mRNA_S-dermatodea_contig94463.17474.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94463.17474.1
Unique NamemRNA_S-dermatodea_contig94463.17474.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.630e-43
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1
Query:   46 LLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            L  RQQASQRKLGTVKGVF PCVQNILGVILFIRLPFIVGQAGVFLT+VIILVAK ATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE+
Sbjct:   96 LADRQQASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEI 186          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.880e-31
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query:   46 LLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            +  R    + KLGT+KGVF+PC QNILGVI+FIRLP+I GQAG+++TM+I+ ++K  T LTTLSM+AIATNG VQAGGPY+IISRNLGVE+
Sbjct:   82 MANRNHVRESKLGTMKGVFLPCFQNILGVIVFIRLPYITGQAGIWMTMLILFLSKLTTVLTTLSMSAIATNGTVQAGGPYFIISRNLGVEL 172          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.050e-28
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1
Query:   70 QRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            +RKLGTV GVF+PC+QNILGVILFIRLPFI GQAG FL  +++++  TAT  T+LS++A+ TNG +QAGGPYYIISRNLGVE+
Sbjct:   96 ERKLGTVNGVFLPCLQNILGVILFIRLPFITGQAGCFLASLMLVICFTATFTTSLSLSALVTNGSIQAGGPYYIISRNLGVEI 178          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.360e-27
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 1
Query:   40 KRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            K   T    S  KLGT+ GVF+PC+QNILGVILFIRLPFI  QAG   T +IIL+  T+T LT LS++AIATNG +QAGGPYY+ISRNLGVE+
Sbjct:  132 KGTNTGSTESTAKLGTLTGVFLPCLQNILGVILFIRLPFITSQAGCIQTTLIILMCVTSTFLTALSLSAIATNGTIQAGGPYYVISRNLGVEI 224          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.340e-25
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   31 LPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            LP   +        +KLGT KGVF+PC+QNILG+IL++RL +I GQAG F T  I+L+   +T LT LS++AIATNG+V+AGGPY++ISRNLG EV
Sbjct:  131 LPPTPVSITDSTDTQKLGTFKGVFLPCLQNILGIILYLRLTWITGQAGTFGTSGIVLICACSTFLTALSLSAIATNGRVEAGGPYFVISRNLGPEV 226          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN)

HSP 1 Score: 106 bits (264), Expect = 1.580e-24
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   64 ASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            A + KLGT KGVF+PC+QNILGVILF+RL +I GQAG      I+L+  T+T LT LS++A+ATNG+V+AGGPY++ISRNLG EV
Sbjct:  152 AGEEKLGTFKGVFLPCLQNILGVILFLRLCWITGQAGALGATGIVLICATSTFLTALSLSAVATNGKVEAGGPYFVISRNLGPEV 236          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.220e-24
Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:   76 KLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 315
            KL T+KGV++PC+QNILGVILF+RLPFI  QAG  LT +I+ +   +T LT LS++A+ATNG+++ GGPYYI+SRNLGVE
Sbjct:   79 KLDTLKGVYLPCLQNILGVILFLRLPFITAQAGTILTSLIVTLCTISTFLTALSLSAVATNGKIREGGPYYIVSRNLGVE 158          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S3Z721_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z721_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 3.870e-24
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   61 QASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            +++ +K GT  GVF+ C+ NI GVI+F+RLP+ VGQAG+ LT+VII ++   TT+TTLSM+AI TNG+V+AGG YY+ISR+LG  V
Sbjct:   81 ESTGKKFGTWNGVFVSCLLNIFGVIMFLRLPWTVGQAGIGLTIVIIFISNVVTTITTLSMSAICTNGEVRAGGAYYLISRSLGPRV 166          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A2R5GRV7_9STRA (Solute carrier family 12 member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRV7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.080e-24
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 PNPPPAPHPHLPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVE 315
            P+ P A  P   G        A+ ++ GT+ GV++PC+QNILGVILFIRLP+IVGQAG  LT VII++   AT LTTLSM+A+ATNG+V AGGPY I+ +NLG E
Sbjct:  121 PSDPEAGGPAAAGXXXXXXXLAAPKRFGTLFGVYLPCLQNILGVILFIRLPWIVGQAGTVLTTVIIMLCVLATGLTTLSMSALATNGKVGAGGPYGILLQNLGPE 225          
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Match: A0A7S2EJL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJL4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.830e-24
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   58 QQASQRKLGTVKGVFMPCVQNILGVILFIRLPFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEV 318
            +  ++ KLGT+ GVF+PC+Q I+GVILF+RL  I  QAGV +T +II+V   +T LT LS++AIATNG + AGGPYY+ISR LGVE+
Sbjct:   96 KNGAEGKLGTLNGVFLPCLQTIIGVILFLRLTSITAQAGVIMTTMIIIVCVISTLLTALSLSAIATNGTICAGGPYYVISRTLGVEI 182          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94463.17474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z6_9PHAE5.630e-4393.41Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z2U9_9STRA7.880e-3167.03Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S1BPY8_9STRA1.050e-2869.88Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2K263_9STRA1.360e-2765.59Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A8J2SMD4_9STRA9.340e-2557.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YC09_AURAN1.580e-2463.53AA_permease domain-containing protein (Fragment) n... [more]
A0A7R9YE43_9STRA3.220e-2463.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3Z721_9EUKA3.870e-2458.14Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A2R5GRV7_9STRA6.080e-2457.14Solute carrier family 12 member 2 n=1 Tax=Hondaea ... [more]
A0A7S2EJL4_9STRA6.830e-2458.62Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94463contigS-dermatodea_contig94463:50..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue5.2e-21
Seed eggNOG ortholog44056.XP_009037856.1
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.3293457-CDS-S-dermatodea_contig94463:49..3671622925408.3293457-CDS-S-dermatodea_contig94463:49..367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94463 50..367 -
1694079913.5135024-CDS-S-dermatodea_contig94463:49..3671694079913.5135024-CDS-S-dermatodea_contig94463:49..367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94463 50..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94463.17474.1prot_S-dermatodea_contig94463.17474.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94463 50..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94463.17474.1

