mRNA_S-dermatodea_contig94487.17477.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94487.17477.1
Unique NamemRNA_S-dermatodea_contig94487.17477.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.300e-37
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEG YPYSQVACLEGHRQLISDLCWAPDGRSL+SASFD
Sbjct:  137 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFD 203          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.280e-18
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISD 153
            GHTAAVY   FSP  +LVAS GFDRT+RLWEG YP+SQVACL  HRQL+SD
Sbjct:   79 GHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSD 129          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.000e-10
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQ--VACLEGHRQLISDLCWAPDGRSLISASFD 201
            GH  AVY  KFSP   L+AS   D  + LW+ T  ++Q  +A L  H QL+ D+ W+ D RSL+SAS+D
Sbjct:  117 GHGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYD 185          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 58.5 bits (140), Expect = 2.130e-8
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   13 AVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQ--VACLEGHRQLISDLCWAPDGRSLISASFD 201
            AVY  KFSP   L+AS   D  + LW+ T  ++Q  +A L  H QLI D+ W+ D RSL+SAS+D
Sbjct:  134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYD 198          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A1V2LDD2_CYBFA (Protein HIR n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2LDD2_CYBFA)

HSP 1 Score: 53.5 bits (127), Expect = 1.270e-6
Identity = 31/82 (37.80%), Postives = 39/82 (47.56%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPR---------------DSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            GH     VA FSP                 S+VA+AG D++L +W   YP   V   E   + I+DLCW PDG SL  +S D
Sbjct:  237 GHDNPCEVASFSPVLYEVESPGASKEKKISSVVATAGHDKSLAIWNNMYPRPVVVFEEFSMKTITDLCWTPDGSSLFVSSLD 318          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A4V0HZD1_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HZD1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.750e-6
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQL----------ISDLCWAPDGRSLISASFD 201
            GHT  +Y    SP   L+ASAGFD+T+RLW  T    + + L GH +           ++ + +APD RSLIS  FD
Sbjct:  889 GHTREIYALAMSPDGDLLASAGFDQTVRLWS-TEDGQERSTLWGHARRSSSGEVQPVGVTSVAFAPDRRSLISVGFD 964          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A6A4VB37_AMPAM (WD repeat, SAM and U-box domain-containing protein 1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VB37_AMPAM)

HSP 1 Score: 52.8 bits (125), Expect = 2.330e-6
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            HT  V    FSP    +ASAG D+T+RLW+ T  ++ +  L GH + ++  C++ DGR LIS S D
Sbjct:  249 HTGVVMDVHFSPSGRQLASAGGDKTVRLWD-TESWTLLRTLHGHSRYVTCCCFSGDGRLLISGSND 313          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: UPI0019FD8BEB (AAA-like domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019FD8BEB)

HSP 1 Score: 52.4 bits (124), Expect = 3.260e-6
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            GH   +Y    SP    +A+AG D+T+RLW+G     +   LE H   +S L ++ DG++LI+AS+D
Sbjct:  558 GHAGGIYDVAVSPSADCIATAGDDKTVRLWDGQGQLLET--LESHTSPVSALAFSQDGQALITASWD 622          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 4.490e-6
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   16 VYVAKFSPRDSLVASAGFDRTLRLWEGTY-PYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            +Y A FSP  SL+A  G+D  + LW G       +  L GH   +S L +APDGR+L+SAS D
Sbjct:    2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGD 64          
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Match: A0A200Q5I6_9MAGN (WD40 repeat n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q5I6_9MAGN)

HSP 1 Score: 51.2 bits (121), Expect = 8.160e-6
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 1
Query:    1 GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLISDLCWAPDGRSLISASFD 201
            GH   V    FSP    +ASA FD++++LW GT     VA   GH   +   CW+ D R L+S S D
Sbjct:  395 GHQQVVNHVSFSPDGQWIASASFDKSVKLWNGTTG-KFVATFRGHVGPVYQTCWSADSRLLLSGSKD 460          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94487.17477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE5.300e-3797.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR1_9STRA5.280e-1874.51WD40-repeat-containing domain protein (Fragment) n... [more]
A0A1V9Z1V2_9STRA5.000e-1046.38Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QW05_SAPDV2.130e-847.69Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V2LDD2_CYBFA1.270e-637.80Protein HIR n=2 Tax=Cyberlindnera fabianii TaxID=3... [more]
A0A4V0HZD1_9BACT1.750e-640.26Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6A4VB37_AMPAM2.330e-642.42WD repeat, SAM and U-box domain-containing protein... [more]
UPI0019FD8BEB3.260e-638.81AAA-like domain-containing protein n=1 Tax=filamen... [more]
A0A7S1NRB8_9EUGL4.490e-644.44Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A200Q5I6_9MAGN8.160e-640.30WD40 repeat n=1 Tax=Macleaya cordata TaxID=56857 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94487contigS-dermatodea_contig94487:94..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog272952.HpaP812042
KEGG koko:K14963
KEGG Pathwayko04934,map04934
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3Q7SN@4776,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.4337692-CDS-S-dermatodea_contig94487:93..2941622925408.4337692-CDS-S-dermatodea_contig94487:93..294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94487 94..294 +
1694079913.5646517-CDS-S-dermatodea_contig94487:93..2941694079913.5646517-CDS-S-dermatodea_contig94487:93..294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94487 94..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94487.17477.1prot_S-dermatodea_contig94487.17477.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94487 94..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94487.17477.1

>prot_S-dermatodea_contig94487.17477.1 ID=prot_S-dermatodea_contig94487.17477.1|Name=mRNA_S-dermatodea_contig94487.17477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
GHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGTYPYSQVACLEGHRQLIS
DLCWAPDGRSLISASFD
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mRNA from alignment at S-dermatodea_contig94487:94..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94487.17477.1 ID=mRNA_S-dermatodea_contig94487.17477.1|Name=mRNA_S-dermatodea_contig94487.17477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig94487:94..294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACACACGGCGGCCGTGTACGTGGCCAAGTTTTCTCCGCGCGATAGCCT CGTCGCGTCGGCCGGGTTCGATCGCACGCTGCGGCTGTGGGAGGGCACGT ACCCGTACAGCCAGGTGGCTTGTCTCGAGGGACACCGGCAGCTGATCAGT GACCTGTGCTGGGCGCCCGACGGTCGGTCGCTCATCAGCGCTTCGTTCGA C
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Coding sequence (CDS) from alignment at S-dermatodea_contig94487:94..294+

>mRNA_S-dermatodea_contig94487.17477.1 ID=mRNA_S-dermatodea_contig94487.17477.1|Name=mRNA_S-dermatodea_contig94487.17477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig94487:94..294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACACACGGCGGCCGTGTACGTGGCCAAGTTTTCTCCGCGCGATAGCCT
CGTCGCGTCGGCCGGGTTCGATCGCACGCTGCGGCTGTGGGAGGGCACGT
ACCCGTACAGCCAGGTGGCTTGTCTCGAGGGACACCGGCAGCTGATCAGT
GACCTGTGCTGGGCGCCCGACGGTCGGTCGCTCATCAGCGCTTCGTTCGA
CGGACACACGGCGGCCGTGTACGTGGCCAAGTTTTCTCCGCGCGATAGCC
TCGTCGCGTCGGCCGGGTTCGATCGCACGCTGCGGCTGTGGGAGGGCACG
TACCCGTACAGCCAGGTGGCTTGTCTCGAGGGACACCGGCAGCTGATCAG
TGACCTGTGCTGGGCGCCCGACGGTCGGTCGCTCATCAGCGCTTCGTTCG
AC
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