mRNA_S-dermatodea_contig9450.17486.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9450.17486.1
Unique NamemRNA_S-dermatodea_contig9450.17486.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9450.17486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9450contigS-dermatodea_contig9450:5041..7301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1647
Cds size1377
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9450.17486.1prot_S-dermatodea_contig9450.17486.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9450 5825..7201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.113518-UTR-S-dermatodea_contig9450:5040..50871622925409.113518-UTR-S-dermatodea_contig9450:5040..5087Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 5041..5087 +
1694079914.041732-UTR-S-dermatodea_contig9450:5040..50871694079914.041732-UTR-S-dermatodea_contig9450:5040..5087Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 5041..5087 +
1622925409.1278555-UTR-S-dermatodea_contig9450:5701..58241622925409.1278555-UTR-S-dermatodea_contig9450:5701..5824Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 5702..5824 +
1694079914.0534992-UTR-S-dermatodea_contig9450:5701..58241694079914.0534992-UTR-S-dermatodea_contig9450:5701..5824Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 5702..5824 +
1622925409.1520486-UTR-S-dermatodea_contig9450:7201..73011622925409.1520486-UTR-S-dermatodea_contig9450:7201..7301Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 7202..7301 +
1694079914.0747275-UTR-S-dermatodea_contig9450:7201..73011694079914.0747275-UTR-S-dermatodea_contig9450:7201..7301Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9450 7202..7301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.1395931-CDS-S-dermatodea_contig9450:5824..72011622925409.1395931-CDS-S-dermatodea_contig9450:5824..7201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 5825..7201 +
1694079914.0649638-CDS-S-dermatodea_contig9450:5824..72011694079914.0649638-CDS-S-dermatodea_contig9450:5824..7201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 5825..7201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9450.17486.1

>prot_S-dermatodea_contig9450.17486.1 ID=prot_S-dermatodea_contig9450.17486.1|Name=mRNA_S-dermatodea_contig9450.17486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=459bp
MTSAPKATELQPFSLSKRRQPTQPQRDQIAASTALAEDASMPSVASGNSG
GVSGGGACAVGASSPSTVPADASAEQTMWVIDRGPARYSSQAELAVMAAV
ATSRRSDALQEKGSRRCSGADDRSDAGFNSGAEQSKSVGDGDLEASVDGV
DVKLSGRPANVSGVTAVADALERSERVGPTDGRPSPSVGEISRGTSGGIA
ADGGIPIRLGGLDSSSSITNIGNGDQLPRRKKNKRGRGGYGTNPGKEIYS
SPRPPPSILPANGGGGHGETADVCGNKEPTPGRSSDGANNDVLTKCARET
TAGVEPPIRVMDSRPAMSSRAVTSSTRSGFLPNANSHKATPVARVIEEAM
PRITVAPFQHKGGPKGAPKAEVPPPPSKSQSGGTSQGRLMARMERETPER
QIDSQNEGGAATKRSSNSEGQPSKKKKRIKGKKSAKIRSGGSGDGGADAI
DDIFGSLL*
