mRNA_S-dermatodea_contig945.17481.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig945.17481.1
Unique NamemRNA_S-dermatodea_contig945.17481.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig945.17481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig945contigS-dermatodea_contig945:2987..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig945.17481.1prot_S-dermatodea_contig945.17481.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig945 3106..3741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.6351442-UTR-S-dermatodea_contig945:2986..31051622925408.6351442-UTR-S-dermatodea_contig945:2986..3105Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 2987..3105 +
1694079913.7158837-UTR-S-dermatodea_contig945:2986..31051694079913.7158837-UTR-S-dermatodea_contig945:2986..3105Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 2987..3105 +
1622925408.6900153-UTR-S-dermatodea_contig945:3741..37961622925408.6900153-UTR-S-dermatodea_contig945:3741..3796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 3742..3796 +
1694079913.7657268-UTR-S-dermatodea_contig945:3741..37961694079913.7657268-UTR-S-dermatodea_contig945:3741..3796Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 3742..3796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.6469517-CDS-S-dermatodea_contig945:3105..31441622925408.6469517-CDS-S-dermatodea_contig945:3105..3144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3106..3144 +
1694079913.7281587-CDS-S-dermatodea_contig945:3105..31441694079913.7281587-CDS-S-dermatodea_contig945:3105..3144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3106..3144 +
1622925408.6579094-CDS-S-dermatodea_contig945:3316..34601622925408.6579094-CDS-S-dermatodea_contig945:3316..3460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3317..3460 +
1694079913.738511-CDS-S-dermatodea_contig945:3316..34601694079913.738511-CDS-S-dermatodea_contig945:3316..3460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3317..3460 +
1622925408.6781769-CDS-S-dermatodea_contig945:3732..37411622925408.6781769-CDS-S-dermatodea_contig945:3732..3741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3733..3741 +
1694079913.753203-CDS-S-dermatodea_contig945:3732..37411694079913.753203-CDS-S-dermatodea_contig945:3732..3741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 3733..3741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig945.17481.1

>prot_S-dermatodea_contig945.17481.1 ID=prot_S-dermatodea_contig945.17481.1|Name=mRNA_S-dermatodea_contig945.17481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MVKLDDACKKLYPSTTAAHRKQFPVTLEGMEDSGFPNGSEEPSFKSSTDT
PAVNVTTAKIKIW*
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mRNA from alignment at S-dermatodea_contig945:2987..3796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig945.17481.1 ID=mRNA_S-dermatodea_contig945.17481.1|Name=mRNA_S-dermatodea_contig945.17481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig945:2987..3796+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCAGCGGCGAGGGTGGCAAGGACACGGAGGCATCGGGGCGCCTCTTA
AATTTGCTTCGGTTAGTGCGAGAAGTTGTGGAATGCTGCAACGATAATAT
CAAGGTGGTGACGGAAGAGATGGTCAAACTGGACGACGCCTGCAAGAAAC
TGTACCCGGTAAGAGTTATACCTCTCTACCACTCGCCGGAATTATAGCGA
GTCCGATGGCATACACCATTGCAGTCGCTTGCACCGTTTGCGTGCAATCA
TTTTTCAGTAGATGATGTTTCCCCGCCGGATGACACTTCGTTGCTTGTCT
TCGTTGCTTGTATTTCTTGCAATTTATCAGTCAACAACCGCCGCCCACAG
GAAGCAATTCCCAGTGACCTTGGAAGGGATGGAGGATTCGGGGTTCCCGA
ATGGCTCTGAAGAACCCTCGTTCAAGAGTTCAACTGACACGCCAGCTGTG
AACGTCACGACGGCTAAGATCAAGGCAAGTGTCGCACGCCTCCCCGCTCA
GTTGTCCAGCCCCACGAGTATATTATCCGATCGCGACACGATTTGGTCAC
AGTAGACTTTCGCTTGTGTAGGTTTTTTCCCAACTCAAATAGTATCGTTT
TTGCAACACCAGTGTCCATACGCGCTTCCAGGAGTGTTAAAATTTGGACC
CCTTGATCTTCCACCACGACATATAGTACCTCAACACTTGATGCGAGACC
ATTATGACACTCATCATCACCATCCCTGTTGCCCCCGATGTCATAGATCT
GGTAGGCGGGGAAGGAAGATTACATTGCTAAGGTGGTGGCGGTTGGTAAG
GAAGAGAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig945:2987..3796+

>mRNA_S-dermatodea_contig945.17481.1 ID=mRNA_S-dermatodea_contig945.17481.1|Name=mRNA_S-dermatodea_contig945.17481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig945:2987..3796+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCAAACTGGACGACGCCTGCAAGAAACTGTACCCGATGGTCAAACT
GGACGACGCCTGCAAGAAACTGTACCCGTCAACAACCGCCGCCCACAGGA
AGCAATTCCCAGTGACCTTGGAAGGGATGGAGGATTCGGGGTTCCCGAAT
GGCTCTGAAGAACCCTCGTTCAAGAGTTCAACTGACACGCCAGCTGTGAA
CGTCACGACGGCTAAGATCAAGTCAACAACCGCCGCCCACAGGAAGCAAT
TCCCAGTGACCTTGGAAGGGATGGAGGATTCGGGGTTCCCGAATGGCTCT
GAAGAACCCTCGTTCAAGAGTTCAACTGACACGCCAGCTGTGAACGTCAC
GACGGCTAAGATCAAGATCTGGTAGATCTGGTAG
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