>prot_S-dermatodea_contig94463.17474.1 ID=prot_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
PNPPPAPHPHLPGKRLLTRQQASQRKLGTVKGVFMPCVQNILGVILFIRL
PFIVGQAGVFLTMVIILVAKTATTLTTLSMNAIATNGQVQAGGPYYIISR
NLGVEV
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mRNA from alignment at S-dermatodea_contig94463:50..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94463.17474.1 ID=mRNA_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig94463:50..367- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCAACCCCCCACCCGCACCCCACCCCCACCTCCCCGGCAAACGCCTCCT CACCAGGCAGCAGGCGTCTCAGCGCAAGCTTGGGACGGTCAAGGGGGTAT TCATGCCGTGCGTGCAGAACATCCTCGGAGTGATCCTCTTCATCCGTCTT CCGTTCATCGTGGGTCAGGCGGGAGTGTTCCTGACGATGGTGATCATCCT TGTCGCGAAGACGGCCACCACGCTGACGACGCTGTCGATGAACGCGATCG CGACGAACGGGCAGGTGCAGGCGGGAGGGCCCTACTACATCATATCGAGG AACCTGGGGGTTGAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94463:50..367-

>mRNA_S-dermatodea_contig94463.17474.1 ID=mRNA_S-dermatodea_contig94463.17474.1|Name=mRNA_S-dermatodea_contig94463.17474.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig94463:50..367- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCAACCCCCCACCCGCACCCCACCCCCACCTCCCCGGCAAACGCCTCCT
CACCAGGCAGCAGGCGTCTCAGCGCAAGCTTGGGACGGTCAAGGGGGTAT
TCATGCCGTGCGTGCAGAACATCCTCGGAGTGATCCTCTTCATCCGTCTT
CCGTTCATCGTGGGTCAGGCGGGAGTGTTCCTGACGATGGTGATCATCCT
TGTCGCGAAGACGGCCACCACGCTGACGACGCTGTCGATGAACGCGATCG
CGACGAACGGGCAGGTGCAGGCGGGAGGGCCCTACTACATCATATCGAGG
AACCTGGGGGTTGAGGTGCCCAACCCCCCACCCGCACCCCACCCCCACCT
CCCCGGCAAACGCCTCCTCACCAGGCAGCAGGCGTCTCAGCGCAAGCTTG
GGACGGTCAAGGGGGTATTCATGCCGTGCGTGCAGAACATCCTCGGAGTG
ATCCTCTTCATCCGTCTTCCGTTCATCGTGGGTCAGGCGGGAGTGTTCCT
GACGATGGTGATCATCCTTGTCGCGAAGACGGCCACCACGCTGACGACGC
TGTCGATGAACGCGATCGCGACGAACGGGCAGGTGCAGGCGGGAGGGCCC
TACTACATCATATCGAGGAACCTGGGGGTTGAGGTG
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