mRNA_S-dermatodea_contig945.17482.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig945.17482.1
Unique NamemRNA_S-dermatodea_contig945.17482.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig945.17482.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.260e-23
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:  307 TLKYIAWTESRCWTFFSHCSNAGGTSTRKNNPCAACDVMMLGLCCISRSYQFCQTVGTNALESYNGNIAALCPKRSDFAGSAFARSHIGVLKRVMPGGLQQVSSEMRTLLILEPLSEESE 666
            TL+++AW ES  WTFFS C+N  G +      C AC V +L      R++ FC  +GTNALES+NG++AA+  KRSDF  S   R+ + +LKR  PGG ++V   +R    L PL+  +E
Sbjct:   20 TLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAVQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAE 139
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BLAST of mRNA_S-dermatodea_contig945.17482.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.020e-22
Identity = 67/164 (40.85%), Postives = 91/164 (55.49%), Query Frame = 1 
Query:  307 TLKYIAWTESRCWTFFSHCSNAGGTSTRKNNPCAACDVMMLGLCCISRSYQFCQTVGTNALESYNGNIAALCPKRSDFAGSAFARSHIGVLKRVMPGGLQQVSSEMRTLLILEPLS---EESEAVVRDKGTHNRIGR---SSAVHVTMSVEKRTRKYERSVRQT 780
            TL+++AW ES  WTFFS C+N  G +      C AC   +L      R++ FC  +GTNALES+NG++AA+  KRSDF  S   R+ + +LKR  PGG ++V   +R    L PL+   EE   V + K  H + G    SSA     S  K  RK+ RS+ QT
Sbjct:  328 TLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLKAGHEVWSSAAVRAGSDSKLKRKHRRSLVQT 491
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BLAST of mRNA_S-dermatodea_contig945.17482.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.020e-21
Identity = 67/164 (40.85%), Postives = 90/164 (54.88%), Query Frame = 1 
Query:  307 TLKYIAWTESRCWTFFSHCSNAGGTSTRKNNPCAACDVMMLGLCCISRSYQFCQTVGTNALESYNGNIAALCPKRSDFAGSAFARSHIGVLKRVMPGGLQQVSSEMRTLLILEPLS---EESEAVVRDKGTHNRIGR---SSAVHVTMSVEKRTRKYERSVRQT 780
            TL+++AW ES  WTFFS C+N  G +      C AC   +L      R++ FC  +GTNALES+NG++AA+  KRSDF  S   R+ + +LKR  PGG ++V   +R    L PL+   EE   V + K  H   G    SSA     S  K  RK+ RS+ QT
Sbjct:  470 TLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLEAGHEVWSSAAVRVGSDSKLKRKHRRSLVQT 633
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig945.17482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGM5_9PHAE1.260e-2343.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYT6_9PHAE3.020e-2240.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KX32_9PHAE1.020e-2140.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig945contigS-dermatodea_contig945:2987..5684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1252