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mRNA from alignment at S-dermatodea_contig9450:5041..7301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9450.17486.1 ID=mRNA_S-dermatodea_contig9450.17486.1|Name=mRNA_S-dermatodea_contig9450.17486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2261bp|location=Sequence derived from alignment at S-dermatodea_contig9450:5041..7301+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGATCTCAAAAGCAGGGGCAGCATTCCACCGGCCAAGAAAAGTAAGGTG
AGCCCTTACTATTGATGCGCTGGAGACCTAGGTCAAACCATATAGGCTGT
GCGGCATGAAAGGAGCTGCTGGGGCTGGATGGCCGGTAAGAGGGTGGCTG
GTTTCTGTGTTGTCGTGCTCCTGTCTGGGTTTTATTTGTCTCCTCTGGGA
ATTTTGTTTTTCTGGTCTCATTCGCGGCCAATTCACGAGTAGTAGGGTAC
GTGTGCTGGCCAATGCCGCAAGGTGAGACCAGTGCTTCGGTAAGTTTGCT
GTTAATCGCCCTCGCACCATCTATGCATAGAGCGGAGAACTTGTGTAAGG
TATGGTGCTAGTCACGGCGTGCTCGACCGGCTCTTGAGTCGCTTGATTCC
CCACGACGCGACTAATCGGCGAAGGCGACGGCCTGTGCTTTTTATATCTT
GCCGCCACTTCACTTGACCACGGTGTGTGCATATGGCGTCCGTACTTTCG
AGTCGACCCCGATGCTGCTGAAGTGAATGAAACCCGACCGCTGGCCATTC
CCATGCCCACATGGTTCCATCTTTATGAAAATTGCTGCTGTGTTTTTGTG
TCGCACATCATTCCCTGCCACCGCCACCGGCCGCTGTTCCCGTTGACCGT
TCTGACTCCAGATTATTTTGGCGTGTGAGTTCAGTGACAGCAGCTCTGAC
GACGACGGCGACGATCGCAATAGCCGAAATCCCGCGTCGAAAACGGCAGC
ACACTCGGAAGGGGCTGCGGCGGCAGCGTCTCGCATGACTTCGGCTCCGA
AGGCCACCGAGCTCCAACCGTTTTCCCTTTCGAAGCGCAGGCAGCCGACA
CAACCACAGCGTGATCAAATAGCCGCATCAACGGCGCTAGCCGAAGATGC
CTCGATGCCCTCGGTAGCCTCCGGCAACAGTGGTGGGGTATCGGGCGGGG
GCGCTTGTGCAGTTGGAGCAAGCTCGCCTTCGACAGTGCCGGCCGACGCA
TCAGCTGAGCAGACGATGTGGGTGATCGATCGGGGACCAGCCAGATATTC
TTCTCAGGCGGAGTTGGCGGTGATGGCGGCAGTGGCCACATCCCGCAGAA
GCGACGCCCTTCAAGAGAAGGGCAGTCGACGTTGCTCTGGAGCTGATGAT
AGGTCAGATGCAGGCTTCAATTCCGGTGCGGAACAAAGTAAGTCCGTCGG
TGACGGCGATCTCGAGGCGTCCGTGGACGGCGTCGACGTCAAGCTCAGCG
GTCGTCCTGCCAACGTGTCAGGCGTGACGGCCGTAGCTGATGCTCTTGAA
AGAAGCGAGCGGGTCGGCCCCACGGATGGACGACCTTCTCCCTCGGTTGG
TGAAATCTCACGCGGGACCTCGGGCGGTATCGCTGCTGACGGAGGTATCC
CGATCCGTCTCGGAGGTCTGGATTCGTCTTCATCTATCACAAACATTGGC
AACGGCGACCAGTTGCCGCGACGCAAGAAAAATAAGCGGGGGCGAGGGGG
GTATGGGACCAACCCGGGCAAGGAAATATATAGTAGTCCCCGACCGCCGC
CTTCTATATTGCCCGCAAATGGAGGAGGAGGCCACGGCGAAACGGCAGAC
GTTTGTGGCAACAAAGAGCCGACGCCAGGGCGTTCTTCCGACGGTGCCAA
TAACGATGTTTTAACGAAGTGTGCGAGGGAGACGACTGCGGGGGTCGAGC
CACCTATTCGAGTAATGGACAGTCGACCTGCTATGTCGAGCCGGGCCGTT
ACTTCGTCAACGCGATCGGGTTTCCTGCCGAACGCAAACTCCCACAAAGC
CACGCCCGTGGCTCGTGTCATCGAGGAGGCCATGCCACGAATCACAGTCG
CGCCGTTTCAGCACAAGGGAGGACCAAAAGGAGCGCCTAAAGCGGAGGTG
CCCCCCCCGCCATCAAAATCTCAGTCTGGCGGTACCAGCCAAGGGAGACT
TATGGCGCGCATGGAGCGAGAAACGCCTGAGCGACAGATCGACAGTCAGA
ATGAGGGCGGCGCGGCCACGAAGAGGAGCTCGAACAGCGAGGGACAGCCT
AGCAAAAAGAAAAAGAGGATCAAGGGAAAGAAGAGCGCGAAGATACGCTC
TGGTGGAAGCGGAGACGGCGGAGCAGATGCCATCGATGACATATTTGGCT
CTCTACTTTGACGGCTTATGCAGTGCAGCCGCCTTTACCCCCTGTGACGT
ATGGTTCCATTAAAGTGCGTTCGCTGTAGTTTAGCGATCGTCGCAGTGCA
AGCGCGCGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9450:5041..7301+

>mRNA_S-dermatodea_contig9450.17486.1 ID=mRNA_S-dermatodea_contig9450.17486.1|Name=mRNA_S-dermatodea_contig9450.17486.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at S-dermatodea_contig9450:5041..7301+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACTTCGGCTCCGAAGGCCACCGAGCTCCAACCGTTTTCCCTTTCGAA
