mRNA_S-dermatodea_contig9450.17485.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9450.17485.1
Unique NamemRNA_S-dermatodea_contig9450.17485.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9450.17485.1 vs. uniprot
Match: A0A6H5KLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 ASKHLAHQVSQTYFMALSVVLLACLARVFACSLHLGGRLLEVHGALLRTVL 153
            ASK LAHQVSQTYFMALS  +LA +AR+FAC+LHLGGRLL VHGALLRT L
Sbjct:   18 ASKLLAHQVSQTYFMALSTAILASVARLFACNLHLGGRLLLVHGALLRTFL 68
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BLAST of mRNA_S-dermatodea_contig9450.17485.1 vs. uniprot
Match: D7FT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT04_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.270e-16
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 ASKHLAHQVSQTYFMALSVVLLACLARVFACSLHLGGRLLEVHGALLRTVL 153
            ASK LAHQVSQTYFMALS V LA LAR+FAC+LHLGGRLL VHGALLRT L
Sbjct:   95 ASKLLAHQVSQTYFMALSTVFLASLARLFACNLHLGGRLLLVHGALLRTFL 145
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9450.17485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLL0_9PHAE1.560e-1680.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT04_ECTSI2.270e-1684.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9450contigS-dermatodea_contig9450:2675..4623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_004320.1
Exons4
Model size352
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9450.17485.1prot_S-dermatodea_contig9450.17485.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9450 2675..4622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925409.18657-CDS-S-dermatodea_contig9450:2674..26981622925409.18657-CDS-S-dermatodea_contig9450:2674..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 2675..2698 +
1694079914.084724-CDS-S-dermatodea_contig9450:2674..26981694079914.084724-CDS-S-dermatodea_contig9450:2674..2698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 2675..2698 +
1622925409.1997886-CDS-S-dermatodea_contig9450:2923..30521622925409.1997886-CDS-S-dermatodea_contig9450:2923..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 2924..3052 +
1694079914.0952032-CDS-S-dermatodea_contig9450:2923..30521694079914.0952032-CDS-S-dermatodea_contig9450:2923..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 2924..3052 +
1622925409.2112446-CDS-S-dermatodea_contig9450:3930..40221622925409.2112446-CDS-S-dermatodea_contig9450:3930..4022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 3931..4022 +
1694079914.1060169-CDS-S-dermatodea_contig9450:3930..40221694079914.1060169-CDS-S-dermatodea_contig9450:3930..4022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 3931..4022 +
1622925409.2213697-CDS-S-dermatodea_contig9450:4516..46221622925409.2213697-CDS-S-dermatodea_contig9450:4516..4622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 4517..4622 +
1694079914.1195922-CDS-S-dermatodea_contig9450:4516..46221694079914.1195922-CDS-S-dermatodea_contig9450:4516..4622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9450 4517..4622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9450.17485.1

>prot_S-dermatodea_contig9450.17485.1 ID=prot_S-dermatodea_contig9450.17485.1|Name=mRNA_S-dermatodea_contig9450.17485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
ASKHLAHQVSQTYFMALSVVLLACLARVFACSLHLGGRLLEVHGALLRTV
LAQPCTSECLSPGALVACRIPEETVCLLACLRNAAGDHKTSGTMKAPNSR
DATTTQLFEAAAAGAGA