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig945.17482.1prot_S-dermatodea_contig945.17482.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig945 4854..5684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.9151087-UTR-S-dermatodea_contig945:2986..31441622925408.9151087-UTR-S-dermatodea_contig945:2986..3144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 2987..3144 +
1694079913.9231806-UTR-S-dermatodea_contig945:2986..31441694079913.9231806-UTR-S-dermatodea_contig945:2986..3144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 2987..3144 +
1622925408.9264448-UTR-S-dermatodea_contig945:3316..34601622925408.9264448-UTR-S-dermatodea_contig945:3316..3460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 3317..3460 +
1694079913.9314017-UTR-S-dermatodea_contig945:3316..34601694079913.9314017-UTR-S-dermatodea_contig945:3316..3460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 3317..3460 +
1622925408.9442816-UTR-S-dermatodea_contig945:4735..48531622925408.9442816-UTR-S-dermatodea_contig945:4735..4853Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 4736..4853 +
1694079913.9395437-UTR-S-dermatodea_contig945:4735..48531694079913.9395437-UTR-S-dermatodea_contig945:4735..4853Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 4736..4853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.9611406-CDS-S-dermatodea_contig945:4853..56841622925408.9611406-CDS-S-dermatodea_contig945:4853..5684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 4854..5684 +
1694079913.9480903-CDS-S-dermatodea_contig945:4853..56841694079913.9480903-CDS-S-dermatodea_contig945:4853..5684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 4854..5684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig945.17482.1

>prot_S-dermatodea_contig945.17482.1 ID=prot_S-dermatodea_contig945.17482.1|Name=mRNA_S-dermatodea_contig945.17482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=277bp
MMLGLCCISRSYQFCQTVGTNALESYNGNIAALCPKRSDFAGSAFARSHI
GVLKRVMPGGLQQVSSEMRTLLILEPLSEESEAVVRDKGTHNRIGRSSAV
HVTMSVEKRTRKYERSVRQTEMVRSAKEAVSKETHLSEGAALVAEAAAKS
KEASKNHGKAAGRKAGVYTAAGGSHQAQEADADAARMSRPKPISAARKRK
TGTAAEGGPAKKRKSGVCKACSVAGVSTEFRSSKTHQRKGGLCTEVQLAW
KAHTESVAEQEVGRRSAEGVASPRAPE
