mRNA_S-dermatodea_contig94463.17474.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.630e-43 Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1
Query: 46 LLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
L RQQASQRKLGTVKGVF PCVQNILGVILFIRLPFIVGQAGVFLT+VIILVAK ATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE+
Sbjct: 96 LADRQQASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEI 186
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA) HSP 1 Score: 124 bits (311), Expect = 7.880e-31 Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 46 LLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
+ R + KLGT+KGVF+PC QNILGVI+FIRLP+I GQAG+++TM+I+ ++K T LTTLSM+AIATNG VQAGGPY+IISRNLGVE+
Sbjct: 82 MANRNHVRESKLGTMKGVFLPCFQNILGVIVFIRLPYITGQAGIWMTMLILFLSKLTTVLTTLSMSAIATNGTVQAGGPYFIISRNLGVEL 172
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.050e-28 Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1
Query: 70 QRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
+RKLGTV GVF+PC+QNILGVILFIRLPFI GQAG FL +++++ TAT T+LS++A+ TNG +QAGGPYYIISRNLGVE+
Sbjct: 96 ERKLGTVNGVFLPCLQNILGVILFIRLPFITGQAGCFLASLMLVICFTATFTTSLSLSALVTNGSIQAGGPYYIISRNLGVEI 178
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.360e-27 Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 40 KRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
K T S KLGT+ GVF+PC+QNILGVILFIRLPFI QAG T +IIL+ T+T LT LS++AIATNG +QAGGPYY+ISRNLGVE+
Sbjct: 132 KGTNTGSTESTAKLGTLTGVFLPCLQNILGVILFIRLPFITSQAGCIQTTLIILMCVTSTFLTALSLSAIATNGTIQAGGPYYVISRNLGVEI 224
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.340e-25 Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 31 LPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
LP + +KLGT KGVF+PC+QNILG+IL++RL +I GQAG F T I+L+ +T LT LS++AIATNG+V+AGGPY++ISRNLG EV
Sbjct: 131 LPPTPVSITDSTDTQKLGTFKGVFLPCLQNILGIILYLRLTWITGQAGTFGTSGIVLICACSTFLTALSLSAIATNGRVEAGGPYFVISRNLGPEV 226
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN) HSP 1 Score: 106 bits (264), Expect = 1.580e-24 Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 64 ASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
A + KLGT KGVF+PC+QNILGVILF+RL +I GQAG I+L+ T+T LT LS++A+ATNG+V+AGGPY++ISRNLG EV
Sbjct: 152 AGEEKLGTFKGVFLPCLQNILGVILFLRLCWITGQAGALGATGIVLICATSTFLTALSLSAVATNGKVEAGGPYFVISRNLGPEV 236
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.220e-24 Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 76 KLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 315
KL T+KGV++PC+QNILGVILF+RLPFI QAG LT +I+ + +T LT LS++A+ATNG+++ GGPYYI+SRNLGVE
Sbjct: 79 KLDTLKGVYLPCLQNILGVILFLRLPFITAQAGTILTSLIVTLCTISTFLTALSLSAVATNGKIREGGPYYIVSRNLGVE 158
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S3Z721_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z721_9EUKA) HSP 1 Score: 100 bits (248), Expect = 3.870e-24 Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1
Query: 61 QASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
+++ +K GT GVF+ C+ NI GVI+F+RLP+ VGQAG+ LT+VII ++ TT+TTLSM+AI TNG+V+AGG YY+ISR+LG V
Sbjct: 81 ESTGKKFGTWNGVFVSCLLNIFGVIMFLRLPWTVGQAGIGLTIVIIFISNVVTTITTLSMSAICTNGEVRAGGAYYLISRSLGPRV 166
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A2R5GRV7_9STRA (Solute carrier family 12 member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRV7_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.080e-24 Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 PNPPPAPHPHLPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 315
P+ P A P G A+ ++ GT+ GV++PC+QNILGVILFIRLP+IVGQAG LT VII++ AT LTTLSM+A+ATNG+V AGGPY I+ +NLG E
Sbjct: 121 PSDPEAGGPAAAGXXXXXXXLAAPKRFGTLFGVYLPCLQNILGVILFIRLPWIVGQAGTVLTTVIIMLCVLATGLTTLSMSALATNGKVGAGGPYGILLQNLGPE 225
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S2EJL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJL4_9STRA) HSP 1 Score: 101 bits (251), Expect = 6.830e-24 Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 58 QQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
+ ++ KLGT+ GVF+PC+Q I+GVILF+RL I QAGV +T +II+V +T LT LS++AIATNG + AGGPYY+ISR LGVE+
Sbjct: 96 KNGAEGKLGTLNGVFLPCLQTIIGVILFLRLTSITAQAGVIMTTMIIIVCVISTLLTALSLSAIATNGTICAGGPYYVISRTLGVEI 182 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig94463.17474.1 >prot_S-dermatodea_contig94463.17474.1 ID=prot_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp PNPPPAPHPHLPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLback to top mRNA from alignment at S-dermatodea_contig94463:50..367- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig94463.17474.1 ID=mRNA_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig94463:50..367- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig94463:50..367- >mRNA_S-dermatodea_contig94463.17474.1 ID=mRNA_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig94463:50..367- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |