mRNA_S-dermatodea_contig94744.17508.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94744.17508.1
Unique NamemRNA_S-dermatodea_contig94744.17508.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.360e-26
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYDGESLPLDAAAENGHLEVVRELVQR 165
            TPLYISARQGRLEDVRILVGAK NPLLPAYDGESLPLDAAAENGHLEVVRELVQR
Sbjct:  139 TPLYISARQGRLEDVRILVGAKVNPLLPAYDGESLPLDAAAENGHLEVVRELVQR 193          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.650e-23
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYDGESLPLDAAAENGHLEVVRELVQR 165
            TPLY SARQGRLEDV++LVG KANPL+PAYDGESLPLDAAAENG+L VVRELVQR
Sbjct:  117 TPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESLPLDAAAENGYLGVVRELVQR 171          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.280e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRIL--------VGAKANPLLPAYDGESLPLDAAAENGHLEVVRELVQR 165
            TPL+++A +G  + + +L        VGAKANP+L AYDGESLPLD AAENG L VVREL QR
Sbjct:  105 TPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQR 167          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.500e-8
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYDGES----LPLDAAAENGHLEVVRELVQR 165
            TPLY +A +G ++  R+L+ AKA+PLL      S    LPLDAAAENGH EVV EL+++
Sbjct:  150 TPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQ 208          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: D7FWJ9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.250e-6
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 YISARQGRLEDVRILVGAKANPLL-----PAYDG-ESLPLDAAAENGHLEVVRELVQR 165
            YI+AR G L+ +R L+  KANPLL     P+  G  S PLD AA+NGH ++VRELV++
Sbjct:   79 YIAARSGPLDTLRELLRLKANPLLEFEPPPSSVGCGSAPLDIAAQNGHSDIVRELVEQ 136          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5KEI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI1_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.660e-6
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYD---GES-LPLDAAAENGHLEVVRELVQ 162
            TPLYI+A QG L  V++L+ AKANPLL       G S +PL+ AA+ G   VVREL++
Sbjct:   14 TPLYIAAMQGHLGAVKVLLHAKANPLLTRSSECSGRSFVPLEVAAQTGRSAVVRELLR 71          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.230e-6
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYDGESL-PLDAAAENGHLEVVRELVQR 165
            TPL+ +  +G+LE  R L+ A ANPL+      +L PLD+AA NG+L V+REL+QR
Sbjct:  136 TPLFRAMTEGQLEATRELLRANANPLITRAPLPTLLPLDSAARNGNLLVMRELIQR 191          
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 TPLYISARQGRLEDVRILVGAKANPLLPAYDGES----LPLDAAAENGHLEVVRELVQR 165
            TPLY +A  G +  V +L+ AKA+PLL           LPLD AA+NGH EVV EL+++
Sbjct:  150 TPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQ 208          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94744.17508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE2.360e-2698.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE5.650e-2387.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.280e-1158.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE4.500e-852.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWJ9_ECTSI2.250e-651.72EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KEI1_9PHAE6.660e-651.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI9.230e-650.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE1.270e-547.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94744contigS-dermatodea_contig94744:376..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.8630514-CDS-S-dermatodea_contig94744:375..5401622925410.8630514-CDS-S-dermatodea_contig94744:375..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94744 376..540 -
1694079915.2202182-CDS-S-dermatodea_contig94744:375..5401694079915.2202182-CDS-S-dermatodea_contig94744:375..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94744 376..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94744.17508.1prot_S-dermatodea_contig94744.17508.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94744 376..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94744.17508.1

>prot_S-dermatodea_contig94744.17508.1 ID=prot_S-dermatodea_contig94744.17508.1|Name=mRNA_S-dermatodea_contig94744.17508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
TPLYISARQGRLEDVRILVGAKANPLLPAYDGESLPLDAAAENGHLEVVR
ELVQR
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mRNA from alignment at S-dermatodea_contig94744:376..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94744.17508.1 ID=mRNA_S-dermatodea_contig94744.17508.1|Name=mRNA_S-dermatodea_contig94744.17508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig94744:376..540- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACCCCTGTACATTTCGGCACGACAAGGGAGACTTGAAGATGTCAGGAT TCTCGTTGGGGCGAAGGCGAATCCGCTCTTGCCTGCATACGACGGCGAAA GCCTCCCGCTCGACGCGGCTGCTGAAAACGGACACCTGGAAGTTGTCCGC GAACTAGTACAGCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig94744:376..540-

>mRNA_S-dermatodea_contig94744.17508.1 ID=mRNA_S-dermatodea_contig94744.17508.1|Name=mRNA_S-dermatodea_contig94744.17508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig94744:376..540- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACCCCTGTACATTTCGGCACGACAAGGGAGACTTGAAGATGTCAGGAT
TCTCGTTGGGGCGAAGGCGAATCCGCTCTTGCCTGCATACGACGGCGAAA
GCCTCCCGCTCGACGCGGCTGCTGAAAACGGACACCTGGAAGTTGTCCGC
GAACTAGTACAGCGAACACCCCTGTACATTTCGGCACGACAAGGGAGACT
TGAAGATGTCAGGATTCTCGTTGGGGCGAAGGCGAATCCGCTCTTGCCTG
CATACGACGGCGAAAGCCTCCCGCTCGACGCGGCTGCTGAAAACGGACAC
CTGGAAGTTGTCCGCGAACTAGTACAGCGA
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