGGTGGACGGGCGGATTACGTGTGGGTGGCGAACGCTCCAAACTC
CATCGGTCAAATCAATATGCTCCAGTGTCTGGTGGCGACTTTGGAGGCAC
ACACGACGCCCGGGACGACATCCTCAGGTGATCGAGAGTGGGCATGCGGC
AGGTGCCTGATGCGCCTAGCGGGATTTGTCATGGAGAGGGCGCCGCATGG
GACGGCAACCCACTCCTTCGCCGCCCTCGCTGACGAGGATGGGGGTGATG
ATGGAGGTGGACGGGCGGATTACGTGTGGGTGGCGAACGCTCCAAACTCC
ATCGGTCAAATCAATATGCTCCAGTGTCTGGTGGCGACTTTGGAGGCACA
CACGACGCCCGGGACGACATCCTCAGGTGATCGAGACCGGCGTTCGCCAA
CTTCCCGTGAGCCACAGTTAGTTGTCTCAATAGTCCCCGTTTATTGGGTT
CCAGGCTGGAAAGCGCAGCTCGAGGTGGATATGGCTGAGCTTGTGAGGGG
CGCGACGGACGCTCTAGCGGCAGGAGCCCGTGTAAGTCCCGCGGGGGAAG
AACACGAGTTTACTCGCCTCCGCAACCAACAGCCGGCGTTCGCCAACTTC
CCGTGAGCCACAGTTAGTTGTCTCAATAGTCCCCGTTTATTGGGTTCCAG
GCTGGAAAGCGCAGCTCGAGGTGGATATGGCTGAGCTTGTGAGGGGCGCG
ACGGACGCTCTAGCGGCAGGAGCCCGTGTAAGTCCCGCGGGGGAAGAACA
CGAGTTTACTCGCCTCCGCAACCAACAGGACATGGAATTCCAGGAGGCGC
TCCGCCAAGACACGGCCATCGTAGGTAAGGCCGCGCCCGTGACAACTGAC
AGCGAAAATCCGGAGGACGACATCGACGGTTCCCAGAGTGTTGGAGGCGT
CAAGGATGAAGGGGAGGCTGGGGCTGCTGTCCCCGCCCCCGAGACCACAC
AGGAGAGGCGCGAGAAGATTTCCGCGAGCTACGCCCGCCTTGGACTGTGA
GACATGGAATTCCAGGAGGCGCTCCGCCAAGACACGGCCATCGTAGGTAA
GGCCGCGCCCGTGACAACTGACAGCGAAAATCCGGAGGACGACATCGACG
GTTCCCAGAGTGTTGGAGGCGTCAAGGATGAAGGGGAGGCTGGGGCTGCT
GTCCCCGCCCCCGAGACCACACAGGAGAGGCGCGAGAAGATTTCCGCGAG
CTACGCCCGCCTTGGACTGTGA
back to top