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mRNA from alignment at S-dermatodea_contig9450:2675..4623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9450.17485.1 ID=mRNA_S-dermatodea_contig9450.17485.1|Name=mRNA_S-dermatodea_contig9450.17485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1949bp|location=Sequence derived from alignment at S-dermatodea_contig9450:2675..4623+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGAAACACCTTGCACACCAGGTGCCGCGGGCAGAACGGAAATTAGT
GCTGGGGTGGGAGTGCTAAGTTTGCCGAGATGCGGTGGTTGTGCGTGGGT
GGACAGTACCATCGTTCTTCGAGGGAAACATTGGGGGCGTGATGTATCCA
GCGTTCCATGATATTGGTCTCTTTCCCTCGGCCACAGCTTGATACCAGGC
ATCCTCTGCGCCTTCGTTCAATCCACGCTGTCTTGGCGTGTGTGTGCAGG
TGTCTCAAACGTACTTCATGGCCTTGTCGGTGGTCCTTCTCGCCTGCTTG
GCGCGGGTATTCGCATGCAGCCTCCACCTGGGCGGGAGGCTACTCGAGGT
GCACGGGGCTCTGCTGCGGACGGTGTTGGTGAGACTGCCCTTCATTACTG
GTGCCCTGCCCTGCCGTCACTGTTGTCGTTGGTTACTTCGCAGTTCTTGC
CACACCAGGTCCCGGCAAGCCCTGCTGATCGCACTCCGTGGTCTCAAGAT
GGCGGGGCAAGCGCCGTGACAGGAAATTATATCGGCTTGTCGCACCTTGG
AACACACAGGCGTGCGCGCGGCGTTGCTGTTGCTCGTTGTGCGGTCGATG
CGAGCTGCTTGTCACAGAAAATAGTCAGCTATTCGTCACGAAAGGTTGAA
TCCTTGATATGCATTTATTGTGAAACCAATCAACCGATCAGGCTCTATGT
TTCTAAGTGTTTCCGGAACAGAGGACGGGCGGGGCGTGAGAGGGCGTTGC
CAAGGCCGAAGCAGAACTACGCAGGGCGTATCGTGTGCCTCCCACATATT
GCAACGGGTTTTATCTCAAGCGCTTTTCTGATCGGTTCATTGATGTGCCA
AATGAAGCAAACAGCAGGTTTGATGGGTCGAATACGGCTGCCGCTCGAAA
ATCGCAACGATTAGTTGATCGGGCCTTGGCGGGTGAACCGTGAGTTGTTC
CTTACGTCGACGCAGGTCCCTGCTTTTATTGGATGGTCAGTGTGCGATTC
GAGCGAATTTCATCTTTGACAAATATGATATCTTACATTTATCTTTACAG
GCCATCATCCTCAACACCGAACGCCTACCATCACGAGACCACCGTAGACC
TAAAAGGGTATTGGTCGGCACTCTATTGCAGTGGTGCGGACATCTAGACG
ATTGGAGCCCTGCCCCCCCCCCCCCACTCCCCACTGATTGCCGCTGTTAG
TGCTGAAATTGCTTCCCTGCCTGGTCTTGCGTGCCGTCGATCTCCTGCAA
CTCCAGGCACAGCCTTGCACCTCTGAGTGCCTGTCCCCCGGCGCCCTGGT
GGCTTGTCGGATCCCGGAGGAAACGGTTTGCCTCTTGGCTTGTCTAAGGC
AAGCCAGCAATGTTGGTTTTGGGTCGCGCTCGTGTAGCGTCCGGTTGAGC
GGGCTTGCCAGCTTGCTCTTCCGCCCCCTTTGAATGTCTGGACTGGCACA
TTGCTGCTTGGGTTGATAGGAGGGTATCATACTCGGGAGTCCAAGGGCAG
CGATAAATCGCAATGTCTGGAAGATTCATGACGGGGATATTTCGGTTGAC
AGTGCTCGATTAAGTTGTGTATTGCAGGCGTTCTTTTTGTTCGCTTCGTG
GCCTCGTGGCAACAGCACACGCGCACAATACCGATATTTCCCCGCTTATA
ATATTTTCGTCCACGGCGCGTCCCAGTTTCTGCCCGCCTTCGGCTGATCC
AGCTTTCCCGGCCGATTCGCTCCCTCAGACGGTCTGTCCTTTTCATCTTC
CGTCTTCGCTCCGACTGAGAGACCCCATTCGTGTGTCTTCGCACTTTGAA
TTTACCACGCCCTCTCACCACTGTATCTCACCTTCCAAACAGGAACGCGG
CTGGTGATCACAAAACGTCGGGGACGATGAAGGCACCGAACAGCCGAGAC
GCCACAACCACACAGTTGTTCGAGGCAGCAGCCGCCGGCGCCGGCGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9450:2675..4623+

>mRNA_S-dermatodea_contig9450.17485.1 ID=mRNA_S-dermatodea_contig9450.17485.1|Name=mRNA_S-dermatodea_contig9450.17485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig9450:2675..4623+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCGAAACACCTTGCACACCAGGCGTCGAAACACCTTGCACACCAGGT
GTCTCAAACGTACTTCATGGCCTTGTCGGTGGTCCTTCTCGCCTGCTTGG
CGCGGGTATTCGCATGCAGCCTCCACCTGGGCGGGAGGCTACTCGAGGTG
CACGGGGCTCTGCTGCGGACGGTGTTGGTGTCTCAAACGTACTTCATGGC
CTTGTCGGTGGTCCTTCTCGCCTGCTTGGCGCGGGTATTCGCATGCAGCC
TCCACCTGGGCGGGAGGCTACTCGAGGTGCACGGGGCTCTGCTGCGGACG
GTGTTGGCACAGCCTTGCACCTCTGAGTGCCTGTCCCCCGGCGCCCTGGT
GGCTTGTCGGATCCCGGAGGAAACGGTTTGCCTCTTGGCTTGTCTAAGGC
ACAGCCTTGCACCTCTGAGTGCCTGTCCCCCGGCGCCCTGGTGGCTTGTC
GGATCCCGGAGGAAACGGTTTGCCTCTTGGCTTGTCTAAGGAACGCGGCT
GGTGATCACAAAACGTCGGGGACGATGAAGGCACCGAACAGCCGAGACGC
CACAACCACACAGTTGTTCGAGGCAGCAGCCGCCGGCGCCGGCGCCGAAC
GCGGCTGGTGATCACAAAACGTCGGGGACGATGAAGGCACCGAACAGCCG
AGACGCCACAACCACACAGTTGTTCGAGGCAGCAGCCGCCGGCGCCGGCG
CC
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