mRNA_S-dermatodea_contig94361.17466.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94361.17466.1
Unique NamemRNA_S-dermatodea_contig94361.17466.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94361.17466.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.190e-10
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PGQEFTVDVADDRFAAVLEGDTRFGIDRTDAGFK 102
            PGQ+F VDVAD+RFAA+LEGDTRFGIDRTD+ FK
Sbjct:  801 PGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK 834
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BLAST of mRNA_S-dermatodea_contig94361.17466.1 vs. uniprot
Match: A0A7S1FMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.150e-6
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 GQEFTVDVADDRFAAVLEG-DTRFGIDRTDAGFK 102
            G EF VDVADDRFAAVL+G D RFGI RTD  FK
Sbjct:   53 GGEFQVDVADDRFAAVLDGEDARFGITRTDPAFK 86
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94361.17466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFV7_ECTSI2.190e-1082.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1FMP2_9STRA1.150e-676.47Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94361contigS-dermatodea_contig94361:328..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925407.8850489-CDS-S-dermatodea_contig94361:327..4291622925407.8850489-CDS-S-dermatodea_contig94361:327..429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94361 328..429 -
1694079913.2804356-CDS-S-dermatodea_contig94361:327..4291694079913.2804356-CDS-S-dermatodea_contig94361:327..429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94361 328..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94361.17466.1prot_S-dermatodea_contig94361.17466.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94361 328..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94361.17466.1

>prot_S-dermatodea_contig94361.17466.1 ID=prot_S-dermatodea_contig94361.17466.1|Name=mRNA_S-dermatodea_contig94361.17466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=34bp
PGQEFTVDVADDRFAAVLEGDTRFGIDRTDAGFK
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mRNA from alignment at S-dermatodea_contig94361:328..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94361.17466.1 ID=mRNA_S-dermatodea_contig94361.17466.1|Name=mRNA_S-dermatodea_contig94361.17466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at S-dermatodea_contig94361:328..429- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGGGCAAGAATTCACAGTAGACGTCGCGGACGATCGATTCGCGGCGGT
TCTGGAGGGCGACACGCGCTTCGGCATCGACCGGACGGACGCCGGCTTCA
AG
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Coding sequence (CDS) from alignment at S-dermatodea_contig94361:328..429-

>mRNA_S-dermatodea_contig94361.17466.1 ID=mRNA_S-dermatodea_contig94361.17466.1|Name=mRNA_S-dermatodea_contig94361.17466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig94361:328..429- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGGGCAAGAATTCACAGTAGACGTCGCGGACGATCGATTCGCGGCGGT
TCTGGAGGGCGACACGCGCTTCGGCATCGACCGGACGGACGCCGGCTTCA
AGCCCGGGCAAGAATTCACAGTAGACGTCGCGGACGATCGATTCGCGGCG
GTTCTGGAGGGCGACACGCGCTTCGGCATCGACCGGACGGACGCCGGCTT
CAAG
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