GCGCAGGCAGCCGACACAACCACAGCGTGATCAAATAGCCGCATCAACGG
CGCTAGCCGAAGATGCCTCGATGCCCTCGGTAGCCTCCGGCAACAGTGGT
GGGGTATCGGGCGGGGGCGCTTGTGCAGTTGGAGCAAGCTCGCCTTCGAC
AGTGCCGGCCGACGCATCAGCTGAGCAGACGATGTGGGTGATCGATCGGG
GACCAGCCAGATATTCTTCTCAGGCGGAGTTGGCGGTGATGGCGGCAGTG
GCCACATCCCGCAGAAGCGACGCCCTTCAAGAGAAGGGCAGTCGACGTTG
CTCTGGAGCTGATGATAGGTCAGATGCAGGCTTCAATTCCGGTGCGGAAC
AAAGTAAGTCCGTCGGTGACGGCGATCTCGAGGCGTCCGTGGACGGCGTC
GACGTCAAGCTCAGCGGTCGTCCTGCCAACGTGTCAGGCGTGACGGCCGT
AGCTGATGCTCTTGAAAGAAGCGAGCGGGTCGGCCCCACGGATGGACGAC
CTTCTCCCTCGGTTGGTGAAATCTCACGCGGGACCTCGGGCGGTATCGCT
GCTGACGGAGGTATCCCGATCCGTCTCGGAGGTCTGGATTCGTCTTCATC
TATCACAAACATTGGCAACGGCGACCAGTTGCCGCGACGCAAGAAAAATA
AGCGGGGGCGAGGGGGGTATGGGACCAACCCGGGCAAGGAAATATATAGT
AGTCCCCGACCGCCGCCTTCTATATTGCCCGCAAATGGAGGAGGAGGCCA
CGGCGAAACGGCAGACGTTTGTGGCAACAAAGAGCCGACGCCAGGGCGTT
CTTCCGACGGTGCCAATAACGATGTTTTAACGAAGTGTGCGAGGGAGACG
ACTGCGGGGGTCGAGCCACCTATTCGAGTAATGGACAGTCGACCTGCTAT
GTCGAGCCGGGCCGTTACTTCGTCAACGCGATCGGGTTTCCTGCCGAACG
CAAACTCCCACAAAGCCACGCCCGTGGCTCGTGTCATCGAGGAGGCCATG
CCACGAATCACAGTCGCGCCGTTTCAGCACAAGGGAGGACCAAAAGGAGC
GCCTAAAGCGGAGGTGCCCCCCCCGCCATCAAAATCTCAGTCTGGCGGTA
CCAGCCAAGGGAGACTTATGGCGCGCATGGAGCGAGAAACGCCTGAGCGA
CAGATCGACAGTCAGAATGAGGGCGGCGCGGCCACGAAGAGGAGCTCGAA
CAGCGAGGGACAGCCTAGCAAAAAGAAAAAGAGGATCAAGGGAAAGAAGA
GCGCGAAGATACGCTCTGGTGGAAGCGGAGACGGCGGAGCAGATGCCATC
GATGACATATTTGGCTCTCTACTTTGAATGACTTCGGCTCCGAAGGCCAC
CGAGCTCCAACCGTTTTCCCTTTCGAAGCGCAGGCAGCCGACACAACCAC
AGCGTGATCAAATAGCCGCATCAACGGCGCTAGCCGAAGATGCCTCGATG
CCCTCGGTAGCCTCCGGCAACAGTGGTGGGGTATCGGGCGGGGGCGCTTG
TGCAGTTGGAGCAAGCTCGCCTTCGACAGTGCCGGCCGACGCATCAGCTG
AGCAGACGATGTGGGTGATCGATCGGGGACCAGCCAGATATTCTTCTCAG
GCGGAGTTGGCGGTGATGGCGGCAGTGGCCACATCCCGCAGAAGCGACGC
CCTTCAAGAGAAGGGCAGTCGACGTTGCTCTGGAGCTGATGATAGGTCAG
ATGCAGGCTTCAATTCCGGTGCGGAACAAAGTAAGTCCGTCGGTGACGGC
GATCTCGAGGCGTCCGTGGACGGCGTCGACGTCAAGCTCAGCGGTCGTCC
TGCCAACGTGTCAGGCGTGACGGCCGTAGCTGATGCTCTTGAAAGAAGCG
AGCGGGTCGGCCCCACGGATGGACGACCTTCTCCCTCGGTTGGTGAAATC
TCACGCGGGACCTCGGGCGGTATCGCTGCTGACGGAGGTATCCCGATCCG
TCTCGGAGGTCTGGATTCGTCTTCATCTATCACAAACATTGGCAACGGCG
ACCAGTTGCCGCGACGCAAGAAAAATAAGCGGGGGCGAGGGGGGTATGGG
ACCAACCCGGGCAAGGAAATATATAGTAGTCCCCGACCGCCGCCTTCTAT
ATTGCCCGCAAATGGAGGAGGAGGCCACGGCGAAACGGCAGACGTTTGTG
GCAACAAAGAGCCGACGCCAGGGCGTTCTTCCGACGGTGCCAATAACGAT
GTTTTAACGAAGTGTGCGAGGGAGACGACTGCGGGGGTCGAGCCACCTAT
TCGAGTAATGGACAGTCGACCTGCTATGTCGAGCCGGGCCGTTACTTCGT
CAACGCGATCGGGTTTCCTGCCGAACGCAAACTCCCACAAAGCCACGCCC
GTGGCTCGTGTCATCGAGGAGGCCATGCCACGAATCACAGTCGCGCCGTT
TCAGCACAAGGGAGGACCAAAAGGAGCGCCTAAAGCGGAGGTGCCCCCCC
CGCCATCAAAATCTCAGTCTGGCGGTACCAGCCAAGGGAGACTTATGGCG
CGCATGGAGCGAGAAACGCCTGAGCGACAGATCGACAGTCAGAATGAGGG
CGGCGCGGCCACGAAGAGGAGCTCGAACAGCGAGGGACAGCCTAGCAAAA
AGAAAAAGAGGATCAAGGGAAAGAAGAGCGCGAAGATACGCTCTGGTGGA
AGCGGAGACGGCGGAGCAGATGCCATCGATGACATATTTGGCTCTCTACT
TTGA
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