mRNA_S-dermatodea_contig945.17480.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig945.17480.1
Unique NamemRNA_S-dermatodea_contig945.17480.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig945.17480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig945contigS-dermatodea_contig945:1279..1599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.8621461-UTR-S-dermatodea_contig945:1278..12961622925408.8621461-UTR-S-dermatodea_contig945:1278..1296Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 1279..1296 +
1694079913.8970485-UTR-S-dermatodea_contig945:1278..12961694079913.8970485-UTR-S-dermatodea_contig945:1278..1296Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig945 1279..1296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.8739645-CDS-S-dermatodea_contig945:1296..15991622925408.8739645-CDS-S-dermatodea_contig945:1296..1599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 1297..1599 +
1694079913.9106638-CDS-S-dermatodea_contig945:1296..15991694079913.9106638-CDS-S-dermatodea_contig945:1296..1599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig945 1297..1599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig945.17480.1prot_S-dermatodea_contig945.17480.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig945 1297..1599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig945.17480.1

>prot_S-dermatodea_contig945.17480.1 ID=prot_S-dermatodea_contig945.17480.1|Name=mRNA_S-dermatodea_contig945.17480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MMVTYSRNLGKDAALHTVCTVTRDGGRYHVHGTEREWEEIVKNGRDEEKQ
KAIGENCLSGSGAKCVLSAAAAEGQGMRQLCLTLQLNGFILTKYAHDQDT
S
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mRNA from alignment at S-dermatodea_contig945:1279..1599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig945.17480.1 ID=mRNA_S-dermatodea_contig945.17480.1|Name=mRNA_S-dermatodea_contig945.17480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at S-dermatodea_contig945:1279..1599+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAAGACGGTGCCTTTCATGATGGTGACGTATTCGCGAAACCTCGGCAA
AGACGCTGCGTTGCATACCGTCTGCACGGTAACTCGCGACGGCGGGAGGT
ACCACGTGCACGGCACGGAGAGGGAGTGGGAGGAGATTGTCAAGAACGGG
AGAGACGAGGAGAAGCAGAAAGCCATAGGGGAAAACTGCCTCTCTGGGTC
GGGCGCAAAGTGTGTCCTCAGCGCGGCCGCAGCGGAAGGGCAAGGGATGC
GCCAGTTGTGTTTGACGTTGCAGCTCAACGGGTTCATCCTCACCAAGTAC
GCACACGACCAGGACACCTCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig945:1279..1599+

>mRNA_S-dermatodea_contig945.17480.1 ID=mRNA_S-dermatodea_contig945.17480.1|Name=mRNA_S-dermatodea_contig945.17480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig945:1279..1599+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGTGACGTATTCGCGAAACCTCGGCAAAGACGCTGCGTTGCATAC
CGTCTGCACGGTAACTCGCGACGGCGGGAGGTACCACGTGCACGGCACGG
AGAGGGAGTGGGAGGAGATTGTCAAGAACGGGAGAGACGAGGAGAAGCAG
AAAGCCATAGGGGAAAACTGCCTCTCTGGGTCGGGCGCAAAGTGTGTCCT
CAGCGCGGCCGCAGCGGAAGGGCAAGGGATGCGCCAGTTGTGTTTGACGT
TGCAGCTCAACGGGTTCATCCTCACCAAGTACGCACACGACCAGGACACC
TCAATGATGGTGACGTATTCGCGAAACCTCGGCAAAGACGCTGCGTTGCA
TACCGTCTGCACGGTAACTCGCGACGGCGGGAGGTACCACGTGCACGGCA
CGGAGAGGGAGTGGGAGGAGATTGTCAAGAACGGGAGAGACGAGGAGAAG
CAGAAAGCCATAGGGGAAAACTGCCTCTCTGGGTCGGGCGCAAAGTGTGT
CCTCAGCGCGGCCGCAGCGGAAGGGCAAGGGATGCGCCAGTTGTGTTTGA
CGTTGCAGCTCAACGGGTTCATCCTCACCAAGTACGCACACGACCAGGAC
ACCTCA
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