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mRNA from alignment at S-dermatodea_contig945:2987..5684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig945.17482.1 ID=mRNA_S-dermatodea_contig945.17482.1|Name=mRNA_S-dermatodea_contig945.17482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2698bp|location=Sequence derived from alignment at S-dermatodea_contig945:2987..5684+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCAGCGGCGAGGGTGGCAAGGACACGGAGGCATCGGGGCGCCTCTTA
AATTTGCTTCGGTTAGTGCGAGAAGTTGTGGAATGCTGCAACGATAATAT
CAAGGTGGTGACGGAAGAGATGGTCAAACTGGACGACGCCTGCAAGAAAC
TGTACCCGGTAAGAGTTATACCTCTCTACCACTCGCCGGAATTATAGCGA
GTCCGATGGCATACACCATTGCAGTCGCTTGCACCGTTTGCGTGCAATCA
TTTTTCAGTAGATGATGTTTCCCCGCCGGATGACACTTCGTTGCTTGTCT
TCGTTGCTTGTATTTCTTGCAATTTATCAGTCAACAACCGCCGCCCACAG
GAAGCAATTCCCAGTGACCTTGGAAGGGATGGAGGATTCGGGGTTCCCGA
ATGGCTCTGAAGAACCCTCGTTCAAGAGTTCAACTGACACGCCAGCTGTG
AACGTCACGACGGCTAAGATCAAGGCAAGTGTCGCACGCCTCCCCGCTCA
GTTGTCCAGCCCCACGAGTATATTATCCGATCGCGACACGATTTGGTCAC
AGTAGACTTTCGCTTGTGTAGGTTTTTTCCCAACTCAAATAGTATCGTTT
TTGCAACACCAGTGTCCATACGCGCTTCCAGGAGTGTTAAAATTTGGACC
CCTTGATCTTCCACCACGACATATAGTACCTCAACACTTGATGCGAGACC
ATTATGACACTCATCATCACCATCCCTGTTGCCCCCGATGTCATAGATCT
GGTAGGCGGGGAAGGAAGATTACATTGCTAAGGTGGTGGCGGTTGGTAAG
GAAGAGAAAGCCTTTCGCGAAGGGGGGGGGGGGGGGAAACCGGGCCTGGT
GACAAAGGGACGCAGGCCCCACCGGGAGGCCACCCACCNNNNNNNNNNGG
GAGAAGGGGGGGCGGGTTATTGGGAAAGCCGACCCCTATGGCAGGGGGGG
GGGGGGGGGATCACCGTGCTCGTGACCAACGGACGCAGGACCCACCGGTG
AGACCTCCACCCCACGTGGTGCCCCGTGGTGGGTGTGTCCATTGTAGCTG
TTTGGGCGGCGAGACGTTTGTGTCCCCGTGTGGAACACGGGGAAAAACGG
TGACACCGGAGCTCGTTTTGTCGCGAAAAACTCCAAGTCGATGTGCGTGA
TTATTGTTTTAACCCCTTCTTTAAACAATATTTTCGTGCGTTTTCACGGG
ACGTGTTTCCTCCGAAACAATAAAACAATTACAAGACACTGGTCGGGCAT
TGGGATTCTGATTTATTTGTAGAGAGGGAAGGTGGCCCAAGCGAACTCGA
AGGAGGTCAACGTTGTGTATGATACAACAGGCTCCCACTGTACCTCCCAA
TGTATCCTCCTTCACCCCTCCCCCCCTCCACACCCCAAATCACCACCTCC
CCCCAAACGCCCGTGAAACGGTGTATATCGTAATAACCGTAGTAACGGGA
CGTCGGCTGCCAGATTTGGCGAGGAAATCAGCACGTCACCTTTATCCCTT
ACACACGGCCAATCCATCCGGTGTAGGTAAAACACACAATATATATATTT
ATATTTTTTACTGTGGCGCGCCCGAGGGACAGATACGCACGCCGACTGAA
GTACATACGGATACTATTATAATATAGATGCCTCTTGTTGTTTTGTATTG
CGTTTTGATACGAGATAAGAAGCGCATGCATCGTGTCAATTCCGTCAAAT
TTGAATATTTATGGCGGTTAACGTGGCCTATTCCGACGCGTTCTTGCAGG
GACACGTTGAAGTATATCGCCTGGACGGAGTCTCGCTGCTGGACGTTTTT
TTCTCACTGCAGTAACGCCGGGGGCACGTCGACCAGGAAGAACAATCCGT
GCGCGGCTTGCGACGTGATGATGCTGGGTCTGTGCTGTATCTCCAGGTCG
TACCAGTTCTGCCAAACCGTCGGCACGAACGCCCTCGAGAGTTACAACGG
CAATATCGCCGCGCTCTGCCCAAAGCGAAGCGACTTCGCAGGGTCTGCAT
TCGCCCGGTCTCATATCGGGGTCCTGAAGCGCGTCATGCCTGGCGGATTG
CAACAGGTATCATCCGAGATGCGCACACTCCTAATTCTTGAGCCTTTGTC
GGAGGAAAGCGAGGCGGTGGTACGCGACAAAGGTACACACAACCGAATTG
GCCGTAGCTCCGCAGTCCACGTGACGATGTCGGTCGAAAAGAGGACAAGG
AAGTACGAGAGGAGTGTGCGCCAGACAGAAATGGTCAGAAGCGCCAAGGA
AGCCGTATCGAAGGAAACCCACCTTTCGGAGGGGGCCGCCCTCGTGGCGG
AGGCGGCCGCTAAGAGCAAAGAGGCGTCGAAGAACCATGGGAAGGCGGCG
GGGAGGAAGGCTGGGGTGTACACTGCAGCCGGGGGCAGCCATCAGGCGCA
AGAGGCAGACGCCGATGCTGCACGCATGAGCAGGCCTAAGCCAATCTCGG
CAGCGAGGAAGCGCAAGACTGGTACCGCGGCCGAGGGGGGGCCTGCGAAG
AAGCGGAAGTCGGGTGTGTGCAAGGCATGCTCTGTTGCTGGCGTCAGCAC
GGAGTTCCGGTCTTCAAAAACACACCAGCGAAAGGGGGGGTTGTGCACGG
AGGTACAATTGGCGTGGAAGGCGCACACCGAGAGCGTGGCGGAGCAGGAG
GTTGGGAGGCGAAGCGCGGAGGGTGTGGCGTCCCCTCGCGCTCCGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig945:2987..5684+

>mRNA_S-dermatodea_contig945.17482.1 ID=mRNA_S-dermatodea_contig945.17482.1|Name=mRNA_S-dermatodea_contig945.17482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig945:2987..5684+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCTGGGTCTGTGCTGTATCTCCAGGTCGTACCAGTTCTGCCAAAC
CGTCGGCACGAACGCCCTCGAGAGTTACAACGGCAATATCGCCGCGCTCT
GCCCAAAGCGAAGCGACTTCGCAGGGTCTGCATTCGCCCGGTCTCATATC
GGGGTCCTGAAGCGCGTCATGCCTGGCGGATTGCAACAGGTATCATCCGA
GATGCGCACACTCCTAATTCTTGAGCCTTTGTCGGAGGAAAGCGAGGCGG
TGGTACGCGACAAAGGTACACACAACCGAATTGGCCGTAGCTCCGCAGTC
CACGTGACGATGTCGGTCGAAAAGAGGACAAGGAAGTACGAGAGGAGTGT
GCGCCAGACAGAAATGGTCAGAAGCGCCAAGGAAGCCGTATCGAAGGAAA
CCCACCTTTCGGAGGGGGCCGCCCTCGTGGCGGAGGCGGCCGCTAAGAGC
AAAGAGGCGTCGAAGAACCATGGGAAGGCGGCGGGGAGGAAGGCTGGGGT
GTACACTGCAGCCGGGGGCAGCCATCAGGCGCAAGAGGCAGACGCCGATG
CTGCACGCATGAGCAGGCCTAAGCCAATCTCGGCAGCGAGGAAGCGCAAG
ACTGGTACCGCGGCCGAGGGGGGGCCTGCGAAGAAGCGGAAGTCGGGTGT
GTGCAAGGCATGCTCTGTTGCTGGCGTCAGCACGGAGTTCCGGTCTTCAA
AAACACACCAGCGAAAGGGGGGGTTGTGCACGGAGGTACAATTGGCGTGG
AAGGCGCACACCGAGAGCGTGGCGGAGCAGGAGGTTGGGAGGCGAAGCGC
GGAGGGTGTGGCGTCCCCTCGCGCTCCGGAGATGATGCTGGGTCTGTGCT
GTATCTCCAGGTCGTACCAGTTCTGCCAAACCGTCGGCACGAACGCCCTC
GAGAGTTACAACGGCAATATCGCCGCGCTCTGCCCAAAGCGAAGCGACTT
CGCAGGGTCTGCATTCGCCCGGTCTCATATCGGGGTCCTGAAGCGCGTCA
TGCCTGGCGGATTGCAACAGGTATCATCCGAGATGCGCACACTCCTAATT
CTTGAGCCTTTGTCGGAGGAAAGCGAGGCGGTGGTACGCGACAAAGGTAC
ACACAACCGAATTGGCCGTAGCTCCGCAGTCCACGTGACGATGTCGGTCG
AAAAGAGGACAAGGAAGTACGAGAGGAGTGTGCGCCAGACAGAAATGGTC
AGAAGCGCCAAGGAAGCCGTATCGAAGGAAACCCACCTTTCGGAGGGGGC
CGCCCTCGTGGCGGAGGCGGCCGCTAAGAGCAAAGAGGCGTCGAAGAACC
ATGGGAAGGCGGCGGGGAGGAAGGCTGGGGTGTACACTGCAGCCGGGGGC
AGCCATCAGGCGCAAGAGGCAGACGCCGATGCTGCACGCATGAGCAGGCC
TAAGCCAATCTCGGCAGCGAGGAAGCGCAAGACTGGTACCGCGGCCGAGG
GGGGGCCTGCGAAGAAGCGGAAGTCGGGTGTGTGCAAGGCATGCTCTGTT
GCTGGCGTCAGCACGGAGTTCCGGTCTTCAAAAACACACCAGCGAAAGGG
GGGGTTGTGCACGGAGGTACAATTGGCGTGGAAGGCGCACACCGAGAGCG
TGGCGGAGCAGGAGGTTGGGAGGCGAAGCGCGGAGGGTGTGGCGTCCCCT
CGCGCTCCGGAG
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